Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0019319

Physical Location & Seq

Genomic Coordinates Forward (+)

19950492 .. 19951234

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG138400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGTGAGAAGCTTTGGGTGAATGAGGAAGAAAAGGTCATAGTGGAGTCAGTACCAGGCACCGAAGCGTGCCAGGTGTTGATCTCATTGGCTTTGGAGAACTTGTTGTCCGTCTTGGCTAGGCCTCCGGGACAATTGGGAGTGCAGCTGGGGCTGTCCCAGCTTGTCCAAGGGTCCAGTTGGGATTACGCTGCCTTCTGGCAGGTTGTGGGATTGAAATCTGGTGGAGCTGCCTTGATTTGGGGTGATGGACATTGCAGAGACACCAAGGGTGGTGGGGTTGGAGACGAGAGTTCTAGTAGAGATAGCAACTTGGAGGGAGTGCAGAAGAAGAATGCGGAGGTGAGTGGGTGCTTGGGAAGCTCCACTCATGTTTCGGTGGTTCGGGTGAGGATAACTATGCGAGGAGGAGTTGTGGAGCTTGGTTCAGTCAAATCAATTCCGGAAGAACAGAATATTGTGGATGTGGTCAGAAGTGTATTTGGAGAATCTAGCTCTGTTCAAGCAAAGGTATATCCAAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH bHLH-MYC_N

Protein Analysis

175

Amino Acids

18.47

Weight (kDa)

5.24

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	50 - 112	1.9e-11	bHLH-MYC and R2R3-MYB transcription factors N-terminal
bHLH-MYC_N	PF14215	130 - 161	9.2e-06	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019319)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g18910
rosa_chinensis	RchiOBHm_Chr6g0268101
rosa_samantha	Rh6AG158800 Rh6BG153600 Rh6BG163000 Rh6CG155500 Rh6DG138400 Rh6DG148800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	1 cut(s)	338
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	2 cut(s)	217, 503
AjnI	CCWGG	2 cut(s)	55, 72
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	8 cut(s)	13, 148, 163, 230, 363, 421, 495, 525
AluI	AGCT	8 cut(s)	13, 148, 163, 230, 363, 421, 495, 525
Alw26I	GTCTC	2 cut(s)	255, 279
Aor13HI	TCCGGA	1 cut(s)	442
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	145, 191, 230
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	5 cut(s)	17, 31, 257, 355, 400
AvaII	GGWCC	1 cut(s)	174
BanI	GGYRCC	1 cut(s)	59
BbvI	GCAGC	3 cut(s)	157, 178, 217
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	57, 74
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	255, 279
BfaI	CTAG	3 cut(s)	120, 297, 492
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	3 cut(s)	146, 192, 231
BlsI	GCNGC	3 cut(s)	147, 193, 232
Bme1390I	CCNGG	3 cut(s)	57, 74, 129
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	61, 175
BmrFI	CCNGG	3 cut(s)	57, 74, 129
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	169, 267
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 399, 429
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	217
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	57, 74
BseDI	CCNNGG	2 cut(s)	169, 267
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	253
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	2 cut(s)	420, 423
BseXI	GCAGC	3 cut(s)	157, 178, 217
BseYI	CCCAGC	2 cut(s)	148, 159
BsgI	GTGCAG	2 cut(s)	164, 344
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	128, 443
BslFI	GGGAC	2 cut(s)	142, 144
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	255, 279
BsmBI	CGTCTC	1 cut(s)	279
BsmFI	GGGAC	2 cut(s)	142, 144
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	61, 175
BspMI	ACCTGC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	169, 267
BssMI	GATC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	169, 267
Bst2UI	CCWGG	2 cut(s)	57, 74
BstC8I	GCNNGC	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	2 cut(s)	255, 279
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 160, 360
BstNI	CCWGG	2 cut(s)	57, 74
BstSCI	CCNGG	3 cut(s)	55, 72, 127
BstV1I	GCAGC	3 cut(s)	157, 178, 217
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	53
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	1 cut(s)	371
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	169, 267
Eco147I	AGGCCT	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	174
EcoRII	CCWGG	2 cut(s)	55, 72
EcoT14I	CCWWGG	2 cut(s)	169, 267
ErhI	CCWWGG	2 cut(s)	169, 267
Esp3I	CGTCTC	1 cut(s)	279
FaeI	CATG	1 cut(s)	374
FaiI	YATR	4 cut(s)	41, 372, 401, 514
FaqI	GGGAC	2 cut(s)	142, 144
FatI	CATG	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	146, 192, 231
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	146, 192, 231
FspBI	CTAG	3 cut(s)	120, 297, 492
GluI	GCNGC	3 cut(s)	146, 192, 231
GsaI	CCCAGC	2 cut(s)	152, 163
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	128, 443
Hin1II	CATG	1 cut(s)	374
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	47, 488
HpaII	CCGG	2 cut(s)	128, 443
HphI	GGTGA	5 cut(s)	17, 31, 257, 355, 400
Hpy188I	TCNGA	1 cut(s)	473
Hpy188III	TCNNGA	1 cut(s)	443
HpyAV	CCTTC	1 cut(s)	205
HpyCH4V	TGCA	3 cut(s)	145, 258, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 160, 360
Hsp92II	CATG	1 cut(s)	374
Kpn2I	TCCGGA	1 cut(s)	442
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	3 cut(s)	227, 368, 418
Lsp1109I	GCAGC	3 cut(s)	157, 178, 217
MaeI	CTAG	3 cut(s)	120, 297, 492
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	4 cut(s)	41, 340, 343, 458
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	2 cut(s)	134, 438
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	7 cut(s)	19, 135, 310, 334, 384, 398, 401
MroI	TCCGGA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	2 cut(s)	128, 443
MspR9I	CCNGG	3 cut(s)	57, 74, 129
MunI	CAATTG	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	57, 74
MwoI	GCNNNNNNNGC	3 cut(s)	151, 160, 360
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	2 cut(s)	61, 175
PceI	AGGCCT	1 cut(s)	124
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	147, 193, 232
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	55, 72
PspFI	CCCAGC	2 cut(s)	148, 159
PspGI	CCWGG	2 cut(s)	55, 72
PspN4I	GGNNCC	2 cut(s)	61, 175
PspPI	GGNCC	1 cut(s)	174
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
SatI	GCNGC	3 cut(s)	146, 192, 231
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	57, 74, 129
SinI	GGWCC	1 cut(s)	174
Sse9I	AATT	2 cut(s)	134, 438
SseBI	AGGCCT	1 cut(s)	124
SsiI	CCGC	1 cut(s)	338
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	3 cut(s)	120, 297, 492
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	55, 72, 127
StyI	CCWWGG	2 cut(s)	169, 267
TasI	AATT	2 cut(s)	134, 438
TfiI	GAWTC	1 cut(s)	488
TseI	GCWGC	3 cut(s)	145, 191, 230
TspGWI	ACGGA	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	174
XspI	CTAG	3 cut(s)	120, 297, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.