Rh5BG388700

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019131
Physical Location & Seq
Forward (+)
62218006 .. 62221198
3193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG388700.1

Sequence Viewer

Length: 366 bp
ATGCAGCACTTGGAGTTCCTCTTCTTTATTTGCGGTTACTTATTCAAAGACTTGCAAATTAAGCAACTAAGGTGTTATGATGATATTGTCGGAACCATGCTCCCAGAGCTCGAAACGTCCGTTGACAAAGTCATAATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACACCTCCTTGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGATCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGTATGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0001678 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009743 GO:0009746 GO:0009749 GO:0009756 GO:0009757 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010182 GO:0010243 GO:0010255 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0019941 GO:0022624 GO:0023052 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032991 GO:0033500 GO:0033554 GO:0034284 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042592 GO:0042593 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055082 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071326 GO:0071331 GO:0071333 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901700 GO:1901701 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

4.26

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 72 - 116 7.2e-08 Proteasomal ATPase OB C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09100
malus_domestica MD04G1199700.v1.1 MD04G1199800.v1.1 MD12G1212500.v1.1
pyrus_communis pycom04g17640
rosa_samantha Rh2CG288900 Rh5BG388700 Rh6BG234600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 263, 334
AgsI TTSAA 2 cut(s) 46, 226
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 109, 164
AluI AGCT 2 cut(s) 109, 164
Alw21I GWGCWC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 167, 355
BciT130I CCWGG 1 cut(s) 294
BciVI GTATCC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 331
BglII AGATCT 1 cut(s) 298
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 334
BseBI CCWGG 1 cut(s) 294
BseGI GGATG 1 cut(s) 347
BseLI CCNNNNNNNGG 2 cut(s) 263, 334
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 263, 334
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 187, 298, 330
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 94
BssMI GATC 3 cut(s) 187, 298, 330
Bst2UI CCWGG 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 68, 165
BstF5I GGATG 1 cut(s) 347
BstKTI GATC 3 cut(s) 190, 301, 333
BstMBI GATC 3 cut(s) 187, 298, 330
BstMWI GCNNNNNNNGC 2 cut(s) 61, 106
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BsuI GTATCC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 347
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 109, 164, 268, 292
CviKI_1 RGCY 4 cut(s) 109, 164, 268, 292
DdeI CTNAG 2 cut(s) 68, 165
DpnI GATC 3 cut(s) 189, 300, 332
DpnII GATC 3 cut(s) 187, 298, 330
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 100
FaiI YATR 4 cut(s) 78, 98, 134, 357
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 334
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 315
Hin1II CATG 1 cut(s) 100
HincII GTYRAC 2 cut(s) 124, 274
HindII GTYRAC 2 cut(s) 124, 274
HinfI GANTC 3 cut(s) 148, 194, 359
Hpy166II GTNNAC 3 cut(s) 124, 274, 313
Hpy188I TCNGA 3 cut(s) 92, 243, 352
Hpy188III TCNNGA 3 cut(s) 152, 191, 363
Hpy8I GTNNAC 3 cut(s) 124, 274, 313
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 4, 55
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 106
HpyF3I CTNAG 2 cut(s) 68, 165
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 3 cut(s) 187, 298, 330
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 7 cut(s) 117, 165, 270, 279, 291, 306, 341
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 35, 323
MalI GATC 3 cut(s) 189, 300, 332
MboI GATC 3 cut(s) 187, 298, 330
MboII GAAGA 3 cut(s) 13, 167, 182
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 2 cut(s) 57, 284
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 29, 160, 243
MseI TTAA 2 cut(s) 60, 287
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 61, 106
NdeII GATC 3 cut(s) 187, 298, 330
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 2 cut(s) 148, 359
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 128
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 60, 287
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 187, 298, 330
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 111
SetI ASST 6 cut(s) 74, 111, 119, 166, 235, 330
Sse9I AATT 2 cut(s) 57, 284
SsiI CCGC 1 cut(s) 33
SspI AATATT 1 cut(s) 138
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 292
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 57, 284
TfiI GAWTC 2 cut(s) 148, 359
Tru1I TTAA 2 cut(s) 60, 287
Tru9I TTAA 2 cut(s) 60, 287
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 161, 174
TspGWI ACGGA 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.