Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0020395

Physical Location & Seq

Genomic Coordinates Reverse (-)

19148584 .. 19149661

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATATTAACAACTACGGATCTGGCTGGAGAGGTTGTAGAGGTTGGACAAGGAGTGCAAAAGTTCAAACCGGGGGACAAAGTTGTGGCATTTCTGATCCATGCCAATGGAGGTGGATTGGCTGAGTACGCTACAGCTAGTGAGAACTTAACAGTAGCCAGGCCACCTGAAGTATCAGCAGTTGAAGGTGCAGGCTCACCTGTTGCTGGCATTATAGCTCACCAAAGTCTCACGCAAGCTGCTGGGGTCAAGCTGGACGGAAGGGGCCAGCAAAAGAACATATTGATTACTGCTGCCTCTGGGGGCGTGGGTCAGTATGCAGTCCAACTAGCAAAGCTCGGTAACACGCATGTCATAGACATCACTCCTGGTCCAAGTGCTTTTGCTACTTTTGCTCTGAAGAAACTGACATTCTCGAAGAAGCAGCTGGTGCCACTGCTTATGAATGCCAAGGCGGAGAACTTGGAGTATCTTGTTGAGTTGGTGAAGGAAGGAAAGCTCAAGACAGTGATTGACTCGACGCACCCTCTTAGCAAGGCTGAAGATGCTTGGGCTAGGTGTGTAGATGGACACGCGAATGGAAAGATTATTGTCGAGGTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

202

Amino Acids

20.95

Weight (kDa)

7.84

Isoelectric Point (pI)

20.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	6 - 53	1.8e-06	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N_2	PF13602	117 - 198	4.4e-13	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020395)

