Rh5CG197200

Nucleolar complex protein 3 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010460
Physical Location & Seq
Forward (+)
19645197 .. 19654150
8954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG197200.1

Sequence Viewer

Length: 1848 bp
ATGAGGGGAAAGAAGAAGATTATCCTACCTCCTCAGCTCCCGCCGGACATCGCCGAAGACGAAATCGAGGTCTCCGACGAGGACAAGGCCTTCGTCAACGAGAACAAGGACTACGCCGGCTTCCTCTCCACATTGGACACCAACTCTATCACCAAGCATGTTACTCGTGTTGCTGATGTAAAGGAGGATACTTTGGAAGCTTTATACGAACAGCGAAGAAGGAAGACCTCGCAGAAAGAAAAAGAGGATATCGGGATTGAAGTTGATCCTGTTGATGCTCTTCCCATAAAAGACTTCTCTGGAAATCTTCACTATCTAAAAGTACCAAAGAAATTGAAAGCATCTGAAAATGATCTGGAGGAAACTGGTCAGGATGATGAGGATGATGCTGCAGATAAAGGCATACTTAAGTTGACAAAGGCTGAAAGGAGGGCAAAGCTTAAGAAACTCAAGAAAGAGGCAAAAAAACAAGGAAAAGATTCTGCTACACCCGAAGTGGAAGTTGAAGATGAAGTCAAACCAACCCCACAAGCAGCAGTGCTGGCTGAGGTTAAAGAAGATCTTACTGCTGAAGAAGGCTTTGAAAGTAAGAAGCACAAACTTGCAGAGTTGGGAATTGCTCTACTTGCTGATCCCGAGGCCAATATTAAATCCCTGAAGGACATGTTACAAATCTGTAAAGATAGGGATCATGCAATCATCAAACTTGGACTCCTATCTTTGTTGGCTGTCTTTAAAGACCTTATTCCTGGATACCGCATTAGGCTTCCCACAGAGAAGGAGCTGGAGATGAAGGTTTCAAAGGATGTTAAGAAAATGCGGCTTTATGAATCAACACTTCTGAACACATACAAGGCATACTTGCAGAGGTTGGCAGCCTTAGAAAAACAGCCCTCATTTCAGCATGTGGCATTTCGCTGTATCTGTACTTTACTCGATGCAGTACCCTATTTCAACTTCCGGGAGAGCTTGTTAGAGATTGTTATAAAAAACATAAGCTCCTCAGATGATGTTGTAAGGAAACTATGTTGTTCTACTGTAAAGTCACTTTTCACGAATGAGGGAAAACACGGTGGTGAAGCTACTGTGGAGGCTGTTCGATCAATCGCAAATTATGTGAAAGCTCGTAATTGTCAACTGCACCCTGATTCCATTGAGGTTTTCTTGTCTCTGTCATTCTATGAGGATCTTGGGAGGGCTGCAAAAGAAGATGATAAAAATAAAGCCAAAAACAAAAGAGGTAAAAAAAGAAAGGATCATGAGGATCCACGCCAAATGAAAGAAAATGACAAAAAAAGGAGTAGGCAAGAACAACTGATCAAGACAAGGGAGGAGGTTGCTGCTGATTACAAGGCGGTTGCTTATACCCCAGATGTTCTGGAGCGGAGAAGAATGCAGACAGAGACACTTTCAGCTGTATTTGAAACATATTTTCGCATATTGAAGCATACAATGCAGTCATCAGCTGCCAGATCTGAAGCAAATATTAGTTTATCGACTGGGGCATCTGAGCCCTACCCTTTACTTGCTCCCTGTTTGCAAGGATTAGGAAAGTTCTCACACCTAATTGACCTAGATTTCATGAGTGATCTGATAAACTCTCTGAGAAAGCTTGCTTCTGGTGGTGGTGATACTGATAAGACTTCTGAGAGATGTTCAAAATGTTTGACTGTATCTGAGCGTCTCCGATGCTGCATTGTCGCATTTAAAGTGATGAAGAGCAATCTTGATGCCTTGAATGTTGATCTACAGGACTTCTTCGTCCAGCTTTACAATATTATACTTGAATATAGGCCTGGAAGGTTTGTTCTAAACTTATTAATCCCAAAGTTTGCTTTGGTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBF NOC3p

