pycom05g20650

Nucleolar complex protein 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0010460
Physical Location & Seq
Reverse (-)
23420288 .. 23426649
6362 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1524 bp
ATGGGGGCGAAGAGGAAGCAAAAGCAGAAAATCATTCTACCTCCTGACCTCCCACCGGAGGTCTCAGAGGACGAAATTGAAATCTCCGACGAGGACAAGGACTTCGTCGATAAGAACAAAGAATACGCTGGCTTCCTCTCCACCTTGGACACCCAATCCATTACCAAGCATGTTACCCGGGTTGCCGATGTGAAGGAGGATGCTTTGGAAGCTTTTTATGAAAAGCGCTTAAAAAGGAAATCCTTGCAGAAAGAAAAAGAGGAGGATACTGAGCTTCAAGTTGATCGTGTAGATGCTCTTCCTGTTAAAACCTTAGATGGACAACTCTACTATCGAACAGCAGCAAAGACAACAAAAGCATCCGAGAATGATCGATCTGAAGAGGTAACCAGTGGCGCTGCAGATAAAGGGATAGTTAAGCTGACAAAGGCTGAAAGGAGGGCAAAGCTCAAGAAAAGTAAGAAAGAGGCAAAAAAACAAGGAAAGGATGCTGAACCTGAAGTCGAACAAACTCCTCAAGAAGCAGTGCTGGCTGAGGTTAAACAAGATCGTACAGCTGAAGAAGCATTTGAAAGTAAGAAGAATAAACTTGCAGAGCTGGGAATGGCGCTGCTTTCTGATCCGGAGTCGAATATAAAATCTTTGAAGGAGATTTTACAAATATGTAAAGATAATAATCATGCAATAGTCAAACTTGGACTCCTATCTTTGTTGGCTGTGTTTAAAGACATTATTCCTGGATACCGGATTAGGCTTCCGACTGAGAAGGAGCTGGAAATGAAGGTTTCAAAGGATGTTAAGAAAATGCGGCTTTATGAATCAACACTGCTATCTGTGTACAAGGCATACCTGCAGAAGTTGGCAGCATTAGAAAAACAGCCCTCTTTCCAACATGTAGCATTTCGCTGTATCTGTACATTGCTTGAGGCAGCACCTCACTTCAACTTCCGGGAGAGCTTGTTAGGTGTTGTTATCAGAAACATAGGCTACCCAGATGACGTTGTAAGGAAACTATGTTGTTCAACTGTAAAGTCACTTTTTACAAACGAGGGAAAACATAATGGCGAAGCTACTGTGGAGGCTGTTCGTTTAATTGCAAATCATGTGAAAGCTCAGAATTGCCAACTGCACCCTGATTCATTGGAGGTTTTCTTGTATTTGTCATTTGATGAAGATCTTGGGAGGGCTGCAAGAGATGAGAAATTTAAACCCCAAAGCAAGAAAAGTAAGAAAAAGAAGCATTATGAGGAGGCTCGTCAACAGAAGGAAAATGAAAAGAAACGGAGCAGGCAAGAATTATTGGCGAAGACTAGAGAGGAGGTCGTTGCTGATTACAAGGCTGTTGCTTTTGCCCCAGATGTTATGGAGCGGAGAGGAATGCAGACAGAGACACTTTCTGCTGTATTTGAAATATATTTTCGTATATTGAAACATACGATGCAATCAGCTGCCAGCGATCTGAAGCAAATGCTGGTTCATCAACTGGTGCAGCTGAGCCCCACCCTTTACTTGCTCCGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBF NOC3p

Protein Analysis

508

Amino Acids

57.85

Weight (kDa)

8.94

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOC3p PF07540 193 - 283 3.2e-31 Nucleolar complex-associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 858
AccBSI CCGCTC 1 cut(s) 1369
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 2 cut(s) 808, 1369
AclWI GGATC 1 cut(s) 614
AcsI RAATTY 1 cut(s) 1202
AcuI CTGAAG 4 cut(s) 399, 519, 579, 1481
AfaI GTAC 3 cut(s) 553, 839, 916
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 55, 58
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 9 cut(s) 80, 278, 572, 646, 789, 943, 1023, 1409, 1429
AjnI CCWGG 1 cut(s) 736
