Rh5AG180800

Nucleolar complex protein 3 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
20426019 .. 20434941
8923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG180800.1

Sequence Viewer

Length: 2076 bp
ATGAGGGGAAAGAAGAAGATAATCCTACCTCCTCAGCTCCCGCCGGACATCGCCGAAGACGAAATCGAAGTCTCCGACGAGGACAAGGCCTTCGTCAACGAGAACAAGGACTACGCCGGCTTCCTCTCCACATTGGACACCAACTCTATCACCAAGCATGTTACTCGTGTTGCTGATGTAAAGGAGGATACTTTGGAAGCTTTATACGAACAACGAAGAAGGAAGACCTCGCAGAAAGAAAAAGAGGATATCGGGATTGAAGTTGATCCTGTTGATGCTCTTCCCATAAAAGACTTCTCTGGAAATCTCCACTATCTAAAAGTACCAAAGAAATTGAAAGCATCTGAAAATGATCTGGAGGAAACTGGTCAGGATGATGAGGATGATGCTGCAGATAAAGGCATAGTTAAGTTGACAAAGGCTGAAAGGAGGGCAAAGCTTAAGAAACTCAAGAAAGAGGCAAAAAAACAAGGAAAAGATTCTGCTACACCCGAAGTGGAAGTTGAAGTTGAAGTCAAACCAACCCCACAAGCAGCAGTGCTGGCTGAGGTTAAAGAAGATCTTACTGCTGAAGAAGGCTTTGAAAGTAAGAAGCACAAACTTGCAGAGTTGGGAATTGCTCTACTTGCTGATCCCGAGGCCAATATTAAATCCCTGAAGGACATGTTACAAATCTGTAAAGATAGGGATCATGCAATCATCAAACTTGGACTCCTATCTTTGTTGGCTGTCTTTAAAGACCTTATTCCTGGATACCGCATTAGGCTTCCCACAGAGAAGGAGCTGGAGATGAAGGTTTCAAAGGATGTTAAGAAAATGCGTCTTTATGAATCAACACTTCTGAACACATACAAGGCATACTTGCAGAGGTTGGCAGCCTTAGAAAAACAGCCCTCATTTCAGCATGTGGCATTTCGCTGTATCTGTACTTTACTCGATGCAGTACCCTATTTCAACTTCCGGGAGAGCTTGTTAGAGATTGTTATAAAAAACATAAGCTCCTCAGATGATGTTGTAAGGAAACTATGTTGTTCTACTGTAAAGTCACTTTTCACGAATGAGGGAAAACACGGTGGTGAAGCTACTGTGGAGGCTGTTCGATCAATCGCAAATTATGTGAAAGCTCGTAATTGTCAACTGCACCCTGATTCCATTGAGGTTTTCTTGTCTCTGTCATTCTATGAGGATCTTGGGAGGGCTGCAAAAGAAGATGATAAAAATAAAGCCAAAAACAAAAGAGGTAAAAAAAGAAAGGATCATGAGGATCCACGCCAAATGAAAGAAAATGACAAAAAAAGGAGTAGGCAAGAACAACTGATCAAGACAAGGGAGGAGGTTGCTGCTGATTACAAGGCGGTTGCTTATACCCCAGATGTTCTGGAGCGGAGAAGAATGCAGACAGAGACACTTTCAGCTGTATTTGAAACATATTTTCGCATATTGAAGCACACAATGCAGTCATCAGCTGCGAGATCTGAAGCAAATATTTGTTTATCGACTGGGGCATCTGCGCCCTACCCTTTACTTGCTCCCTGTCTGCAAGGATTAGGAAAGTTCTCACACCTAATTGACCTAGATTTCATGAGTGATCTGATAAACTCTCTGAGAAAGCTTGCTTCTGGTGGTGGTGATACTGACAAGACTTCTGAGAGATGTTCAAAATGTTTGACTGTATCTGAGCGTCTCCGATGCTGCATTGTCGCATTTAAAGTGATGAAGAGCAATCTTGATGCCTTGAATGTTGATCTACAGGACTTCTTCGTCCAGCTTTACAATATTATACTTGAATATAGGCCTGGAAGAGATCAGGGTGAAGTATTAGCTGAAGCTCTCAAAATAATGCTGTGTGAAGATAGACAACATGACATGCAGAAGGCTGCTGCATTTGTAAAGCGTCTAGCCACATTTTCATTATGTTTTGGGTCTGCAGAGTCCATGGCTGCCTTGGTTACCTTAAAGCATCTTCTTCTGAAGAATGTTAAGTGCCGAAACCTGTTAGAAAATGATGCTGGAGGTGGCTCAGTGTCCGGTTTAATTGCGGTAAAGCTCTCTTGCTACTCTTGTGTGCACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

