Rh6CG155500
BHLH Family

Transcription factor bHLH3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019319
Physical Location & Seq
Forward (+)
20157334 .. 20157687
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG155500.1

Sequence Viewer

Length: 354 bp
ATGGGTGAGAAGCTTTGGGTGAATGAGGAAGAAAAGGTCATAGTGGAGTCAGTACTAGGCACCGAAGCGCGCCAGGTGTTGATTTCATTGGCTTCGGAGAACTTGTTGTCCGACTTGGCTAGGCGTCCGGGACAATTGGGAGTGCAGCAGGGGCTGTCCCAGCTTGTCCAAGGGTCCAGTTGGGATTACGCTGTCTTCTGGCAGGTTGTGGGATTGAAATCTGGTGGAGCTGCCTTGATTTGGGGTGATGGACATTGCAGAGACACCAAGGGTGGTGGGGTGGTGGGGTTGGAGACGAGAGTTCTAGTAGAGATAGCAACTTGGAGGGAGTGCAGAAGAAGAATGTGGAGGTGA

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

6.58

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 49 - 90 1.5e-12 bHLH-MYC and R2R3-MYB transcription factors N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019319)

Species Orthologous Gene IDs
pyrus_communis pycom05g18910
rosa_chinensis RchiOBHm_Chr6g0268101
rosa_samantha Rh6AG158800 Rh6BG153600 Rh6BG163000 Rh6CG155500 Rh6DG138400 Rh6DG148800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 124
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 1 cut(s) 72
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 13, 163, 230
AluI AGCT 3 cut(s) 13, 163, 230
Alw26I GTCTC 2 cut(s) 255, 287
AlwNI CAGNNNCTG 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 145, 230
AspLEI GCGC 2 cut(s) 70, 72
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 3 cut(s) 17, 31, 257
AvaII GGWCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 157, 217
BccI CCATC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 74
BcnI CCSGG 1 cut(s) 129
BcoDI GTCTC 2 cut(s) 255, 287
BfaI CTAG 3 cut(s) 56, 120, 305
BfuAI ACCTGC 1 cut(s) 193
BisI GCNGC 2 cut(s) 146, 231
BlsI GCNGC 2 cut(s) 147, 232
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 2 cut(s) 74, 129
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 2 cut(s) 61, 175
BmrFI CCNGG 2 cut(s) 74, 129
BpiI GAAGAC 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 217
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 169, 267
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 177
Bse3DI GCAATG 1 cut(s) 253
Bse8I GATNNNNATC 1 cut(s) 217
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 2 cut(s) 169, 267
BseJI GATNNNNATC 1 cut(s) 217
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 177
BsePI GCGCGC 1 cut(s) 68
BseXI GCAGC 2 cut(s) 157, 217
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 2 cut(s) 164, 352
Bsh1236I CGCG 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 142, 144
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 2 cut(s) 255, 287
BsmBI CGTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 142, 144
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 61, 175
BspMI ACCTGC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 169, 267
BssHII GCGCGC 1 cut(s) 68
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 169, 267
Bst2UI CCWGG 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 70
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 2 cut(s) 70, 72
BstMAI GTCTC 2 cut(s) 255, 287
BstMWI GCNNNNNNNGC 2 cut(s) 151, 160
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 72, 127
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 157, 217
BstV2I GAAGAC 1 cut(s) 187
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 70
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 2 cut(s) 70, 72
Cfr13I GGNCC 1 cut(s) 174
CseI GACGC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 53
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviJI RGCY 6 cut(s) 13, 92, 119, 154, 163, 230
CviKI_1 RGCY 6 cut(s) 13, 92, 119, 154, 163, 230
CviQI GTAC 1 cut(s) 53
Eco130I CCWWGG 2 cut(s) 169, 267
Eco47I GGWCC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 2 cut(s) 169, 267
ErhI CCWWGG 2 cut(s) 169, 267
Esp3I CGTCTC 1 cut(s) 287
FaiI YATR 1 cut(s) 41
FaqI GGGAC 2 cut(s) 142, 144
Fnu4HI GCNGC 2 cut(s) 146, 231
Fsp4HI GCNGC 2 cut(s) 146, 231
FspBI CTAG 3 cut(s) 56, 120, 305
GlaI GCGC 2 cut(s) 69, 71
GluI GCNGC 2 cut(s) 146, 231
GsaI CCCAGC 1 cut(s) 163
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 113
HhaI GCGC 2 cut(s) 70, 72
Hin1I GRCGYC 1 cut(s) 124
Hin6I GCGC 2 cut(s) 68, 70
HinP1I GCGC 2 cut(s) 68, 70
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 128
HphI GGTGA 3 cut(s) 17, 31, 257
Hpy188I TCNGA 2 cut(s) 97, 112
HpyCH4V TGCA 3 cut(s) 145, 258, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 160
Hsp92I GRCGYC 1 cut(s) 124
HspAI GCGC 2 cut(s) 68, 70
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 9 cut(s) 59, 86, 134, 141, 173, 184, 188, 190, 207
Lsp1109I GCAGC 2 cut(s) 157, 217
MaeI CTAG 3 cut(s) 56, 120, 305
MboII GAAGA 4 cut(s) 41, 187, 348, 351
MfeI CAATTG 1 cut(s) 134
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 2 cut(s) 135, 270
MnlI CCTC 3 cut(s) 19, 318, 342
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 74, 129
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 151, 160
NciI CCSGG 1 cut(s) 129
NlaIV GGNNCC 2 cut(s) 61, 175
PauI GCGCGC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 147, 232
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 2 cut(s) 61, 175
PspPI GGNCC 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 154
PteI GCGCGC 1 cut(s) 68
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SatI GCNGC 2 cut(s) 146, 231
Sau96I GGNCC 1 cut(s) 174
ScaI AGTACT 1 cut(s) 54
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 74, 129
SetI ASST 7 cut(s) 15, 39, 78, 165, 207, 232, 353
SinI GGWCC 1 cut(s) 174
Sse9I AATT 1 cut(s) 134
SspMI CTAG 3 cut(s) 56, 120, 305
StyD4I CCNGG 2 cut(s) 72, 127
StyI CCWWGG 2 cut(s) 169, 267
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 52
TseI GCWGC 2 cut(s) 145, 230
TspDTI ATGAA 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 174
XspI CTAG 3 cut(s) 56, 120, 305
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.