Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010460

Physical Location & Seq

Genomic Coordinates Reverse (-)

20793446 .. 20795019

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTTGATCGTTCAGGACTTCTTTGTCCAGCTTTACAATATTATACTTGAATATAGGCCTGGAAGAGATCAGGGCGAAGTATTAGCTGAAGCTTTGAAGATGATGCTGTGTGATGATAGACAACATGACATGCAGAAGGCTGCTGCATTTGTAAAGCGTTTGGCTACATTCTCATTATCTTTGGTTACTTTAAAACATCTTCTTCTGAAGAACGTCAAGTGCCGGAATCTGTTAGAAAATGATGCTGGAGGTGGCTCAGTGTCCGGTTCCGTCGCAAAATATCACCCAGATGCTTCAGACCCCAACTTAAGTGGCGCTCTTGCTTCAGTTCTTTGGGAACTCAATCTTCTCGCCCAGCATTATCATCCAGCTATCTCCAATATGGCTTCCAGTATATCAACCATGAACACTGCTCATAACCAGGTTTATCTCTCTACCATTTCTCCTCAACAAGCTTTCATGGATTATTCCTTGGAGAGGCAGGAGTCTTTCAACCCACCAAATGACATCAAAAAATCAACTAACAAGAGAAAAAGAGGAAGTGGGTCTTCATTATTAGCTGGGATAGAACCGTCTGCAGATACAAGTCCAATTGATGAAGATGATGTGAGACAGAAACTGTCTGCTCATTTTACGCTTCTTCGTGACATTAAGGAGAATCAGAGTTTGAGGGCTAAGCTAGATAGTACCACATCATCCATACAGTTATATGAAGAGTATAAGCAGCAGAAGAAGGCTAAAAAGCCGAAAACCAAGATAAGGAAAACTTCGTTAACTGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBF NOC3p

Protein Analysis

262

Amino Acids

29.2

Weight (kDa)