691

Amino Acids

77.63

Weight (kDa)

8.24

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOC3p PF07540 197 - 287 1.6e-29 Nucleolar complex-associated protein
CBF PF03914 562 - 670 1.3e-12 CBF/Mak21 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 986
AasI GACNNNNNNGTC 1 cut(s) 1760
AccBSI CCGCTC 1 cut(s) 1384
AciI CCGC 5 cut(s) 41, 757, 1355, 1384, 2039
AclWI GGATC 7 cut(s) 260, 626, 696, 1194, 1259, 1263, 1272
AcuI CTGAAG 5 cut(s) 591, 677, 1497, 1845, 1991
AfaI GTAC 3 cut(s) 324, 928, 945
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 663
AjnI CCWGG 2 cut(s) 748, 1795
AleI CACNNNNGTG 1 cut(s) 1074
Alw21I GWGCWC 1 cut(s) 2070
Alw26I GTCTC 4 cut(s) 76, 1173, 1397, 1688
Alw44I GTGCAC 1 cut(s) 2066
AlwI GGATC 7 cut(s) 260, 626, 696, 1194, 1259, 1263, 1272
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 87, 639, 1793
ApaLI GTGCAC 1 cut(s) 2066
ArsI GACNNNNNNTTYG 4 cut(s) 54, 74, 86, 106
Asp700I GAANNNNTTC 1 cut(s) 478
AspLEI GCGC 1 cut(s) 1513
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 4 cut(s) 142, 1088, 1640, 1823
AvaI CYCGRG 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 2070
BamHI GGATCC 1 cut(s) 1264
BauI CACGAG 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 63, 230
Bbv12I GWGCWC 1 cut(s) 2070
BbvCI CCTCAGC 2 cut(s) 33, 546
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BciT130I CCWGG 2 cut(s) 750, 1797
BciVI GTATCC 2 cut(s) 181, 746
BclI TGATCA 1 cut(s) 1317
BcnI CCSGG 1 cut(s) 962
BcoDI GTCTC 4 cut(s) 76, 1173, 1397, 1688
BfaI CTAG 2 cut(s) 1574, 1898
BfmI CTRYAG 3 cut(s) 390, 1748, 1926
BfrI CTTAAG 1 cut(s) 440
BfuI GTATCC 2 cut(s) 181, 746
BglII AGATCT 2 cut(s) 559, 1472
Bme1390I CCNGG 3 cut(s) 750, 962, 1797
BmeT110I CYCGRG 1 cut(s) 635
BmiI GGNNCC 1 cut(s) 1266
BmrFI CCNGG 3 cut(s) 750, 962, 1797
BmrI ACTGGG 1 cut(s) 1509
BmsI GCATC 9 cut(s) 265, 350, 376, 928, 1514, 1679, 1720, 1969, 1996
BmuI ACTGGG 1 cut(s) 1509
BpiI GAAGAC 2 cut(s) 63, 230
BpmI CTGGAG 4 cut(s) 377, 806, 1400, 2031
Bpu10I CCTNAGC 2 cut(s) 33, 546
BpuEI CTTGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 687
BsaJI CCNNGG 3 cut(s) 636, 1935, 1944
BsaWI WCCGGW 1 cut(s) 2027
BsaXI ACNNNNNCTCC 6 cut(s) 696, 726, 956, 983, 986, 1013
Bse118I RCCGGY 1 cut(s) 116
Bse1I ACTGG 2 cut(s) 370, 1504
Bse8I GATNNNNATC 1 cut(s) 687
BseBI CCWGG 2 cut(s) 750, 1797
BseDI CCNNGG 3 cut(s) 636, 1935, 1944
BseGI GGATG 3 cut(s) 379, 388, 811
BseJI GATNNNNATC 1 cut(s) 687
BseMII CTCAG 7 cut(s) 47, 537, 1017, 1595, 1638, 1668, 2034
BseNI ACTGG 2 cut(s) 370, 1504