Alw26I GTCTC 2 cut(s) 67, 1382
AlwI GGATC 1 cut(s) 614
Ama87I CYCGRG 1 cut(s) 177
Aor13HI TCCGGA 1 cut(s) 622
Aor51HI AGCGCT 1 cut(s) 227
ApeKI GCWGC 8 cut(s) 341, 398, 610, 863, 929, 1187, 1448, 1489
ApoI RAATTY 1 cut(s) 1202
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 3 cut(s) 228, 398, 610
AsuC2I CCSGG 3 cut(s) 178, 179, 950
AvaI CYCGRG 1 cut(s) 177
BanII GRGCYC 1 cut(s) 1499
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BbsI GAAGAC 1 cut(s) 1313
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 8 cut(s) 353, 385, 597, 875, 941, 1174, 1435, 1501
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 738
BciVI GTATCC 2 cut(s) 259, 734
BcnI CCSGG 3 cut(s) 178, 179, 950
BcoDI GTCTC 2 cut(s) 67, 1382
BfaI CTAG 1 cut(s) 1311
BfmI CTRYAG 2 cut(s) 399, 851
BfoI RGCGCY 3 cut(s) 229, 399, 611
BfuAI ACCTGC 1 cut(s) 858
BfuI GTATCC 2 cut(s) 259, 734
BglII AGATCT 1 cut(s) 1174
BisI GCNGC 9 cut(s) 342, 399, 611, 809, 864, 930, 1188, 1449, 1490
BlpI GCTNAGC 1 cut(s) 1493
BlsI GCNGC 9 cut(s) 343, 400, 612, 810, 865, 931, 1189, 1450, 1491
Bme1390I CCNGG 4 cut(s) 178, 179, 738, 950
BmeT110I CYCGRG 1 cut(s) 177
BmrFI CCNGG 4 cut(s) 178, 179, 738, 950
BmsI GCATC 5 cut(s) 190, 283, 368, 478, 1428
BpiI GAAGAC 1 cut(s) 1313
Bpu10I CCTNAGC 1 cut(s) 534
Bpu1102I GCTNAGC 1 cut(s) 1493
BpuEI CTTGAG 3 cut(s) 434, 501, 944
BpuMI CCSGG 3 cut(s) 178, 179, 950
Bsa29I ATCGAT 1 cut(s) 373
BsaBI GATNNNNATC 2 cut(s) 675, 1173
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 144, 177
BsaWI WCCGGW 3 cut(s) 55, 622, 744
BsaXI ACNNNNNCTCC 4 cut(s) 684, 714, 944, 974
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 58
Bse1I ACTGG 2 cut(s) 390, 1488
Bse3DI GCAATG 1 cut(s) 917
Bse8I GATNNNNATC 2 cut(s) 675, 1173
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 1 cut(s) 738
BseCI ATCGAT 1 cut(s) 373
BseDI CCNNGG 2 cut(s) 144, 177
BseGI GGATG 4 cut(s) 205, 359, 493, 799
BseJI GATNNNNATC 2 cut(s) 675, 1173
BseLI CCNNNNNNNGG 2 cut(s) 55, 58
BseMI GCAATG 1 cut(s) 917
BseMII CTCAG 6 cut(s) 78, 261, 525, 753, 1127, 1484
BseNI ACTGG 2 cut(s) 390, 1488
BseRI GAGGAG 4 cut(s) 275, 504, 1262, 1331
BseXI GCAGC 8 cut(s) 353, 385, 597, 875, 941, 1174, 1435, 1501
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 2 cut(s) 1112, 1508
BshVI ATCGAT 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 5 cut(s) 56, 178, 623, 745, 949
BslI CCNNNNNNNGG 2 cut(s) 55, 58
BsmAI GTCTC 2 cut(s) 67, 1382
BsmI GAATGC 1 cut(s) 1383
