pycom04g17640

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0019131
Physical Location & Seq
Reverse (-)
19955254 .. 19961615
6362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 726 bp
ATGGAAGTTGACGAAAAACCAACTGAAGACTACAATGACATTGGAGGGCTGGAGAAGCAGATTCAAGAACTAGTTGAGGCGATTGTTTTACCCATGACCCACCAGGAGCGTTTTCAGAAGTTAGGAATTCGCCCACCAAAGGGAGTGTTATTGTATGGACCTCCTGGAACCGGTAAAACTTTGATGGCTCGGGCTTGTGCTGCTCAGACAAATGCCACTTTTCTGAAACTGGCTGGTCCCCAACTGGTTCAGATGTTTATTGGAGATGGAGCAAAACTTGTTCGCGATGCCTTTCTGCTTGCAAAAGAGAAATCCCCTTGCATCATTTTCATAGATGAAATTGACGCAATTGGCACGAAACGGTTTGATAGTGAAGTGAGCGGGGATAGGGAGGTGCAGCGTACAATGCTTGAGTTGCTAAATCAGCTTGATGGATTTAGTAGCGATGACCGGATCAAGGTGATAGCAGCAACAAATCGTGCTGATATCCTGGACCCTGCTCTGATGCGTTCTGGTCGGTTGGATCGTAAAATTGAGCTTCCTCATCCCACTGAAGAAGCAAGAGCTCGGATTTTGCAGATTCACTCGAGGAAGATGAATGTTCATCCTGATGTCAATTTTGAAGAATTGGCTCGCTCGACCGATGACTTCAACGGAGCACAGCTAAAAGCTCTGTATGTGTGGAGGCAGGCATGCTTGCCCTCCGACGTGATGCCACAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

242

Amino Acids

27.02

Weight (kDa)

