Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007693

Physical Location & Seq

Genomic Coordinates Forward (+)

22845993 .. 22848018

Gene Structure 2026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATGGAAAGAAGAGAAAATGAGATTGTTAGTACACAAGCCTTCAATTTGAACAGTAATGATGATCACTCAAAGAGTGACGTCATGCAAGACGTCATCAAAAGGAGTCGACTTGACAAGACCCTCTTCTTTGATCTCAGAGGAAATCACGACAACTTTGGCGTCCCACAGCTCGGCGGCTCCTTTGATTTCTTTTCAAAGTACAGCATTAGTGGCCACTTGGGCAGAAGTCGGAATGTCAACAGTGTCACTCTTCAGACTGCTGATCGGAAGCATCTCTTTGTTGGAGTTGATAGCACAATGCCTGTTGGTTTACGAGGTCCGACTAATCTCTTTGCGCATCCAACTGATCAACTATTAGCACAACTGGATACGCACCTCTCACAGTGGGACTCTAGATCACAAGAACCATTAAGCAAGATTTCCTTCGGGCATTTTCCTCTATCATTCTCACAGTGGGACTCACAGTTCATGTCAACATCTTCAACCCATCACGATTATGAATGTCATGATATGGTCCCTTTATCTTACGGCACAGTTAGAGCCCTGGTGTTTTCTGTTTCTCCAATTGCATCACTGGTCTTTGAGGCACCCATGCACATGATTGGGGATAATAACTCCAGGGGAGATCATTTTGTTACTCCATGGAATCATAGAGCCTTTGAGGATCCAGTCCCTTACAGATACTGGTTGCAAATAGAATCAACAGACTTGATGGGCAGATCAACGTTATCTGATTTAAGGCCGTTTTCTGTTAATGGGCTTACTACTACGATTTCTTGGACTTGGAAGGAATTTATGGTCATGGGTTGTCAATGGGCTGCCTTGTATAGTTGTATTACCCAATGCTCTGGTGTGCTGTATATTTCATACCCTCTGTTCTCCTTATTCCACAAGCTATCCTTATTTTCTCAGTTAAGACATTTCACTTACAAGAATAAGGGCTTTGTAAATGCTGTACGATTGGTTTTTCAGCTCTGCAAGCTTCCCGTAGCATGGTTTGGTTTCTTAGGATACTTATTCTACCTTATATTATTCCCCTGGTTTATTGGGCAAGTTTTCACAGACGGAAAGGATGAAGGATACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

364

Amino Acids

41.67

Weight (kDa)