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 1499
Bsp13I TCCGGA 1 cut(s) 622
Bsp1407I TGTACA 2 cut(s) 837, 914
Bsp143I GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
Bsp1720I GCTNAGC 1 cut(s) 1493
BspACI CCGC 2 cut(s) 808, 1369
BspCNI CTCAG 6 cut(s) 77, 262, 526, 754, 1126, 1485
BspDI ATCGAT 1 cut(s) 373
BspEI TCCGGA 1 cut(s) 622
BspMAI CTGCAG 2 cut(s) 403, 855
BspMI ACCTGC 1 cut(s) 858
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 303
BspTNI GGTCTC 1 cut(s) 67
BsrBI CCGCTC 1 cut(s) 1369
BsrDI GCAATG 1 cut(s) 917
BsrGI TGTACA 2 cut(s) 837, 914
BsrI ACTGG 2 cut(s) 390, 1488
BssECI CCNNGG 2 cut(s) 144, 177
BssMI GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 2 cut(s) 1027, 1075
Bst6I CTCTTC 3 cut(s) 5, 303, 375
BstAUI TGTACA 2 cut(s) 837, 914
BstC8I GCNNGC 4 cut(s) 130, 531, 1289, 1453
BstDEI CTNAG 7 cut(s) 64, 270, 313, 534, 762, 1113, 1493
BstEII GGTNACC 1 cut(s) 385
BstF5I GGATG 4 cut(s) 205, 359, 493, 799
BstH2I RGCGCY 3 cut(s) 229, 399, 611
BstHHI GCGC 3 cut(s) 228, 398, 610
BstKTI GATC 7 cut(s) 286, 373, 377, 550, 622, 1177, 1459
BstMAI GTCTC 2 cut(s) 67, 1382
BstMBI GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
BstMWI GCNNNNNNNGC 3 cut(s) 209, 530, 563
BstNI CCWGG 1 cut(s) 738
BstNSI RCATGY 2 cut(s) 173, 896
BstPI GGTNACC 1 cut(s) 385
BstSCI CCNGG 4 cut(s) 176, 177, 736, 948
BstSFI CTRYAG 2 cut(s) 399, 851
BstV1I GCAGC 8 cut(s) 353, 385, 597, 875, 941, 1174, 1435, 1501
BstV2I GAAGAC 1 cut(s) 1313
BstX2I RGATCY 1 cut(s) 1174
BstYI RGATCY 1 cut(s) 1174
Bsu15I ATCGAT 1 cut(s) 373
BsuI GTATCC 2 cut(s) 259, 734
BsuTUI ATCGAT 1 cut(s) 373
BtsCI GGATG 4 cut(s) 205, 359, 493, 799
BtsI GCAGTG 2 cut(s) 531, 824
BtsIMutI CAGTG 3 cut(s) 397, 531, 824
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 4 cut(s) 130, 531, 1289, 1453
CfoI GCGC 3 cut(s) 228, 398, 610
Cfr9I CCCGGG 1 cut(s) 177
ClaI ATCGAT 1 cut(s) 373
Csp6I GTAC 3 cut(s) 552, 838, 915
CviAII CATG 4 cut(s) 170, 680, 893, 1103
CviQI GTAC 3 cut(s) 552, 838, 915
DdeI CTNAG 7 cut(s) 64, 270, 313, 534, 762, 1113, 1493
DpnI GATC 7 cut(s) 285, 372, 376, 549, 621, 1176, 1458
DpnII GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
DraI TTTAAA 2 cut(s) 724, 1207
Eam1104I CTCTTC 3 cut(s) 5, 303, 375
EarI CTCTTC 3 cut(s) 5, 303, 375
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 1499
Eco31I GGTCTC 1 cut(s) 67
Eco47III AGCGCT 1 cut(s) 227
Eco57I CTGAAG 4 cut(s) 399, 519, 579, 1481