Protein Analysis

615

Amino Acids

69.61

Weight (kDa)

8.08

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOC3p PF07540 197 - 287 1.3e-29 Nucleolar complex-associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AasI GACNNNNNNGTC 1 cut(s) 1760
AccBSI CCGCTC 1 cut(s) 1384
AciI CCGC 5 cut(s) 41, 757, 820, 1355, 1384
AclWI GGATC 7 cut(s) 260, 626, 696, 1194, 1259, 1263, 1272
AcuI CTGAAG 3 cut(s) 591, 677, 1497
AfaI GTAC 3 cut(s) 324, 928, 945
AflII CTTAAG 2 cut(s) 407, 440
AflIII ACRYGT 1 cut(s) 663
AjnI CCWGG 2 cut(s) 748, 1795
AleI CACNNNNGTG 1 cut(s) 1074
AloI GAACNNNNNNTCC 2 cut(s) 1791, 1823
Alw26I GTCTC 4 cut(s) 76, 1173, 1397, 1688
AlwI GGATC 7 cut(s) 260, 626, 696, 1194, 1259, 1263, 1272
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 87, 639, 1793
ApeKI GCWGC 7 cut(s) 389, 533, 875, 1199, 1340, 1466, 1692
ArsI GACNNNNNNTTYG 4 cut(s) 54, 74, 86, 106
AseI ATTAAT 1 cut(s) 1820
Asp700I GAANNNNTTC 1 cut(s) 478
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 3 cut(s) 142, 1088, 1640
AvaI CYCGRG 1 cut(s) 635
BamHI GGATCC 1 cut(s) 1264
BanII GRGCYC 1 cut(s) 1515
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 63, 230
BbvCI CCTCAGC 2 cut(s) 33, 546
BbvI GCAGC 7 cut(s) 376, 545, 887, 1186, 1327, 1453, 1679
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 2 cut(s) 750, 1797
BciVI GTATCC 2 cut(s) 181, 746
BclI TGATCA 1 cut(s) 1317
BcnI CCSGG 1 cut(s) 962
BcoDI GTCTC 4 cut(s) 76, 1173, 1397, 1688
BfaI CTAG 1 cut(s) 1574
BfmI CTRYAG 2 cut(s) 390, 1748
BfrI CTTAAG 2 cut(s) 407, 440
BfuI GTATCC 2 cut(s) 181, 746
BglII AGATCT 2 cut(s) 559, 1472
BisI GCNGC 8 cut(s) 390, 534, 821, 876, 1200, 1341, 1467, 1693
BlsI GCNGC 8 cut(s) 391, 535, 822, 877, 1201, 1342, 1468, 1694
Bme1390I CCNGG 3 cut(s) 750, 962, 1797
BmeT110I CYCGRG 1 cut(s) 635
BmiI GGNNCC 1 cut(s) 1266
BmrFI CCNGG 3 cut(s) 750, 962, 1797
BmrI ACTGGG 1 cut(s) 1509
BmsI GCATC 7 cut(s) 265, 350, 376, 928, 1514, 1679, 1720
BmuI ACTGGG 1 cut(s) 1509
BpiI GAAGAC 2 cut(s) 63, 230
BpmI CTGGAG 3 cut(s) 377, 806, 1400
Bpu10I CCTNAGC 2 cut(s) 33, 546
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 636
BsaXI ACNNNNNCTCC 6 cut(s) 696, 726, 956, 983, 986, 1013
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 370, 1504
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 2 cut(s) 750, 1797
BseDI CCNNGG 1 cut(s) 636
BseGI GGATG 3 cut(s) 379, 388, 811
BseJI GATNNNNATC 1 cut(s) 687
BseMII CTCAG 7 cut(s) 47, 537, 1017, 1500, 1595, 1638, 1668
BseNI ACTGG 2 cut(s) 370, 1504
