pycom05g09570

histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014563
Physical Location & Seq
Reverse (-)
12749704 .. 12751059
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGGCAGCCCAAGCTGGTTCTTCTTCTGCGCAGGAGGACCAATTTCTAGAAAACGAGGAAGATTTATTTTATGGAGCTGAATCGGGTTGGGTCGAGGCCCGAACATCTTGCGATCACCTTGCTTCCCTGTCCTCTGATCTCGCTCACATTCCCACTCCTGATACTGCCTGCAACAGATGCCAGCACCCCAATGAGAACTGGTTATGTTTGTGCTGTAAGGACGTCCTCTGCAGCCGCTTTGTGAACAAGCACATGCTCCAGCATTACCAGCAGTCAAATCATTGTCTTGCTCTCAGCTATAGTGACCTATCTGTCTGGTGTTTCTCCTGTGACGCATATTTAGATGCGCAACTGATCCCGCAACTGCGGCCTGTATATGAAACTGCCTACATTCTGAAATTCGGCGAGGCGCCACCATTGCGTACGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000302 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0004407 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005829 GO:0005856 GO:0005874 GO:0005875 GO:0005886 GO:0005901 GO:0006325 GO:0006355 GO:0006464 GO:0006476 GO:0006508 GO:0006515 GO:0006807 GO:0006810 GO:0006886 GO:0006950 GO:0006979 GO:0006996 GO:0008013 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009636 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010310 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010604 GO:0010605 GO:0010629 GO:0010632 GO:0010634 GO:0010638 GO:0010646 GO:0010647 GO:0010727 GO:0010821 GO:0010822 GO:0010869 GO:0010870 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015630 GO:0015631 GO:0015833 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016239 GO:0016241 GO:0016569 GO:0016570 GO:0016575 GO:0016787 GO:0016810 GO:0016811 GO:0018193 GO:0018205 GO:0019213 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0022607 GO:0023051 GO:0023056 GO:0030030 GO:0030031 GO:0030162 GO:0030163 GO:0030334 GO:0030335 GO:0030424 GO:0030425 GO:0031072 GO:0031252 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031334 GO:0031399 GO:0031401 GO:0031410 GO:0031593 GO:0031625 GO:0031647 GO:0031974 GO:0031981 GO:0031982 GO:0032268 GO:0032269 GO:0032270 GO:0032418 GO:0032459 GO:0032461 GO:0032879 GO:0032886 GO:0032991 GO:0033036 GO:0033043 GO:0033135 GO:0033138 GO:0033143 GO:0033554 GO:0033558 GO:0034599 GO:0034613 GO:0034614 GO:0034983 GO:0035601 GO:0035690 GO:0035966 GO:0035967 GO:0036211 GO:0036477 GO:0040012 GO:0040017 GO:0040029 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0042542 GO:0042826 GO:0042886 GO:0042903 GO:0042995 GO:0043005 GO:0043014 GO:0043025 GO:0043067 GO:0043068 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043242 GO:0043244 GO:0043254 GO:0043412 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044297 GO:0044389 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0044853 GO:0044877 GO:0045121 GO:0045184 GO:0045861 GO:0045892 GO:0045934 GO:0045937 GO:0046677 GO:0046907 GO:0048156 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051179 GO:0051193 GO:0051195 GO:0051234 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051270 GO:0051272 GO:0051276 GO:0051341 GO:0051354 GO:0051603 GO:0051640 GO:0051641 GO:0051649 GO:0051716 GO:0051787 GO:0051788 GO:0051879 GO:0060255 GO:0060271 GO:0060632 GO:0060765 GO:0061734 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070301 GO:0070727 GO:0070840 GO:0070841 GO:0070842 GO:0070843 GO:0070844 GO:0070845 GO:0070846 GO:0070848 GO:0070887 GO:0070925 GO:0071236 GO:0071310 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0090034 GO:0090035 GO:0090042 GO:0097159 GO:0097237 GO:0097447 GO:0097458 GO:0097708 