Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0019319

Physical Location & Seq

Genomic Coordinates Reverse (-)

21824937 .. 21825278

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGTGAGAAATTTTGGGTGAATGAAGAAGACAAGGTCGTGATGGAGTCGGTACTGGGTACCGAAGCGTGCCAATTCTTGATCTCACTGGCTTCCGAAAATGTTTTGTCAGAATTGATTAGGCCGCCGGGTAAATTGGGTGTGCAGCAGGGGCTGTGCCACCTTGTCAAAGGGTCGAATTGGAATTATTTCATTTTCTGGCAGGCTGTTAGCAAGAAATCTGGTGGATCTGCCTTGATTTGGGGTGATGGGCATTGCAGAGACACCAAGGGCGGTGGAACTGGGGACGTGAATTCTAGTCGGATGGTAGTTTGGAGGCAATGCAGAAGAAAGAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

114

Amino Acids

12.62

Weight (kDa)

9.24

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	49 - 94	7.6e-13	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019319)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g18910
rosa_chinensis	RchiOBHm_Chr6g0268101
rosa_samantha	Rh6AG158800 Rh6BG153600 Rh6BG163000 Rh6CG155500 Rh6DG138400 Rh6DG148800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	2 cut(s)	125, 273
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	11, 292
AfaI	GTAC	2 cut(s)	54, 61
AfiI	CCNNNNNNNGG	1 cut(s)	240
AjiI	CACGTC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	154
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	2 cut(s)	11, 292
Asp700I	GAANNNNTTC	1 cut(s)	188
Asp718I	GGTACC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	3 cut(s)	17, 31, 257
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	3 cut(s)	37, 242, 298
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	255
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	2 cut(s)	125, 146
BlsI	GCNGC	2 cut(s)	126, 147
Bme1390I	CCNGG	1 cut(s)	129
BmgBI	CACGTC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	2 cut(s)	65, 291
BmuI	ACTGGG	2 cut(s)	65, 291
BpiI	GAAGAC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	3 cut(s)	60, 93, 286
Bse3DI	GCAATG	2 cut(s)	253, 326
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	2 cut(s)	253, 326
BseNI	ACTGG	3 cut(s)	60, 93, 286
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	81, 227
BspACI	CCGC	2 cut(s)	125, 273
BspANI	GGCC	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	253, 326
BsrI	ACTGG	3 cut(s)	60, 93, 286
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	81, 227
BssT1I	CCWWGG	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	70, 204
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	2 cut(s)	84, 230
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	2 cut(s)	81, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	70, 204
CaiI	CAGNNNCTG	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	53, 60
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviJI	RGCY	4 cut(s)	92, 124, 154, 206
CviKI_1	RGCY	4 cut(s)	92, 124, 154, 206
CviQI	GTAC	2 cut(s)	53, 60
DpnI	GATC	2 cut(s)	83, 229
DpnII	GATC	2 cut(s)	81, 227
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaqI	GGGAC	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	125, 146
FokI	GGATG	1 cut(s)	316
Fsp4HI	GCNGC	2 cut(s)	125, 146
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	2 cut(s)	125, 146
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	3 cut(s)	17, 31, 257
Hpy188I	TCNGA	3 cut(s)	97, 112, 303
Hpy188III	TCNNGA	2 cut(s)	40, 79
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	145, 258, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	288
KpnI	GGTACC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	81, 227
LpnPI	CCDG	8 cut(s)	41, 74, 134, 141, 184, 188, 207, 267
Lsp1109I	GCAGC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	288
MalI	GATC	2 cut(s)	83, 229
MboI	GATC	2 cut(s)	81, 227
MboII	GAAGA	3 cut(s)	38, 41, 339
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	7 cut(s)	11, 74, 113, 134, 178, 184, 292
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	2 cut(s)	309, 330
MroXI	GAANNNNTTC	1 cut(s)	188
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	81, 227
NlaIV	GGNNCC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	126, 147
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	61
PstNI	CAGNNNCTG	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	227
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	2 cut(s)	54, 61
RsaNI	GTAC	2 cut(s)	53, 60
SatI	GCNGC	2 cut(s)	125, 146
Sau3AI	GATC	2 cut(s)	81, 227
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	39, 165, 291, 341
Sse9I	AATT	7 cut(s)	11, 74, 113, 134, 178, 184, 292
SsiI	CCGC	2 cut(s)	125, 273
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	267
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	176
TasI	AATT	7 cut(s)	11, 74, 113, 134, 178, 184, 292
TauI	GCSGC	1 cut(s)	127
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	39, 181
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	35
XapI	RAATTY	2 cut(s)	11, 292
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.