BseRI GAGGAG 3 cut(s) 21, 991, 1346
BseXI GCAGC 7 cut(s) 376, 545, 887, 1186, 1327, 1453, 1679
BsgI GTGCAG 1 cut(s) 1124
BshFI GGCC 3 cut(s) 89, 641, 1795
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 3 cut(s) 44, 117, 961
BsmAI GTCTC 4 cut(s) 76, 1173, 1397, 1688
BsmBI CGTCTC 1 cut(s) 1688
BsmI GAATGC 1 cut(s) 1398
BsnI GGCC 3 cut(s) 89, 641, 1795
Bso31I GGTCTC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 1515
BspACI CCGC 5 cut(s) 41, 757, 820, 1355, 1384
BspANI GGCC 3 cut(s) 89, 641, 1795
BspCNI CTCAG 7 cut(s) 46, 538, 1016, 1501, 1596, 1639, 1669
BspHI TCATGA 2 cut(s) 1258, 1581
BspLI GGNNCC 1 cut(s) 1266
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 7 cut(s) 260, 626, 696, 1194, 1259, 1263, 1272
BspQI GCTCTTC 2 cut(s) 285, 1712
BspTI CTTAAG 2 cut(s) 407, 440
BspTNI GGTCTC 1 cut(s) 76
BsrBI CCGCTC 1 cut(s) 1384
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 2 cut(s) 370, 1504
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 1 cut(s) 636
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 750, 1797
Bst4CI ACNGT 4 cut(s) 1039, 1073, 1087, 1672
Bst6I CTCTTC 2 cut(s) 285, 1712
BstAFI CTTAAG 2 cut(s) 407, 440
BstAPI GCANNNNNTGC 1 cut(s) 1453
BstC8I GCNNGC 3 cut(s) 118, 543, 1614
BstDEI CTNAG 8 cut(s) 33, 546, 880, 1003, 1509, 1604, 1647, 1677
BstF5I GGATG 3 cut(s) 379, 388, 811
BstMAI GTCTC 4 cut(s) 76, 1173, 1397, 1688
BstMWI GCNNNNNNNGC 3 cut(s) 542, 626, 1453
BstNI CCWGG 2 cut(s) 750, 1797
BstNSI RCATGY 3 cut(s) 161, 667, 908
BstSCI CCNGG 3 cut(s) 748, 960, 1795
BstSFI CTRYAG 2 cut(s) 390, 1748
BstV1I GCAGC 7 cut(s) 376, 545, 887, 1186, 1327, 1453, 1679
BstV2I GAAGAC 2 cut(s) 63, 230
BstX2I RGATCY 4 cut(s) 559, 1186, 1264, 1472
BstYI RGATCY 4 cut(s) 559, 1186, 1264, 1472
BsuI GTATCC 2 cut(s) 181, 746
BsuRI GGCC 3 cut(s) 89, 641, 1795
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 379, 388, 811
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 3 cut(s) 118, 543, 1614
CciI TCATGA 2 cut(s) 1258, 1581
Cfr10I RCCGGY 1 cut(s) 116
CseI GACGC 1 cut(s) 1670
Csp6I GTAC 3 cut(s) 323, 927, 944
CviAII CATG 7 cut(s) 158, 664, 692, 905, 1259, 1582, 1845
CviQI GTAC 3 cut(s) 323, 927, 944
DdeI CTNAG 8 cut(s) 33, 546, 880, 1003, 1509, 1604, 1647, 1677
DraI TTTAAA 2 cut(s) 736, 1708
DrdI GACNNNNNNGTC 1 cut(s) 1760
DseDI GACNNNNNNGTC 1 cut(s) 1760
Eam1104I CTCTTC 2 cut(s) 285, 1712
EarI CTCTTC 2 cut(s) 285, 1712
Eco147I AGGCCT 2 cut(s) 89, 1795
Eco24I GRGCYC 1 cut(s) 1515
Eco31I GGTCTC 1 cut(s) 76
Eco32I GATATC 1 cut(s) 250