GO:0098589 GO:0098590 GO:0098732 GO:0098779 GO:0098780 GO:0098805 GO:0098857 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:0140030 GO:0140096 GO:1900407 GO:1900409 GO:1901031 GO:1901033 GO:1901298 GO:1901300 GO:1901363 GO:1901524 GO:1901526 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:1902494 GO:1902679 GO:1902882 GO:1902884 GO:1903146 GO:1903201 GO:1903205 GO:1903209 GO:1903506 GO:1903507 GO:1903599 GO:1904923 GO:1904925 GO:1905206 GO:1990837 GO:2000112 GO:2000113 GO:2000145 GO:2000147 GO:2000377 GO:2000378 GO:2001023 GO:2001025 GO:2001038 GO:2001040 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBP

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

4.78

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBP PF02148 57 - 116 1.5e-18 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014563)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14825
fragaria_vesca FvH4_2g04060
malus_domestica MD05G1097100.v1.1
prunus_persica Prupe.8G141500_v2.0.a1 Prupe.8G141700_v2.0.a1
pyrus_communis pycom05g09570 pycom10g08890
rosa_chinensis RchiOBHm_Chr6g0253281 RchiOBHm_Chr6g0253411
rosa_laevigata RLG00000015021
rosa_multiflora Rmu_sc0001257.1_g000027 Rmu_sc0005439.1_g000006
rosa_roxburghii Rroxscaffold_7G00211920
rosa_rugosa Rorug05G0543800
rosa_samantha Rh6DG046900
rosa_wichuraiana Rw0G000060 Rw6G005300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AatII GACGTC 1 cut(s) 225
Acc16I TGCGCA 2 cut(s) 30, 348
AccB1I GGYRCC 1 cut(s) 409
AciI CCGC 3 cut(s) 235, 359, 367
AclWI GGATC 1 cut(s) 349
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 2 cut(s) 222, 410
AfaI GTAC 1 cut(s) 424
AluBI AGCT 3 cut(s) 14, 77, 297
AluI AGCT 3 cut(s) 14, 77, 297
AlwI GGATC 1 cut(s) 349
AoxI GGCC 2 cut(s) 96, 368
ApeKI GCWGC 2 cut(s) 5, 231
ApoI RAATTY 1 cut(s) 398
AspLEI GCGC 3 cut(s) 31, 349, 412
AspS9I GGNCC 2 cut(s) 37, 97
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 17, 243
BcgI CGANNNNNNTGC 4 cut(s) 90, 101, 124, 135
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 2 cut(s) 229, 298
BfoI RGCGCY 1 cut(s) 413
BisI GCNGC 4 cut(s) 6, 232, 235, 368
BlsI GCNGC 4 cut(s) 7, 233, 236, 369
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 37, 97
BmiI GGNNCC 1 cut(s) 411
BmsI GCATC 2 cut(s) 167, 334
BpmI CTGGAG 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 222, 410
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 416
BseMI GCAATG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 17, 243
BshFI GGCC 2 cut(s) 98, 370
BshNI GGYRCC 1 cut(s) 409
BsiWI CGTACG 1 cut(s) 422
BsnI GGCC 2 cut(s) 98, 370
Bsp143I GATC 3 cut(s) 112, 136, 354
BspACI CCGC 3 cut(s) 235, 359, 367
BspANI GGCC 2 cut(s) 98, 370
BspCNI CTCAG 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 233
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 416
BsrI ACTGG 1 cut(s) 203
BssMI GATC 3 cut(s) 112, 136, 354
BssNI GRCGYC 2 cut(s) 222, 410
Bst4CI ACNGT 1 cut(s) 427
BstACI GRCGYC 2 cut(s) 222, 410
BstAPI GCANNNNNTGC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 169, 182
BstDEI CTNAG 1 cut(s) 293
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 3 cut(s) 31, 349, 412
BstKTI GATC 3 cut(s) 115, 139, 357
BstMBI GATC 3 cut(s) 112, 136, 354
BstMWI GCNNNNNNNGC 5 cut(s) 11, 177, 268, 367, 418
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 229, 298
BstV1I GCAGC 2 cut(s) 17, 243
BsuRI GGCC 2 cut(s) 98, 370
Cac8I GCNNGC 2 cut(s) 169, 182