9.25

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79150
fragaria_vesca	FvH4_3g15370 FvH4_3g15370
malus_domestica	MD05G1223600.v1.1 MD10G1205100.v1.1
prunus_persica	Prupe.4G136600_v2.0.a1 Prupe.4G136600_v2.0.a1 Prupe.4G136600_v2.0.a1
pyrus_communis	pycom05g20650 pycom10g17550
rosa_chinensis	RchiOBHm_Chr5g0025821
rosa_laevigata	RLG00000032879
rosa_multiflora	Rmu_sc0000968.1_g000010
rosa_roxburghii	Rroxscaffold_1G00053380 Rroxscaffold_1G00054360
rosa_rugosa	Rorug05G0088700
rosa_samantha	Rh5AG180800 Rh5BG179400 Rh5CG197200 Rh5DG179100
rosa_wichuraiana	Rw5G016400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	23
AcuI	CTGAAG	4 cut(s)	108, 227, 279, 309
AfaI	GTAC	1 cut(s)	688
AfiI	CCNNNNNNNGG	2 cut(s)	477, 759
AflII	CTTAAG	1 cut(s)	307
AgsI	TTSAA	3 cut(s)	50, 97, 493
AjnI	CCWGG	2 cut(s)	58, 420
AluBI	AGCT	7 cut(s)	31, 86, 92, 371, 455, 560, 679
AluI	AGCT	7 cut(s)	31, 86, 92, 371, 455, 560, 679
Alw26I	GTCTC	1 cut(s)	604
AlwNI	CAGNNNCTG	1 cut(s)	619
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	140, 143, 724
AspLEI	GCGC	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	127, 130, 736
BciT130I	CCWGG	2 cut(s)	60, 422
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	318
BfrI	CTTAAG	1 cut(s)	307
BisI	GCNGC	3 cut(s)	141, 144, 725
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	3 cut(s)	142, 145, 726
Bme1390I	CCNGG	2 cut(s)	60, 422
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	60, 422
BmsI	GCATC	3 cut(s)	93, 232, 280
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	267
Bpu1102I	GCTNAGC	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 759
Bse1I	ACTGG	1 cut(s)	390
BseBI	CCWGG	2 cut(s)	60, 422
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	364, 695
BseLI	CCNNNNNNNGG	2 cut(s)	477, 759
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	3 cut(s)	127, 130, 736
BseYI	CCCAGC	2 cut(s)	354, 560
BshFI	GGCC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	223, 264
BslI	CCNNNNNNNGG	2 cut(s)	477, 759
BsmAI	GTCTC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	6, 67
Bsp1720I	GCTNAGC	1 cut(s)	675
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	580
BspTI	CTTAAG	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	2 cut(s)	6, 67
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	60, 422
Bst4CI	ACNGT	4 cut(s)	573, 621, 705, 778
Bst6I	CTCTTC	2 cut(s)	58, 708
BstAFI	CTTAAG	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	256, 675
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	364, 695
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	2 cut(s)	9, 70
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	2 cut(s)	6, 67
BstNI	CCWGG	2 cut(s)	60, 422
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	58, 420
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	3 cut(s)	127, 130, 736
BstV2I	GAAGAC	1 cut(s)	540
BsuRI	GGCC	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	364, 695
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	2 cut(s)	264, 408
CaiI	CAGNNNCTG	1 cut(s)	619
CfoI	GCGC	1 cut(s)	317
CsiI	ACCWGGT	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	687
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	125, 130, 403, 460
CviQI	GTAC	1 cut(s)	687
DdeI	CTNAG	2 cut(s)	256, 675
DpnI	GATC	2 cut(s)	8, 69
DpnII	GATC	2 cut(s)	6, 67
DraI	TTTAAA	1 cut(s)	192
DrdI	GACNNNNNNGTC	1 cut(s)	23
DseDI	GACNNNNNNGTC	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	58, 708
EarI	CTCTTC	2 cut(s)	58, 708
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	58
Eco57I	CTGAAG	4 cut(s)	108, 227, 279, 309
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	58, 420
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	4 cut(s)	128, 133, 406, 463
FalI	AAGNNNNNCTT	4 cut(s)	532, 564, 751, 783
FatI	CATG	4 cut(s)	124, 129, 402, 459
Fnu4HI	GCNGC	3 cut(s)	141, 144, 725
FokI	GGATG	2 cut(s)	351, 682
Fsp4HI	GCNGC	3 cut(s)	141, 144, 725
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	3 cut(s)	141, 144, 725
GsaI	CCCAGC	2 cut(s)	358, 564
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	2 cut(s)	223, 264
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	128, 133, 406, 463
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	1 cut(s)	774
HindII	GTYRAC	1 cut(s)	774
HindIII	AAGCTT	2 cut(s)	90, 453
HinfI	GANTC	3 cut(s)	226, 485, 658
HpaI	GTTAAC	1 cut(s)	774
HpaII	CCGG	2 cut(s)	223, 264
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	3 cut(s)	207, 298, 663
Hpy188III	TCNNGA	2 cut(s)	14, 644
Hpy8I	GTNNAC	1 cut(s)	774
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	130, 727
HpyCH4III	ACNGT	4 cut(s)	573, 621, 705, 778
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	3 cut(s)	133, 146, 578
HpyF3I	CTNAG	2 cut(s)	256, 675
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	128, 133, 406, 463
HspAI	GCGC	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	774
Kzo9I	GATC	2 cut(s)	6, 67
Lsp1109I	GCAGC	3 cut(s)	127, 130, 736
LweI	GCATC	3 cut(s)	93, 232, 280
MabI	ACCWGGT	1 cut(s)	420
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	184, 644
MalI	GATC	2 cut(s)	8, 69
MboI	GATC	2 cut(s)	6, 67
MfeI	CAATTG	1 cut(s)	591
MluCI	AATT	1 cut(s)	591
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	5 cut(s)	242, 456, 471, 530, 663
MseI	TTAA	4 cut(s)	191, 308, 651, 773
MslI	CAYNNNNRTG	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	2 cut(s)	223, 264
MspR9I	CCNGG	2 cut(s)	60, 422
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	2 cut(s)	60, 422
NdeII	GATC	2 cut(s)	6, 67
NlaIII	CATG	4 cut(s)	128, 133, 406, 463
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	226, 658
PkrI	GCNGC	3 cut(s)	142, 145, 726
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
Psp6I	CCWGG	2 cut(s)	58, 420
PspFI	CCCAGC	2 cut(s)	354, 560
PspGI	CCWGG	2 cut(s)	58, 420
PspN4I	GGNNCC	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	619
RsaI	GTAC	1 cut(s)	688
RsaNI	GTAC	1 cut(s)	687
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	191, 308, 651, 773
SatI	GCNGC	3 cut(s)	141, 144, 725
Sau3AI	GATC	2 cut(s)	6, 67
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	60, 422
SexAI	ACCWGGT	1 cut(s)	420
SfaNI	GCATC	3 cut(s)	93, 232, 280
SfcI	CTRYAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	1 cut(s)	591
SseBI	AGGCCT	1 cut(s)	58
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	680
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	58, 420
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	4 cut(s)	573, 621, 705, 778
TaiI	ACGT	1 cut(s)	216
TasI	AATT	1 cut(s)	591
TfiI	GAWTC	2 cut(s)	226, 658
Tru1I	TTAA	4 cut(s)	191, 308, 651, 773
Tru9I	TTAA	4 cut(s)	191, 308, 651, 773
TscAI	CASTG	2 cut(s)	264, 415
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	3 cut(s)	140, 143, 724
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	419, 448, 540, 612, 726
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	2 cut(s)	264, 415
Vha464I	CTTAAG	1 cut(s)	307
XagI	CCTNNNNNAGG	1 cut(s)	475
XceI	RCATGY	1 cut(s)	133
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.