6.56

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ig_TMM62	PF24384	154 - 255	2e-27	TMEM62 Ig-like domain
TMEM62_C	PF24394	305 - 362	4e-13	TMEM62 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03305
fragaria_vesca	FvH4_6g00140 FvH4_6g00140
malus_domestica	MD04G1248100.v1.1 MD12G1262500.v1.1
prunus_persica	Prupe.6G364500_v2.0.a1 Prupe.6G364500_v2.0.a1 Prupe.6G364500_v2.0.a1 Prupe.6G364500_v2.0.a1 Prupe.6G364500_v2.0.a1 Prupe.6G364500_v2.0.a1 Prupe.6G364500_v2.0.a1
pyrus_communis	pycom04g21870 pycom12g24150
rosa_chinensis	RchiOBHm_Chr3g0447491
rosa_laevigata	RLG00000025993
rosa_multiflora	Rmu_sc0006572.1_g000004
rosa_roxburghii	Rroxscaffold_6G00425710
rosa_rugosa	Rorug02G0602300
rosa_samantha	Rh3AG002500 Rh3BG002000 Rh3CG002300 Rh3DG002400
rosa_wichuraiana	Rw3G000140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	84, 96
Acc16I	TGCGCA	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	177
AclI	AACGTT	1 cut(s)	728
AclWI	GGATC	2 cut(s)	662, 675
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	1 cut(s)	239
AcyI	GRCGYC	3 cut(s)	81, 93, 162
AfaI	GTAC	3 cut(s)	34, 203, 960
AfiI	CCNNNNNNNGG	2 cut(s)	173, 996
AgsI	TTSAA	4 cut(s)	46, 52, 198, 486
AjnI	CCWGG	3 cut(s)	546, 620, 1040
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	172, 898, 976, 985
AluI	AGCT	4 cut(s)	172, 898, 976, 985
AlwI	GGATC	2 cut(s)	662, 675
AlwNI	CAGNNNCTG	1 cut(s)	687
AoxI	GGCC	2 cut(s)	214, 743
ApeKI	GCWGC	1 cut(s)	821
ApoI	RAATTY	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	2 cut(s)	320, 517
AvaII	GGWCC	2 cut(s)	320, 517
BalI	TGGCCA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	547
BbvI	GCAGC	1 cut(s)	808
BccI	CCATC	2 cut(s)	498, 709
BceAI	ACGGC	2 cut(s)	547, 730
BciT130I	CCWGG	3 cut(s)	548, 622, 1042
BciVI	GTATCC	3 cut(s)	364, 1007, 1076
BclI	TGATCA	2 cut(s)	64, 349
BfaI	CTAG	1 cut(s)	396
BfuI	GTATCC	3 cut(s)	364, 1007, 1076
BglI	GCCNNNNNGGC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	178, 822
BlsI	GCNGC	2 cut(s)	179, 823
Bme1390I	CCNGG	3 cut(s)	548, 622, 1042
Bme18I	GGWCC	2 cut(s)	320, 517
BmgT120I	GGNCC	2 cut(s)	320, 517
BmiI	GGNNCC	4 cut(s)	181, 519, 591, 669
BmrFI	CCNGG	3 cut(s)	548, 622, 1042
BmsI	GCATC	3 cut(s)	283, 349, 581
BpmI	CTGGAG	1 cut(s)	604
BsaHI	GRCGYC	3 cut(s)	81, 93, 162
BsaJI	CCNNGG	4 cut(s)	546, 621, 644, 1040
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 996
Bse1I	ACTGG	4 cut(s)	372, 582, 671, 692
BseBI	CCWGG	3 cut(s)	548, 622, 1042
BseDI	CCNNGG	4 cut(s)	546, 621, 644, 1040
BseGI	GGATG	2 cut(s)	340, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	173, 996
BseMII	CTCAG	2 cut(s)	151, 926
BseNI	ACTGG	4 cut(s)	372, 582, 671, 692
BseXI	GCAGC	1 cut(s)	808
BshFI	GGCC	2 cut(s)	216, 745
BshNI	GGYRCC	1 cut(s)	589
BslFI	GGGAC	5 cut(s)	149, 404, 473, 503, 659
BslI	CCNNNNNNNGG	2 cut(s)	173, 996
BsmFI	GGGAC	5 cut(s)	149, 404, 473, 503, 659
BsnI	GGCC	2 cut(s)	216, 745
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	2 cut(s)	216, 745
BspCNI	CTCAG	2 cut(s)	150, 925
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	181, 519, 591, 669
BspPI	GGATC	2 cut(s)	662, 675
BspT107I	GGYRCC	1 cut(s)	589
BsrI	ACTGG	4 cut(s)	372, 582, 671, 692