BseRI GAGGAG 3 cut(s) 21, 991, 1346
BseSI GKGCMC 1 cut(s) 2070
BsgI GTGCAG 1 cut(s) 1124
BshFI GGCC 3 cut(s) 89, 641, 1795
BsiHKAI GWGCWC 1 cut(s) 2070
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 4 cut(s) 44, 117, 961, 2028
BsmAI GTCTC 4 cut(s) 76, 1173, 1397, 1688
BsmBI CGTCTC 1 cut(s) 1688
BsmI GAATGC 1 cut(s) 1398
BsnI GGCC 3 cut(s) 89, 641, 1795
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 2070
Bsp19I CCATGG 1 cut(s) 1935
BspACI CCGC 5 cut(s) 41, 757, 1355, 1384, 2039
BspANI GGCC 3 cut(s) 89, 641, 1795
BspCNI CTCAG 7 cut(s) 46, 538, 1016, 1596, 1639, 1669, 2033
BspHI TCATGA 2 cut(s) 1258, 1581
BspLI GGNNCC 1 cut(s) 1266
BspMAI CTGCAG 2 cut(s) 394, 1930
BspPI GGATC 7 cut(s) 260, 626, 696, 1194, 1259, 1263, 1272
BspQI GCTCTTC 2 cut(s) 285, 1712
BspTI CTTAAG 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 1384
BsrFI RCCGGY 1 cut(s) 116
BsrI ACTGG 2 cut(s) 370, 1504
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 636, 1935, 1944
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 1935, 1944
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 2 cut(s) 750, 1797
Bst4CI ACNGT 4 cut(s) 1039, 1073, 1087, 1672
Bst6I CTCTTC 3 cut(s) 285, 1712, 1795
BstAFI CTTAAG 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 1453
BstC8I GCNNGC 3 cut(s) 118, 543, 1614
BstDEI CTNAG 8 cut(s) 33, 546, 880, 1003, 1604, 1647, 1677, 2020
BstDSI CCRYGG 1 cut(s) 1935
BstEII GGTNACC 1 cut(s) 1948
BstF5I GGATG 3 cut(s) 379, 388, 811
BstHHI GCGC 1 cut(s) 1513
BstMAI GTCTC 4 cut(s) 76, 1173, 1397, 1688
BstMWI GCNNNNNNNGC 3 cut(s) 542, 626, 1453
BstNI CCWGG 2 cut(s) 750, 1797
BstNSI RCATGY 4 cut(s) 161, 667, 908, 1870
BstPI GGTNACC 1 cut(s) 1948
BstSCI CCNGG 3 cut(s) 748, 960, 1795
BstSFI CTRYAG 3 cut(s) 390, 1748, 1926
BstSLI GKGCMC 1 cut(s) 2070
BstV2I GAAGAC 2 cut(s) 63, 230
BstX2I RGATCY 4 cut(s) 559, 1186, 1264, 1472
BstYI RGATCY 4 cut(s) 559, 1186, 1264, 1472
BsuI GTATCC 2 cut(s) 181, 746
BsuRI GGCC 3 cut(s) 89, 641, 1795
BtgI CCRYGG 1 cut(s) 1935
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 379, 388, 811
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 2 cut(s) 543, 2028
Cac8I GCNNGC 3 cut(s) 118, 543, 1614
CciI TCATGA 2 cut(s) 1258, 1581
CfoI GCGC 1 cut(s) 1513
Cfr10I RCCGGY 1 cut(s) 116
CseI GACGC 3 cut(s) 809, 1670, 1883
Csp6I GTAC 3 cut(s) 323, 927, 944
CviAII CATG 9 cut(s) 158, 664, 692, 905, 1259, 1582, 1862, 1867, 1936
CviQI GTAC 3 cut(s) 323, 927, 944
DdeI CTNAG 8 cut(s) 33, 546, 880, 1003, 1604, 1647, 1677, 2020
DraI TTTAAA 2 cut(s) 736, 1708