CfoI GCGC 3 cut(s) 31, 349, 412
Cfr13I GGNCC 2 cut(s) 37, 97
CseI GACGC 1 cut(s) 341
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 253
CviJI RGCY 7 cut(s) 8, 14, 77, 98, 234, 297, 370
CviKI_1 RGCY 7 cut(s) 8, 14, 77, 98, 234, 297, 370
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 293
DinI GGCGCC 1 cut(s) 411
DpnI GATC 3 cut(s) 114, 138, 356
DpnII GATC 3 cut(s) 112, 136, 354
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 37
EgeI GGCGCC 1 cut(s) 411
EheI GGCGCC 1 cut(s) 411
FaeI CATG 1 cut(s) 256
FaiI YATR 7 cut(s) 72, 205, 254, 300, 337, 376, 378
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 4 cut(s) 6, 232, 235, 368
Fsp4HI GCNGC 4 cut(s) 6, 232, 235, 368
FspBI CTAG 1 cut(s) 47
FspI TGCGCA 2 cut(s) 30, 348
GlaI GCGC 3 cut(s) 30, 348, 411
GluI GCNGC 4 cut(s) 6, 232, 235, 368
GsuI CTGGAG 1 cut(s) 242
HaeII RGCGCY 1 cut(s) 413
HaeIII GGCC 2 cut(s) 98, 370
HgaI GACGC 1 cut(s) 341
HhaI GCGC 3 cut(s) 31, 349, 412
Hin1I GRCGYC 2 cut(s) 222, 410
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 3 cut(s) 29, 347, 410
HinP1I GCGC 3 cut(s) 29, 347, 410
HinfI GANTC 1 cut(s) 80
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 136, 396
Hpy188III TCNNGA 2 cut(s) 47, 158
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 171, 231
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 177, 268, 367, 418
HpyF3I CTNAG 1 cut(s) 293
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 2 cut(s) 222, 410
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 3 cut(s) 29, 347, 410
KasI GGCGCC 1 cut(s) 409
Kzo9I GATC 3 cut(s) 112, 136, 354
LmnI GCTCC 2 cut(s) 74, 261
Lsp1109I GCAGC 2 cut(s) 17, 243
LweI GCATC 2 cut(s) 167, 334
MaeI CTAG 1 cut(s) 47
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 302, 329
MalI GATC 3 cut(s) 114, 138, 356
MboI GATC 3 cut(s) 112, 136, 354
MboII GAAGA 3 cut(s) 12, 15, 71
MluCI AATT 2 cut(s) 41, 398
Mly113I GGCGCC 1 cut(s) 410
MnlI CCTC 6 cut(s) 28, 49, 88, 142, 236, 400
MseI TTAA 1 cut(s) 430
MslI CAYNNNNRTG 1 cut(s) 189
MwoI GCNNNNNNNGC 5 cut(s) 11, 177, 268, 367, 418
NarI GGCGCC 1 cut(s) 410
NdeII GATC 3 cut(s) 112, 136, 354
NlaIII CATG 1 cut(s) 256
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 2 cut(s) 302, 329
NsbI TGCGCA 2 cut(s) 30, 348
NspI RCATGY 1 cut(s) 256
PfeI GAWTC 1 cut(s) 80
Pfl23II CGTACG 1 cut(s) 422
PkrI GCNGC 4 cut(s) 7, 233, 236, 369
PluTI GGCGCC 1 cut(s) 413
PspLI CGTACG 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 2 cut(s) 37, 97
PstI CTGCAG 1 cut(s) 233
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 1 cut(s) 189
SaqAI TTAA 1 cut(s) 430
SatI GCNGC 4 cut(s) 6, 232, 235, 368
Sau3AI GATC 3 cut(s) 112, 136, 354
Sau96I GGNCC 2 cut(s) 37, 97
SetI ASST 6 cut(s) 16, 79, 120, 225, 299, 309
SfaNI GCATC 2 cut(s) 167, 334
SfcI CTRYAG 2 cut(s) 229, 298
SfoI GGCGCC 1 cut(s) 411
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 2 cut(s) 41, 398
SsiI CCGC 3 cut(s) 235, 359, 367
SspDI GGCGCC 1 cut(s) 409
SspMI CTAG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 41, 398
TauI GCSGC 2 cut(s) 237, 370
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 430
Tru9I TTAA 1 cut(s) 430
TseFI GTSAC 2 cut(s) 302, 329
TseI GCWGC 2 cut(s) 5, 231
Tsp45I GTSAC 2 cut(s) 302, 329
TspDTI ATGAA 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 398
XbaI TCTAGA 1 cut(s) 46
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 47
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.