BssECI	CCNNGG	4 cut(s)	546, 621, 644, 1040
BssMI	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
BssNI	GRCGYC	3 cut(s)	81, 93, 162
BssT1I	CCWWGG	1 cut(s)	644
Bst2UI	CCWGG	3 cut(s)	548, 622, 1042
Bst4CI	ACNGT	6 cut(s)	56, 245, 387, 456, 468, 538
Bst6I	CTCTTC	3 cut(s)	7, 131, 258
BstACI	GRCGYC	3 cut(s)	81, 93, 162
BstC8I	GCNNGC	1 cut(s)	983
BstDEI	CTNAG	3 cut(s)	137, 912, 1009
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	340, 1081
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	8 cut(s)	67, 136, 268, 352, 401, 631, 670, 725
BstMBI	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 222, 982
BstNI	CCWGG	3 cut(s)	548, 622, 1042
BstSCI	CCNGG	3 cut(s)	546, 620, 1040
BstV1I	GCAGC	1 cut(s)	808
BstX2I	RGATCY	1 cut(s)	667
BstXI	CCANNNNNNTGG	1 cut(s)	851
BstYI	RGATCY	1 cut(s)	667
BsuI	GTATCC	3 cut(s)	364, 1007, 1076
BsuRI	GGCC	2 cut(s)	216, 745
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	340, 1081
BtsIMutI	CAGTG	4 cut(s)	250, 392, 461, 575
Cac8I	GCNNGC	1 cut(s)	983
CaiI	CAGNNNCTG	1 cut(s)	687
CciI	TCATGA	1 cut(s)	508
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	2 cut(s)	320, 517
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	33, 202, 959
CviAII	CATG	8 cut(s)	85, 472, 509, 595, 601, 645, 805, 996
CviQI	GTAC	3 cut(s)	33, 202, 959
DdeI	CTNAG	3 cut(s)	137, 912, 1009
DpnI	GATC	8 cut(s)	66, 135, 267, 351, 400, 630, 669, 724
DpnII	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	3 cut(s)	7, 131, 258
EarI	CTCTTC	3 cut(s)	7, 131, 258
Eco130I	CCWWGG	1 cut(s)	644
Eco24I	GRGCYC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	320, 517
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	546, 620, 1040
EcoT14I	CCWWGG	1 cut(s)	644
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	8 cut(s)	88, 475, 512, 598, 604, 648, 808, 999
FalI	AAGNNNNNCTT	8 cut(s)	110, 142, 263, 295, 410, 442, 887, 919
FaqI	GGGAC	5 cut(s)	149, 404, 473, 503, 659
FatI	CATG	8 cut(s)	84, 471, 508, 594, 600, 644, 804, 995
FbaI	TGATCA	2 cut(s)	64, 349
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	178, 822
FokI	GGATG	2 cut(s)	327, 1088
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	2 cut(s)	178, 822
FspBI	CTAG	1 cut(s)	396
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	178, 822
GsuI	CTGGAG	1 cut(s)	604
HaeIII	GGCC	2 cut(s)	216, 745
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	340
Hin1I	GRCGYC	3 cut(s)	81, 93, 162
Hin1II	CATG	8 cut(s)	88, 475, 512, 598, 604, 648, 808, 999
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HincII	GTYRAC	3 cut(s)	110, 241, 477
HindII	GTYRAC	3 cut(s)	110, 241, 477
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	5 cut(s)	106, 392, 461, 649, 701
Hpy166II	GTNNAC	5 cut(s)	35, 110, 241, 314, 477
Hpy188I	TCNGA	6 cut(s)	140, 234, 258, 270, 324, 736
Hpy188III	TCNNGA	4 cut(s)	149, 396, 494, 509
Hpy8I	GTNNAC	5 cut(s)	35, 110, 241, 314, 477
HpyAV	CCTTC	4 cut(s)	52, 436, 784, 1073
HpyCH4III	ACNGT	6 cut(s)	56, 245, 387, 456, 468, 538
HpyCH4IV	ACGT	3 cut(s)	81, 93, 728
HpyCH4V	TGCA	5 cut(s)	88, 572, 598, 694, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 222, 982
HpyF3I	CTNAG	3 cut(s)	137, 912, 1009
HpySE526I	ACGT	3 cut(s)	81, 93, 728