Eco57I CTGAAG 3 cut(s) 591, 677, 1497
Eco88I CYCGRG 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 748, 1795
EcoRV GATATC 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 1515
Esp3I CGTCTC 1 cut(s) 1688
FaeI CATG 7 cut(s) 161, 667, 695, 908, 1262, 1585, 1848
FalI AAGNNNNNCTT 6 cut(s) 390, 422, 546, 578, 845, 877
FatI CATG 7 cut(s) 157, 663, 691, 904, 1258, 1581, 1844
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 1317
Fnu4HI GCNGC 8 cut(s) 390, 534, 821, 876, 1200, 1341, 1467, 1693
FokI GGATG 3 cut(s) 386, 395, 818
FriOI GRGCYC 1 cut(s) 1515
Fsp4HI GCNGC 8 cut(s) 390, 534, 821, 876, 1200, 1341, 1467, 1693
FspBI CTAG 1 cut(s) 1574
GluI GCNGC 8 cut(s) 390, 534, 821, 876, 1200, 1341, 1467, 1693
GsuI CTGGAG 3 cut(s) 377, 806, 1400
HaeIII GGCC 3 cut(s) 89, 641, 1795
HapII CCGG 3 cut(s) 44, 117, 961
HgaI GACGC 1 cut(s) 1670
Hin1II CATG 7 cut(s) 161, 667, 695, 908, 1262, 1585, 1848
HincII GTYRAC 3 cut(s) 97, 414, 1136
HindII GTYRAC 3 cut(s) 97, 414, 1136
HindIII AAGCTT 3 cut(s) 198, 437, 1610
HinfI GANTC 4 cut(s) 479, 711, 830, 1148
HpaII CCGG 3 cut(s) 44, 117, 961
HphI GGTGA 3 cut(s) 142, 1088, 1640
Hpy166II GTNNAC 3 cut(s) 97, 414, 1136
Hpy8I GTNNAC 3 cut(s) 97, 414, 1136
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 7 cut(s) 100, 213, 569, 652, 772, 787, 1794
HpyCH4III ACNGT 4 cut(s) 1039, 1073, 1087, 1672
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 626, 1453
HpyF3I CTNAG 8 cut(s) 33, 546, 880, 1003, 1509, 1604, 1647, 1677
Hsp92II CATG 7 cut(s) 161, 667, 695, 908, 1262, 1585, 1848
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 1317
LguI GCTCTTC 2 cut(s) 285, 1712
LmnI GCTCC 5 cut(s) 42, 781, 1004, 1381, 1534
Lsp1109I GCAGC 7 cut(s) 376, 545, 887, 1186, 1327, 1453, 1679
LweI GCATC 7 cut(s) 265, 350, 376, 928, 1514, 1679, 1720
MaeI CTAG 1 cut(s) 1574
MaeIII GTNAC 4 cut(s) 160, 666, 1044, 1840
MbiI CCGCTC 1 cut(s) 1384
MflI RGATCY 4 cut(s) 559, 1186, 1264, 1472
MhlI GDGCHC 1 cut(s) 1515
MluCI AATT 5 cut(s) 332, 615, 1111, 1129, 1566
MlyI GAGTC 1 cut(s) 705
MmeI TCCRAC 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 478
MseI TTAA 8 cut(s) 408, 441, 552, 648, 735, 810, 1707, 1820
MslI CAYNNNNRTG 1 cut(s) 1074
MspA1I CMGCKG 2 cut(s) 1415, 1466
MspCI CTTAAG 2 cut(s) 407, 440
MspI CCGG 3 cut(s) 44, 117, 961
MspR9I CCNGG 3 cut(s) 750, 962, 1797
Mva1269I GAATGC 1 cut(s) 1398
MvaI CCWGG 2 cut(s) 750, 1797
MwoI GCNNNNNNNGC 3 cut(s) 542, 626, 1453
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 962