5.68

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_5 PF07728 48 - 168 6.1e-08 AAA domain (dynein-related subfamily)
AAA PF00004 49 - 181 2.1e-43 ATPase family associated with various cellular activities (AAA)
nSTAND3 PF20720 49 - 196 2.1e-07 Novel STAND NTPase 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09100
malus_domestica MD04G1199700.v1.1 MD04G1199800.v1.1 MD12G1212500.v1.1
pyrus_communis pycom04g17640
rosa_samantha Rh2CG288900 Rh5BG388700 Rh6BG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 381
AccII CGCG 1 cut(s) 285
AciI CCGC 1 cut(s) 381
AclWI GGATC 2 cut(s) 461, 531
AcsI RAATTY 1 cut(s) 126
AcuI CTGAAG 2 cut(s) 45, 573
AfaI GTAC 1 cut(s) 403
AfiI CCNNNNNNNGG 4 cut(s) 139, 140, 170, 457
AgeI ACCGGT 1 cut(s) 170
AgsI TTSAA 3 cut(s) 65, 623, 652
AhlI ACTAGT 1 cut(s) 70
AjiI CACGTC 1 cut(s) 709
AjnI CCWGG 3 cut(s) 102, 163, 489
AleI CACNNNNGTG 1 cut(s) 721
AluBI AGCT 5 cut(s) 427, 538, 566, 664, 671
AluI AGCT 5 cut(s) 427, 538, 566, 664, 671
Alw21I GWGCWC 2 cut(s) 568, 661
AlwI GGATC 2 cut(s) 461, 531
Ama87I CYCGRG 2 cut(s) 189, 586
ApeKI GCWGC 3 cut(s) 200, 397, 467
ApoI RAATTY 1 cut(s) 126
AsiGI ACCGGT 1 cut(s) 170
AspS9I GGNCC 3 cut(s) 158, 236, 493
AsuHPI GGTGA 1 cut(s) 472
AvaI CYCGRG 2 cut(s) 189, 586
AvaII GGWCC 3 cut(s) 158, 236, 493
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 2 cut(s) 568, 661
BbvI GCAGC 3 cut(s) 187, 409, 479
BccI CCATC 3 cut(s) 178, 260, 425
BciT130I CCWGG 3 cut(s) 104, 165, 491
BcuI ACTAGT 1 cut(s) 70
BfaI CTAG 1 cut(s) 71
BisI GCNGC 3 cut(s) 201, 398, 468
BlsI GCNGC 3 cut(s) 202, 399, 469
Bme1390I CCNGG 3 cut(s) 104, 165, 491
Bme18I GGWCC 3 cut(s) 158, 236, 493
BmeT110I CYCGRG 2 cut(s) 189, 586
BmgBI CACGTC 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 158, 236, 493
BmiI GGNNCC 3 cut(s) 169, 238, 495
BmrFI CCNGG 3 cut(s) 104, 165, 491
BmsI GCATC 4 cut(s) 277, 330, 495, 702
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 431
BsaWI WCCGGW 2 cut(s) 170, 450
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 140, 170, 457
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 2 cut(s) 234, 249
BseBI CCWGG 3 cut(s) 104, 165, 491
BseGI GGATG 2 cut(s) 544, 604
BseLI CCNNNNNNNGG 4 cut(s) 139, 140, 170, 457
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 234, 249
BseXI GCAGC 3 cut(s) 187, 409, 479
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 642
BshTI ACCGGT 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 642
BsiHKAI GWGCWC 2 cut(s) 568, 661
BsiHKCI CYCGRG 2 cut(s) 189, 586
BsiSI CCGG 2 cut(s) 171, 451
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 4 cut(s) 139, 140, 170, 457
BsmFI GGGAC 1 cut(s) 222
BsoBI CYCGRG 2 cut(s) 189, 586
Bsp1286I GDGCHC 2 cut(s) 568, 661
Bsp143I GATC 2 cut(s) 453, 523
Bsp68I TCGCGA 1 cut(s) 285
BspACI CCGC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 169, 238, 495
BspPI GGATC 2 cut(s) 461, 531
BsrBI CCGCTC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 2 cut(s) 234, 249
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 453, 523
Bst2UI CCWGG 3 cut(s) 104, 165, 491
Bst4CI ACNGT 1 cut(s) 363
BstC8I GCNNGC 5 cut(s) 300, 634, 690, 694, 698
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 544, 604
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 2 cut(s) 456, 526
BstMBI GATC 2 cut(s) 453, 523
BstMCI CGRYCG 1 cut(s) 642
BstMWI GCNNNNNNNGC 5 cut(s) 55, 200, 406, 415, 424
BstNI CCWGG 3 cut(s) 104, 165, 491
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 3 cut(s) 102, 163, 489
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 187, 409, 479
BstV2I GAAGAC 1 cut(s) 33
BtgZI GCGATG 2 cut(s) 300, 459
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 2 cut(s) 544, 604
BtsIMutI CAGTG 1 cut(s) 549
BtuMI TCGCGA 1 cut(s) 285
Cac8I GCNNGC 5 cut(s) 300, 634, 690, 694, 698
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 158, 236, 493
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 402
CspAI ACCGGT 1 cut(s) 170
CviAII CATG 2 cut(s) 94, 693
CviQI GTAC 1 cut(s) 402