DrdI GACNNNNNNGTC 1 cut(s) 1760
DseDI GACNNNNNNGTC 1 cut(s) 1760
Eam1104I CTCTTC 3 cut(s) 285, 1712, 1795
EarI CTCTTC 3 cut(s) 285, 1712, 1795
Eco130I CCWWGG 2 cut(s) 1935, 1944
Eco147I AGGCCT 2 cut(s) 89, 1795
Eco32I GATATC 1 cut(s) 250
Eco57I CTGAAG 5 cut(s) 591, 677, 1497, 1845, 1991
Eco88I CYCGRG 1 cut(s) 635
Eco91I GGTNACC 1 cut(s) 1948
EcoO65I GGTNACC 1 cut(s) 1948
EcoRII CCWGG 2 cut(s) 748, 1795
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 1935, 1944
ErhI CCWWGG 2 cut(s) 1935, 1944
Esp3I CGTCTC 1 cut(s) 1688
FaeI CATG 9 cut(s) 161, 667, 695, 908, 1262, 1585, 1865, 1870, 1939
FalI AAGNNNNNCTT 4 cut(s) 546, 578, 845, 877
FatI CATG 9 cut(s) 157, 663, 691, 904, 1258, 1581, 1861, 1866, 1935
FauI CCCGC 1 cut(s) 48
FbaI TGATCA 1 cut(s) 1317
FokI GGATG 3 cut(s) 386, 395, 818
FspBI CTAG 2 cut(s) 1574, 1898
GlaI GCGC 1 cut(s) 1512
GsuI CTGGAG 4 cut(s) 377, 806, 1400, 2031
HaeIII GGCC 3 cut(s) 89, 641, 1795
HapII CCGG 4 cut(s) 44, 117, 961, 2028
HgaI GACGC 3 cut(s) 809, 1670, 1883
HhaI GCGC 1 cut(s) 1513
Hin1II CATG 9 cut(s) 161, 667, 695, 908, 1262, 1585, 1865, 1870, 1939
Hin6I GCGC 1 cut(s) 1511
HinP1I GCGC 1 cut(s) 1511
HincII GTYRAC 3 cut(s) 97, 414, 1136
HindII GTYRAC 3 cut(s) 97, 414, 1136
HindIII AAGCTT 3 cut(s) 198, 437, 1610
HinfI GANTC 5 cut(s) 479, 711, 830, 1148, 1931
HpaII CCGG 4 cut(s) 44, 117, 961, 2028
HphI GGTGA 4 cut(s) 142, 1088, 1640, 1823
Hpy166II GTNNAC 4 cut(s) 97, 414, 1136, 2068
Hpy8I GTNNAC 4 cut(s) 97, 414, 1136, 2068
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 7 cut(s) 100, 213, 569, 652, 772, 787, 1867
HpyCH4III ACNGT 4 cut(s) 1039, 1073, 1087, 1672
HpyF10VI GCNNNNNNNGC 3 cut(s) 542, 626, 1453
HpyF3I CTNAG 8 cut(s) 33, 546, 880, 1003, 1604, 1647, 1677, 2020
Hsp92II CATG 9 cut(s) 161, 667, 695, 908, 1262, 1585, 1865, 1870, 1939
HspAI GCGC 1 cut(s) 1511
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 1317
LguI GCTCTTC 2 cut(s) 285, 1712
LmnI GCTCC 5 cut(s) 42, 781, 1004, 1381, 1534
LweI GCATC 9 cut(s) 265, 350, 376, 928, 1514, 1679, 1720, 1969, 1996
MaeI CTAG 2 cut(s) 1574, 1898
MaeIII GTNAC 4 cut(s) 160, 666, 1044, 1948
MbiI CCGCTC 1 cut(s) 1384
MflI RGATCY 4 cut(s) 559, 1186, 1264, 1472
MhlI GDGCHC 1 cut(s) 2070
MluCI AATT 6 cut(s) 332, 615, 1111, 1129, 1566, 2034
MlyI GAGTC 2 cut(s) 705, 1940
MmeI TCCRAC 1 cut(s) 99
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 478
MslI CAYNNNNRTG 1 cut(s) 1074
MspA1I CMGCKG 2 cut(s) 1415, 1466
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 4 cut(s) 44, 117, 961, 2028