Hsp92I	GRCGYC	3 cut(s)	81, 93, 162
Hsp92II	CATG	8 cut(s)	88, 475, 512, 598, 604, 648, 808, 999
HspAI	GCGC	1 cut(s)	338
Ksp22I	TGATCA	2 cut(s)	64, 349
Kzo9I	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	808
LweI	GCATC	3 cut(s)	283, 349, 581
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	3 cut(s)	81, 93, 728
MaeIII	GTNAC	3 cut(s)	77, 247, 637
MalI	GATC	8 cut(s)	66, 135, 267, 351, 400, 630, 669, 724
MboI	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
MboII	GAAGA	4 cut(s)	24, 118, 245, 474
MfeI	CAATTG	1 cut(s)	567
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	3 cut(s)	46, 567, 794
MluNI	TGGCCA	1 cut(s)	216
MlyI	GAGTC	3 cut(s)	115, 386, 455
MmeI	TCCRAC	4 cut(s)	212, 265, 347, 368
MnlI	CCTC	8 cut(s)	134, 134, 311, 389, 450, 580, 658, 885
Mox20I	TGGCCA	1 cut(s)	216
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	4 cut(s)	413, 740, 756, 917
MslI	CAYNNNNRTG	2 cut(s)	498, 599
Msp20I	TGGCCA	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	548, 622, 1042
MunI	CAATTG	1 cut(s)	567
MvaI	CCWGG	3 cut(s)	548, 622, 1042
MwoI	GCNNNNNNNGC	3 cut(s)	213, 222, 982
NcoI	CCATGG	1 cut(s)	644
NdeII	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
NlaIII	CATG	8 cut(s)	88, 475, 512, 598, 604, 648, 808, 999
NlaIV	GGNNCC	4 cut(s)	181, 519, 591, 669
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	77, 247
NsbI	TGCGCA	1 cut(s)	339
PagI	TCATGA	1 cut(s)	508
PfeI	GAWTC	2 cut(s)	649, 701
PkrI	GCNGC	2 cut(s)	179, 823
PleI	GAGTC	3 cut(s)	114, 386, 455
PpsI	GAGTC	3 cut(s)	114, 386, 455
Psp1406I	AACGTT	1 cut(s)	728
Psp6I	CCWGG	3 cut(s)	546, 620, 1040
PspGI	CCWGG	3 cut(s)	546, 620, 1040
PspN4I	GGNNCC	4 cut(s)	181, 519, 591, 669
PspPI	GGNCC	2 cut(s)	320, 517
PstNI	CAGNNNCTG	1 cut(s)	687
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	3 cut(s)	34, 203, 960
RsaNI	GTAC	3 cut(s)	33, 202, 959
RseI	CAYNNNNRTG	2 cut(s)	498, 599
SalI	GTCGAC	1 cut(s)	108
SaqAI	TTAA	4 cut(s)	413, 740, 756, 917
SatI	GCNGC	2 cut(s)	178, 822
Sau3AI	GATC	8 cut(s)	64, 133, 265, 349, 398, 628, 667, 722
Sau96I	GGNCC	2 cut(s)	320, 517
SchI	GAGTC	3 cut(s)	115, 386, 455
ScrFI	CCNGG	3 cut(s)	548, 622, 1042
SduI	GDGCHC	1 cut(s)	547
SfaNI	GCATC	3 cut(s)	283, 349, 581
SinI	GGWCC	2 cut(s)	320, 517
SmiMI	CAYNNNNRTG	2 cut(s)	498, 599
Sse9I	AATT	3 cut(s)	46, 567, 794
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	3 cut(s)	546, 620, 1040
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	6 cut(s)	56, 245, 387, 456, 468, 538
TaiI	ACGT	3 cut(s)	84, 96, 731
TaqI	TCGA	1 cut(s)	109
TasI	AATT	3 cut(s)	46, 567, 794
TatI	WGTACW	2 cut(s)	32, 201
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	2 cut(s)	649, 701
Tru1I	TTAA	4 cut(s)	413, 740, 756, 917
Tru9I	TTAA	4 cut(s)	413, 740, 756, 917
TscAI	CASTG	4 cut(s)	250, 392, 461, 582
TseFI	GTSAC	2 cut(s)	77, 247
TseI	GCWGC	1 cut(s)	821
Tsp45I	GTSAC	2 cut(s)	77, 247
TspDTI	ATGAA	4 cut(s)	460, 516, 858, 1092
TspGWI	ACGGA	1 cut(s)	1083
TspRI	CASTG	4 cut(s)	250, 392, 461, 582
VpaK11BI	GGWCC	2 cut(s)	320, 517
XapI	RAATTY	1 cut(s)	794
XbaI	TCTAGA	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	396
ZraI	GACGTC	2 cut(s)	82, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.