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 455, 525
DpnII GATC 2 cut(s) 453, 523
Ecl136II GAGCTC 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 568
Eco32I GATATC 1 cut(s) 487
Eco47I GGWCC 3 cut(s) 158, 236, 493
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 2 cut(s) 45, 573
Eco88I CYCGRG 2 cut(s) 189, 586
EcoICRI GAGCTC 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 126
EcoRII CCWGG 3 cut(s) 102, 163, 489
EcoRV GATATC 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 2 cut(s) 97, 696
FaiI YATR 5 cut(s) 95, 156, 332, 678, 694
FaqI GGGAC 1 cut(s) 222
FatI CATG 2 cut(s) 93, 692
FauI CCCGC 1 cut(s) 374
Fnu4HI GCNGC 3 cut(s) 201, 398, 468
FokI GGATG 2 cut(s) 531, 591
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 3 cut(s) 201, 398, 468
FspBI CTAG 1 cut(s) 71
GluI GCNGC 3 cut(s) 201, 398, 468
GsuI CTGGAG 1 cut(s) 71
HapII CCGG 2 cut(s) 171, 451
HgaI GACGC 1 cut(s) 353
Hin1II CATG 2 cut(s) 97, 696
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 2 cut(s) 61, 580
HpaII CCGG 2 cut(s) 171, 451
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 7 cut(s) 117, 207, 225, 252, 504, 570, 706
Hpy188III TCNNGA 3 cut(s) 65, 284, 608
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 710
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 4 cut(s) 302, 321, 397, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 200, 406, 415, 424
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 2 cut(s) 97, 696
Kzo9I GATC 2 cut(s) 453, 523
LmnI GCTCC 3 cut(s) 106, 269, 656
Lsp1109I GCAGC 3 cut(s) 187, 409, 479
LweI GCATC 4 cut(s) 277, 330, 495, 702
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 708
MalI GATC 2 cut(s) 455, 525
MbiI CCGCTC 1 cut(s) 381
MboI GATC 2 cut(s) 453, 523
MboII GAAGA 4 cut(s) 38, 566, 604, 635
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 568, 661
MluCI AATT 6 cut(s) 126, 339, 348, 531, 616, 626
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 9 cut(s) 38, 70, 171, 385, 552, 582, 678, 712, 714
MslI CAYNNNNRTG 2 cut(s) 609, 721
MspI CCGG 2 cut(s) 171, 451
MspR9I CCNGG 3 cut(s) 104, 165, 491
MunI CAATTG 1 cut(s) 348
MvaI CCWGG 3 cut(s) 104, 165, 491
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 55, 200, 406, 415, 424
NdeII GATC 2 cut(s) 453, 523
NlaIII CATG 2 cut(s) 97, 696
NlaIV GGNNCC 3 cut(s) 169, 238, 495
NruI TCGCGA 1 cut(s) 285
NspI RCATGY 1 cut(s) 696
OliI CACNNNNGTG 1 cut(s) 721
PaeI GCATGC 1 cut(s) 696
PaeR7I CTCGAG 1 cut(s) 586
PcsI WCGNNNNNNNCGW 1 cut(s) 523
PfeI GAWTC 2 cut(s) 61, 580
PfoI TCCNGGA 2 cut(s) 163, 489
PinAI ACCGGT 1 cut(s) 170
PkrI GCNGC 3 cut(s) 202, 399, 469
Psp124BI GAGCTC 1 cut(s) 568
Psp6I CCWGG 3 cut(s) 102, 163, 489
PspGI CCWGG 3 cut(s) 102, 163, 489
PspN4I GGNNCC 3 cut(s) 169, 238, 495
PspPI GGNCC 3 cut(s) 158, 236, 493
PspXI VCTCGAGB 1 cut(s) 586
RruI TCGCGA 1 cut(s) 285
RsaI GTAC 1 cut(s) 403
RsaNI GTAC 1 cut(s) 402
RseI CAYNNNNRTG 2 cut(s) 609, 721
SacI GAGCTC 1 cut(s) 568
SatI GCNGC 3 cut(s) 201, 398, 468
Sau3AI GATC 2 cut(s) 453, 523
Sau96I GGNCC 3 cut(s) 158, 236, 493
ScrFI CCNGG 3 cut(s) 104, 165, 491
SduI GDGCHC 2 cut(s) 568, 661
SfaNI GCATC 4 cut(s) 277, 330, 495, 702
Sfr274I CTCGAG 1 cut(s) 586
SinI GGWCC 3 cut(s) 158, 236, 493
SlaI CTCGAG 1 cut(s) 586
SmiMI CAYNNNNRTG 2 cut(s) 609, 721
SmlI CTYRAG 2 cut(s) 410, 586
SmoI CTYRAG 2 cut(s) 410, 586
SpeI ACTAGT 1 cut(s) 70
SphI GCATGC 1 cut(s) 696
Sse9I AATT 6 cut(s) 126, 339, 348, 531, 616, 626
SsiI CCGC 1 cut(s) 381
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 3 cut(s) 102, 163, 489
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 1 cut(s) 711
TaqI TCGA 2 cut(s) 587, 638
TaqII GACCGA 1 cut(s) 656
TasI AATT 6 cut(s) 126, 339, 348, 531, 616, 626
TfiI GAWTC 2 cut(s) 61, 580
TscAI CASTG 1 cut(s) 556
TseI GCWGC 3 cut(s) 200, 397, 467
TspDTI ATGAA 4 cut(s) 319, 351, 593, 611
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 3 cut(s) 158, 236, 493
XapI RAATTY 1 cut(s) 126
XceI RCATGY 1 cut(s) 696
XhoI CTCGAG 1 cut(s) 586
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.