Species	Orthologous Gene IDs
malus_domestica	MD05G1168100.v1.1 MD05G1168500.v1.1
pyrus_communis	pycom05g15590 pycom05g15640
rosa_multiflora	Rmu_sc0001521.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccII	CGCG	1 cut(s)	575
AciI	CCGC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	27, 91
AcuI	CTGAAG	3 cut(s)	189, 419, 561
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	67, 185
AjnI	CCWGG	2 cut(s)	158, 367
AluBI	AGCT	7 cut(s)	137, 218, 239, 253, 337, 427, 499
AluI	AGCT	7 cut(s)	137, 218, 239, 253, 337, 427, 499
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	27, 91
AoxI	GGCC	2 cut(s)	161, 265
ApeKI	GCWGC	3 cut(s)	239, 293, 424
AspS9I	GGNCC	2 cut(s)	265, 371
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	189, 212, 496
AvaII	GGWCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	226, 280, 436
BccI	CCATC	1 cut(s)	560
BciT130I	CCWGG	2 cut(s)	160, 369
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	3 cut(s)	138, 329, 555
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	3 cut(s)	240, 294, 425
BlsI	GCNGC	3 cut(s)	241, 295, 426
Bme1390I	CCNGG	3 cut(s)	72, 160, 369
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	265, 371
BmiI	GGNNCC	2 cut(s)	266, 432
BmrFI	CCNGG	3 cut(s)	72, 160, 369
BmsI	GCATC	1 cut(s)	535
BpmI	CTGGAG	1 cut(s)	48
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	71, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	160, 369
BseDI	CCNNGG	2 cut(s)	71, 450
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	226, 280, 436
BseYI	CCCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	163, 267
BshNI	GGYRCC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	163, 267
Bsp143I	GATC	2 cut(s)	19, 96
BspACI	CCGC	1 cut(s)	455
BspANI	GGCC	2 cut(s)	163, 267
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	2 cut(s)	266, 432
BspPI	GGATC	2 cut(s)	27, 91
BspT107I	GGYRCC	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	71, 450
BssMI	GATC	2 cut(s)	19, 96
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	160, 369
Bst4CI	ACNGT	2 cut(s)	154, 508
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	4 cut(s)	193, 208, 237, 269
BstDEI	CTNAG	2 cut(s)	123, 530
BstFNI	CGCG	1 cut(s)	575
BstKTI	GATC	2 cut(s)	22, 99
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	19, 96
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 392, 430, 545
BstNI	CCWGG	2 cut(s)	160, 369
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	70, 158, 367
BstSFI	CTRYAG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	226, 280, 436
BstX2I	RGATCY	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	163, 267
BtsI	GCAGTG	1 cut(s)	434
BtsIMutI	CAGTG	2 cut(s)	434, 513
Cac8I	GCNNGC	4 cut(s)	193, 208, 237, 269
Cfr13I	GGNCC	2 cut(s)	265, 371
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	127
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	2 cut(s)	101, 350
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	123, 530
DpnI	GATC	2 cut(s)	21, 98
DpnII	GATC	2 cut(s)	19, 96
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	3 cut(s)	189, 419, 561
EcoRII	CCWGG	2 cut(s)	158, 367
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	2 cut(s)	104, 353
FaiI	YATR	7 cut(s)	102, 215, 281, 318, 351, 356, 443
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	100, 349
Fnu4HI	GCNGC	3 cut(s)	240, 294, 425
Fsp4HI	GCNGC	3 cut(s)	240, 294, 425
FspBI	CTAG	3 cut(s)	138, 329, 555
GluI	GCNGC	3 cut(s)	240, 294, 425
GsaI	CCCAGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	2 cut(s)	163, 267
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	529
Hin1II	CATG	2 cut(s)	104, 353
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	189, 212, 496
Hpy188I	TCNGA	2 cut(s)	96, 399
Hpy188III	TCNNGA	2 cut(s)	415, 502
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	4 cut(s)	179, 255, 481, 485
HpyCH4III	ACNGT	2 cut(s)	154, 508
HpyCH4V	TGCA	3 cut(s)	58, 191, 320
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 392, 430, 545
HpyF3I	CTNAG	2 cut(s)	123, 530
Hsp92II	CATG	2 cut(s)	104, 353
Kzo9I	GATC	2 cut(s)	19, 96
Lsp1109I	GCAGC	3 cut(s)	226, 280, 436
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	3 cut(s)	138, 329, 555
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	21, 98
MboI	GATC	2 cut(s)	19, 96
MboII	GAAGA	3 cut(s)	412, 430, 554
MflI	RGATCY	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	25, 349
MnlI	CCTC	6 cut(s)	25, 34, 104, 307, 537, 589
MseI	TTAA	3 cut(s)	8, 149, 600
MslI	CAYNNNNRTG	2 cut(s)	105, 576
MspA1I	CMGCKG	1 cut(s)	427
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	3 cut(s)	72, 160, 369
Mva1269I	GAATGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	160, 369
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	4 cut(s)	128, 392, 430, 545
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	19, 96
NlaIII	CATG	2 cut(s)	104, 353
NlaIV	GGNNCC	2 cut(s)	266, 432
NspI	RCATGY	1 cut(s)	353
PctI	GAATGC	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	241, 295, 426
PleI	GAGTC	1 cut(s)	509
PpsI	GAGTC	1 cut(s)	509
Psp6I	CCWGG	2 cut(s)	158, 367
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	2 cut(s)	158, 367
PspN4I	GGNNCC	2 cut(s)	266, 432
PspPI	GGNCC	2 cut(s)	265, 371
PsuI	RGATCY	1 cut(s)	19
PvuII	CAGCTG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
RseI	CAYNNNNRTG	2 cut(s)	105, 576
SaqAI	TTAA	3 cut(s)	8, 149, 600
SatI	GCNGC	3 cut(s)	240, 294, 425
Sau3AI	GATC	2 cut(s)	19, 96
Sau96I	GGNCC	2 cut(s)	265, 371
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	3 cut(s)	72, 160, 369
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	105, 576
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SsiI	CCGC	1 cut(s)	455
SspMI	CTAG	3 cut(s)	138, 329, 555
StyD4I	CCNGG	3 cut(s)	70, 158, 367
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	2 cut(s)	154, 508
TaqI	TCGA	3 cut(s)	416, 518, 594
Tru1I	TTAA	3 cut(s)	8, 149, 600
Tru9I	TTAA	3 cut(s)	8, 149, 600
TscAI	CASTG	2 cut(s)	441, 513
TseI	GCWGC	3 cut(s)	239, 293, 424
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	2 cut(s)	32, 273
TspRI	CASTG	2 cut(s)	441, 513
VpaK11BI	GGWCC	1 cut(s)	371
XceI	RCATGY	1 cut(s)	353
XspI	CTAG	3 cut(s)	138, 329, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.