MspR9I CCNGG 3 cut(s) 750, 962, 1797
Mva1269I GAATGC 1 cut(s) 1398
MvaI CCWGG 2 cut(s) 750, 1797
MwoI GCNNNNNNNGC 3 cut(s) 542, 626, 1453
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 962
NcoI CCATGG 1 cut(s) 1935
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 9 cut(s) 161, 667, 695, 908, 1262, 1585, 1865, 1870, 1939
NlaIV GGNNCC 1 cut(s) 1266
NmuCI GTSAC 1 cut(s) 1044
NspI RCATGY 4 cut(s) 161, 667, 908, 1870
OliI CACNNNNGTG 1 cut(s) 1074
PagI TCATGA 2 cut(s) 1258, 1581
PceI AGGCCT 2 cut(s) 89, 1795
PciI ACATGT 1 cut(s) 663
PciSI GCTCTTC 2 cut(s) 285, 1712
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 72
PctI GAATGC 1 cut(s) 1398
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 478
PfeI GAWTC 3 cut(s) 479, 830, 1148
PfoI TCCNGGA 2 cut(s) 748, 960
PleI GAGTC 2 cut(s) 705, 1939
PpsI GAGTC 2 cut(s) 705, 1939
PscI ACATGT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 986
Psp6I CCWGG 2 cut(s) 748, 1795
PspEI GGTNACC 1 cut(s) 1948
PspGI CCWGG 2 cut(s) 748, 1795
PspN4I GGNNCC 1 cut(s) 1266
PsrI GAACNNNNNNTAC 2 cut(s) 95, 127
PstI CTGCAG 2 cut(s) 394, 1930
PsuI RGATCY 4 cut(s) 559, 1186, 1264, 1472
PvuII CAGCTG 2 cut(s) 1415, 1466
RsaI GTAC 3 cut(s) 324, 928, 945
RsaNI GTAC 3 cut(s) 323, 927, 944
RseI CAYNNNNRTG 1 cut(s) 1074
SapI GCTCTTC 2 cut(s) 285, 1712
SchI GAGTC 2 cut(s) 705, 1940
ScrFI CCNGG 3 cut(s) 750, 962, 1797
SduI GDGCHC 1 cut(s) 2070
SfaNI GCATC 9 cut(s) 265, 350, 376, 928, 1514, 1679, 1720, 1969, 1996
SfcI CTRYAG 3 cut(s) 390, 1748, 1926
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 2 cut(s) 440, 449
SmoI CTYRAG 2 cut(s) 440, 449
Sse9I AATT 6 cut(s) 332, 615, 1111, 1129, 1566, 2034
SseBI AGGCCT 2 cut(s) 89, 1795
SsiI CCGC 5 cut(s) 41, 757, 1355, 1384, 2039
SspI AATATT 3 cut(s) 646, 1486, 1777
SspMI CTAG 2 cut(s) 1574, 1898
StuI AGGCCT 2 cut(s) 89, 1795
StyD4I CCNGG 3 cut(s) 748, 960, 1795
StyI CCWWGG 2 cut(s) 1935, 1944
TaaI ACNGT 4 cut(s) 1039, 1073, 1087, 1672
TaqI TCGA 4 cut(s) 66, 936, 1099, 1496
TasI AATT 6 cut(s) 332, 615, 1111, 1129, 1566, 2034
TatI WGTACW 1 cut(s) 926
TfiI GAWTC 3 cut(s) 479, 830, 1148
TscAI CASTG 2 cut(s) 543, 2028
TseFI GTSAC 1 cut(s) 1044
Tsp45I GTSAC 1 cut(s) 1044
TspDTI ATGAA 6 cut(s) 806, 843, 1292, 1570, 1730, 1899
TspRI CASTG 2 cut(s) 543, 2028
Vha464I CTTAAG 1 cut(s) 440
VneI GTGCAC 1 cut(s) 2066
XceI RCATGY 4 cut(s) 161, 667, 908, 1870
XcmI CCANNNNNNNNNTGG 1 cut(s) 1942
XmnI GAANNNNTTC 1 cut(s) 478
XspI CTAG 2 cut(s) 1574, 1898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.