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 7 cut(s) 161, 667, 695, 908, 1262, 1585, 1848
NlaIV GGNNCC 1 cut(s) 1266
NmuCI GTSAC 1 cut(s) 1044
NspI RCATGY 3 cut(s) 161, 667, 908
OliI CACNNNNGTG 1 cut(s) 1074
PagI TCATGA 2 cut(s) 1258, 1581
PceI AGGCCT 2 cut(s) 89, 1795
PciI ACATGT 1 cut(s) 663
PciSI GCTCTTC 2 cut(s) 285, 1712
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 72
PctI GAATGC 1 cut(s) 1398
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 3 cut(s) 479, 830, 1148
PfoI TCCNGGA 2 cut(s) 748, 960
PkrI GCNGC 8 cut(s) 391, 535, 822, 877, 1201, 1342, 1468, 1694
PleI GAGTC 1 cut(s) 705
PpsI GAGTC 1 cut(s) 705
PscI ACATGT 1 cut(s) 663
PshBI ATTAAT 1 cut(s) 1820
PsiI TTATAA 1 cut(s) 986
Psp6I CCWGG 2 cut(s) 748, 1795
PspGI CCWGG 2 cut(s) 748, 1795
PspN4I GGNNCC 1 cut(s) 1266
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 4 cut(s) 559, 1186, 1264, 1472
PvuII CAGCTG 2 cut(s) 1415, 1466
RsaI GTAC 3 cut(s) 324, 928, 945
RsaNI GTAC 3 cut(s) 323, 927, 944
RseI CAYNNNNRTG 1 cut(s) 1074
SapI GCTCTTC 2 cut(s) 285, 1712
SaqAI TTAA 8 cut(s) 408, 441, 552, 648, 735, 810, 1707, 1820
SatI GCNGC 8 cut(s) 390, 534, 821, 876, 1200, 1341, 1467, 1693
SchI GAGTC 1 cut(s) 705
ScrFI CCNGG 3 cut(s) 750, 962, 1797
SduI GDGCHC 1 cut(s) 1515
SfaNI GCATC 7 cut(s) 265, 350, 376, 928, 1514, 1679, 1720
SfcI CTRYAG 2 cut(s) 390, 1748
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 3 cut(s) 407, 440, 449
SmoI CTYRAG 3 cut(s) 407, 440, 449
Sse9I AATT 5 cut(s) 332, 615, 1111, 1129, 1566
SseBI AGGCCT 2 cut(s) 89, 1795
SsiI CCGC 5 cut(s) 41, 757, 820, 1355, 1384
SspI AATATT 3 cut(s) 646, 1486, 1777
SspMI CTAG 1 cut(s) 1574
StuI AGGCCT 2 cut(s) 89, 1795
StyD4I CCNGG 3 cut(s) 748, 960, 1795
TaaI ACNGT 4 cut(s) 1039, 1073, 1087, 1672
TaqI TCGA 4 cut(s) 66, 936, 1099, 1496
TasI AATT 5 cut(s) 332, 615, 1111, 1129, 1566
TatI WGTACW 1 cut(s) 926
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 3 cut(s) 479, 830, 1148
Tru1I TTAA 8 cut(s) 408, 441, 552, 648, 735, 810, 1707, 1820
Tru9I TTAA 8 cut(s) 408, 441, 552, 648, 735, 810, 1707, 1820
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 1044
TseI GCWGC 7 cut(s) 389, 533, 875, 1199, 1340, 1466, 1692
Tsp45I GTSAC 1 cut(s) 1044
TspDTI ATGAA 6 cut(s) 525, 806, 843, 1292, 1570, 1730
TspRI CASTG 1 cut(s) 543
Vha464I CTTAAG 2 cut(s) 407, 440
VspI ATTAAT 1 cut(s) 1820
XceI RCATGY 3 cut(s) 161, 667, 908
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 1 cut(s) 1574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.