Eco88I CYCGRG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 385
EcoO65I GGTNACC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 736
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 1499
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 4 cut(s) 173, 683, 896, 1106
FatI CATG 4 cut(s) 169, 679, 892, 1102
Fnu4HI GCNGC 9 cut(s) 342, 399, 611, 809, 864, 930, 1188, 1449, 1490
FokI GGATG 4 cut(s) 212, 346, 500, 806
FriOI GRGCYC 1 cut(s) 1499
Fsp4HI GCNGC 9 cut(s) 342, 399, 611, 809, 864, 930, 1188, 1449, 1490
FspBI CTAG 1 cut(s) 1311
GlaI GCGC 3 cut(s) 227, 397, 609
GluI GCNGC 9 cut(s) 342, 399, 611, 809, 864, 930, 1188, 1449, 1490
GsaI CCCAGC 1 cut(s) 602
HaeII RGCGCY 3 cut(s) 229, 399, 611
HapII CCGG 5 cut(s) 56, 178, 623, 745, 949
HhaI GCGC 3 cut(s) 228, 398, 610
Hin1II CATG 4 cut(s) 173, 683, 896, 1106
Hin6I GCGC 3 cut(s) 226, 396, 608
HinP1I GCGC 3 cut(s) 226, 396, 608
HincII GTYRAC 1 cut(s) 1259
HindII GTYRAC 1 cut(s) 1259
HindIII AAGCTT 1 cut(s) 210
HinfI GANTC 4 cut(s) 626, 699, 818, 1136
HpaII CCGG 5 cut(s) 56, 178, 623, 745, 949
Hpy166II GTNNAC 2 cut(s) 838, 1259
Hpy188III TCNNGA 4 cut(s) 44, 451, 518, 623
Hpy8I GTNNAC 2 cut(s) 838, 1259
Hpy99I CGWCG 2 cut(s) 92, 110
HpyAV CCTTC 5 cut(s) 187, 640, 760, 775, 1258
HpyCH4III ACNGT 2 cut(s) 1027, 1075
HpyCH4IV ACGT 1 cut(s) 999
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 530, 563
HpyF3I CTNAG 7 cut(s) 64, 270, 313, 534, 762, 1113, 1493
HpySE526I ACGT 1 cut(s) 999
Hsp92II CATG 4 cut(s) 173, 683, 896, 1106
HspAI GCGC 3 cut(s) 226, 396, 608
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 4 cut(s) 769, 1284, 1366, 1518
Lsp1109I GCAGC 8 cut(s) 353, 385, 597, 875, 941, 1174, 1435, 1501
LweI GCATC 5 cut(s) 190, 283, 368, 478, 1428
MaeI CTAG 1 cut(s) 1311
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 3 cut(s) 172, 385, 1032
MalI GATC 7 cut(s) 285, 372, 376, 549, 621, 1176, 1458
MbiI CCGCTC 1 cut(s) 1369
MboI GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
MboII GAAGA 7 cut(s) 22, 290, 392, 572, 592, 1184, 1318
MflI RGATCY 1 cut(s) 1174
MhlI GDGCHC 1 cut(s) 1499
MluCI AATT 5 cut(s) 75, 1092, 1117, 1202, 1295
MlyI GAGTC 2 cut(s) 635, 693
MmeI TCCRAC 3 cut(s) 111, 782, 913
MroI TCCGGA 1 cut(s) 622
MseI TTAA 8 cut(s) 230, 306, 417, 540, 723, 798, 1091, 1206
MspA1I CMGCKG 3 cut(s) 557, 1448, 1492
MspI CCGG 5 cut(s) 56, 178, 623, 745, 949
MspR9I CCNGG 4 cut(s) 178, 179, 738, 950
Mva1269I GAATGC 1 cut(s) 1383
MvaI CCWGG 1 cut(s) 738
