Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0020395

Physical Location & Seq

Genomic Coordinates Reverse (-)

19125025 .. 19125273

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTAATCACTCCTGGTCCAAGTGCCTTTCTTACTTTTGCTCTGCAGAAACTCTCCTTCTCGAAGAAGCGGCTGGTGCCGCTGTTTGCTGATATCAAGGCTGAGAACCTTGAGTATCTTGTTAAGTTAGTGAAGGAAGGAAAACTCAAGACGGTAATCGACTCGACACATCCTCTAAGCAAGGCCGAAGATGCTTGGGCTAAGAGTGTCGATGGACATGCAACCGGGAAGGTCATCGTTGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

83

Amino Acids

8.94

Weight (kDa)

9.3

Isoelectric Point (pI)

12.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N_2	PF13602	18 - 80	8.2e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020395)

Species	Orthologous Gene IDs
malus_domestica	MD05G1168100.v1.1 MD05G1168500.v1.1
pyrus_communis	pycom05g15590 pycom05g15640
rosa_multiflora	Rmu_sc0001521.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	2 cut(s)	70, 80
AjnI	CCWGG	1 cut(s)	13
AoxI	GGCC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	76
BccI	CCATC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	226
BfmI	CTRYAG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	71, 80
BlsI	GCNGC	2 cut(s)	72, 81
Bme1390I	CCNGG	2 cut(s)	15, 226
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	15, 226
BmsI	GCATC	1 cut(s)	181
BpuEI	CTTGAG	2 cut(s)	131, 131
BpuMI	CCSGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	225
BsnI	GGCC	1 cut(s)	185
BspACI	CCGC	2 cut(s)	70, 80
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	154
BstDEI	CTNAG	3 cut(s)	102, 176, 201
BstF5I	GGATG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 79, 191
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	13, 224
BstSFI	CTRYAG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	17
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	5 cut(s)	73, 101, 185, 200, 245
CviKI_1	RGCY	5 cut(s)	73, 101, 185, 200, 245
DdeI	CTNAG	3 cut(s)	102, 176, 201
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	1 cut(s)	221
FaiI	YATR	1 cut(s)	219
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	71, 80
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	71, 80
GluI	GCNGC	2 cut(s)	71, 80
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	61, 148
HpyAV	CCTTC	4 cut(s)	67, 127, 131, 223
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	46, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 79, 191
HpyF3I	CTNAG	3 cut(s)	102, 176, 201
Hsp92II	CATG	1 cut(s)	221
LpnPI	CCDG	3 cut(s)	27, 59, 238
LweI	GCATC	1 cut(s)	181
MboII	GAAGA	2 cut(s)	76, 200
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	183, 235
MseI	TTAA	2 cut(s)	123, 247
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	1 cut(s)	225
MspR9I	CCNGG	2 cut(s)	15, 226
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	76, 79, 191
NciI	CCSGG	1 cut(s)	226
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	78
NspI	RCATGY	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	72, 81
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	123, 247
SatI	GCNGC	2 cut(s)	71, 80
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	15, 226
SetI	ASST	2 cut(s)	111, 234
SfaNI	GCATC	1 cut(s)	181
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	110, 146
SmoI	CTYRAG	2 cut(s)	110, 146
SsiI	CCGC	2 cut(s)	70, 80
StyD4I	CCNGG	2 cut(s)	13, 224
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	4 cut(s)	62, 159, 164, 210
TauI	GCSGC	2 cut(s)	73, 82
Tru1I	TTAA	2 cut(s)	123, 247
Tru9I	TTAA	2 cut(s)	123, 247
VpaK11BI	GGWCC	1 cut(s)	17
XceI	RCATGY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.