Rh6BG234600

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019131
Physical Location & Seq
Forward (+)
44107870 .. 44112826
4957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG234600.1

Sequence Viewer

Length: 318 bp
ATGATTTACTATTGTTCCGAGGGACTGCTGCTACTGAATCACTTGCTTAGAGTTGTGGACTCCGGGAGTGGCTTCGCCAAGAAAAAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTCCTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTAGAGATCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGTATGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

4.77

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 55 - 100 2.2e-07 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09100
malus_domestica MD04G1199700.v1.1 MD04G1199800.v1.1 MD12G1212500.v1.1
pyrus_communis pycom04g17640
rosa_samantha Rh2CG288900 Rh5BG388700 Rh6BG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 215, 286
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 1 cut(s) 116
AluI AGCT 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 64
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 15
BccI CCATC 2 cut(s) 119, 307
BciVI GTATCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 64
BfaI CTAG 1 cut(s) 246
BfuI GTATCC 1 cut(s) 283
BglII AGATCT 1 cut(s) 250
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 64
Bpu10I CCTNAGC 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 215, 286
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 215, 286
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 15
BsiSI CCGG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 215, 286
BsmFI GGGAC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 139, 250, 282
BspCNI CTCAG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 3 cut(s) 139, 250, 282
BstDEI CTNAG 2 cut(s) 47, 117
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 3 cut(s) 142, 253, 285
BstMBI GATC 3 cut(s) 139, 250, 282
BstSCI CCNGG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuI GTATCC 1 cut(s) 283
BtsCI GGATG 1 cut(s) 299
CviJI RGCY 4 cut(s) 72, 116, 220, 244
CviKI_1 RGCY 4 cut(s) 72, 116, 220, 244
DdeI CTNAG 2 cut(s) 47, 117
DpnI GATC 3 cut(s) 141, 252, 284
DpnII GATC 3 cut(s) 139, 250, 282
FaiI YATR 1 cut(s) 309
FaqI GGGAC 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 246
GluI GCNGC 1 cut(s) 29
HapII CCGG 1 cut(s) 63
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 5 cut(s) 37, 59, 100, 146, 311
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 3 cut(s) 58, 226, 265
Hpy188I TCNGA 3 cut(s) 19, 195, 304
Hpy188III TCNNGA 3 cut(s) 104, 143, 315
Hpy8I GTNNAC 3 cut(s) 58, 226, 265
HpyF3I CTNAG 2 cut(s) 47, 117
Kzo9I GATC 3 cut(s) 139, 250, 282
LpnPI CCDG 5 cut(s) 76, 117, 222, 243, 293
Lsp1109I GCAGC 1 cut(s) 15
MaeI CTAG 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 275
MalI GATC 3 cut(s) 141, 252, 284
MboI GATC 3 cut(s) 139, 250, 282
MboII GAAGA 2 cut(s) 119, 134
MflI RGATCY 1 cut(s) 250
MluCI AATT 1 cut(s) 236
MlyI GAGTC 2 cut(s) 53, 140
MnlI CCTC 3 cut(s) 13, 112, 198
MseI TTAA 1 cut(s) 239
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 64
NciI CCSGG 1 cut(s) 64
NdeII GATC 3 cut(s) 139, 250, 282
PfeI GAWTC 3 cut(s) 37, 100, 311
PfoI TCCNGGA 1 cut(s) 62
PkrI GCNGC 1 cut(s) 30
PleI GAGTC 2 cut(s) 53, 140
PpsI GAGTC 2 cut(s) 53, 140
PsuI RGATCY 1 cut(s) 250
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 139, 250, 282
SchI GAGTC 2 cut(s) 53, 140
ScrFI CCNGG 1 cut(s) 64
SetI ASST 2 cut(s) 118, 282
Sse9I AATT 1 cut(s) 236
SspMI CTAG 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 62
TasI AATT 1 cut(s) 236
TfiI GAWTC 3 cut(s) 37, 100, 311
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 113, 126
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.