MwoI GCNNNNNNNGC 3 cut(s) 209, 530, 563
NciI CCSGG 3 cut(s) 178, 179, 950
NdeII GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
NlaIII CATG 4 cut(s) 173, 683, 896, 1106
NmuCI GTSAC 1 cut(s) 1032
NspI RCATGY 2 cut(s) 173, 896
PciI ACATGT 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 303
PctI GAATGC 1 cut(s) 1383
PfeI GAWTC 2 cut(s) 818, 1136
PflFI GACNNNGTC 1 cut(s) 104
PfoI TCCNGGA 2 cut(s) 736, 948
PkrI GCNGC 9 cut(s) 343, 400, 612, 810, 865, 931, 1189, 1450, 1491
PleI GAGTC 2 cut(s) 634, 693
PpsI GAGTC 2 cut(s) 634, 693
PscI ACATGT 1 cut(s) 892
Psp6I CCWGG 1 cut(s) 736
PspEI GGTNACC 1 cut(s) 385
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 736
PsrI GAACNNNNNNTAC 2 cut(s) 107, 139
PstI CTGCAG 2 cut(s) 403, 855
PsuI RGATCY 1 cut(s) 1174
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 3 cut(s) 557, 1448, 1492
RsaI GTAC 3 cut(s) 553, 839, 916
RsaNI GTAC 3 cut(s) 552, 838, 915
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 8 cut(s) 230, 306, 417, 540, 723, 798, 1091, 1206
SatI GCNGC 9 cut(s) 342, 399, 611, 809, 864, 930, 1188, 1449, 1490
Sau3AI GATC 7 cut(s) 283, 370, 374, 547, 619, 1174, 1456
SchI GAGTC 2 cut(s) 635, 693
ScrFI CCNGG 4 cut(s) 178, 179, 738, 950
SduI GDGCHC 1 cut(s) 1499
SfaNI GCATC 5 cut(s) 190, 283, 368, 478, 1428
SfcI CTRYAG 2 cut(s) 399, 851
SmaI CCCGGG 1 cut(s) 179
SmlI CTYRAG 3 cut(s) 449, 516, 923
SmoI CTYRAG 3 cut(s) 449, 516, 923
Sse9I AATT 5 cut(s) 75, 1092, 1117, 1202, 1295
SsiI CCGC 2 cut(s) 808, 1369
SspMI CTAG 1 cut(s) 1311
StyD4I CCNGG 4 cut(s) 176, 177, 736, 948
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 2 cut(s) 1027, 1075
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 5 cut(s) 108, 334, 373, 504, 629
TasI AATT 5 cut(s) 75, 1092, 1117, 1202, 1295
TatI WGTACW 2 cut(s) 837, 914
TauI GCSGC 1 cut(s) 811
TfiI GAWTC 2 cut(s) 818, 1136
Tru1I TTAA 8 cut(s) 230, 306, 417, 540, 723, 798, 1091, 1206
Tru9I TTAA 8 cut(s) 230, 306, 417, 540, 723, 798, 1091, 1206
TscAI CASTG 3 cut(s) 397, 531, 831
TseFI GTSAC 1 cut(s) 1032
TseI GCWGC 8 cut(s) 341, 398, 610, 863, 929, 1187, 1448, 1489
Tsp45I GTSAC 1 cut(s) 1032
TspDTI ATGAA 7 cut(s) 234, 794, 831, 1128, 1185, 1287, 1466
TspGWI ACGGA 2 cut(s) 1297, 1505
TspMI CCCGGG 1 cut(s) 177
TspRI CASTG 3 cut(s) 397, 531, 831
Tth111I GACNNNGTC 1 cut(s) 104
XapI RAATTY 1 cut(s) 1202
XceI RCATGY 2 cut(s) 173, 896
XmaI CCCGGG 1 cut(s) 177
XspI CTAG 1 cut(s) 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.