pycom05g23090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0020409
Physical Location & Seq
Forward (+)
25127249 .. 25128721
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23090.3

Sequence Viewer

Length: 1047 bp
ATGTTAACACGAAAATTAACGTTAAACTTTAAGGTGTCAAACTGTATAGATTTAAGTAGATTTTATTGGGACAAGAACTCACAAGTAGAAGTGTATAAGAACCTATCTACTTTTACTAATCAGTATGTCCACCTCATCCACATACGAACACTCAATGACCATGAGATGATCGATCTTGGATCATCTTTTGTGACGGATGCTCCTATTGCACTTATCGAGAATTCAAATGTTATCTACGTCATTAGACTGATCCTTAGAGTAGTTCTTACTTTAAAAAAATGCGCCAACACCGACTTCACCCCTAACAAAAAAATAACCTACAACCGCCCTGCATTTCTCTCTCCTTCTCTCTCCCCTTTCGGATTTGGAGGAGCTCTGCACCAAGAACCCGAAATCAACCTCAGCCCCGAGGAGCTCTGCACCAAGAACCCAGAATCAACCTCCCCATTCAGATTTGGAAAAGCTTTGCACCAAGAACCCGGAATCTCCCTCCACCCCAGAATCAACCTCAGCCCCGAGGAGCCTTGCACTAAGAACCCGGAATCAACCTCAGCCTTGAGGAGCTCTGCACCAAGATCTCTCTGCGATATGGCCCGGCATGTGGGTCTGTCGATTTTAGGCCGATCTCTTACCTGGCTTGGGCTGGGTGCCGGTCAAAATGCTGGGCTGGAGTGGATAGCCTGGGTGTCGGGCTATTTTTTGGCTGGGTGCTGGCCCATCAGTTCCCCCGATGGAATTGCTCTTAGTAACTTCAAAACACATGCGTATTTAACAAAATTTAATAATTTTATTACAAGTGATGTTATAGATCGGTTACTAGTGTTGTCAATGCCAGCTTTTATAGGTTTAAAGAGTTGTCAAGAAAGTGTTCAAGTAATTTTGCCACGTTGTCGTTTTGCGAGTTCCGTATCTTTATATCTCGTCATCGTCTTCCGTACTTATCGCGGAATTGCGTACCGTCCTAACGCTTTTGCTGTCTTCCCTTTAGCTTCGCGCGTCAGGAGCCCTAAATTTCCCAAGTTTCATCAAATTTCAGGCTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

38.93

Weight (kDa)

9.4

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020409)

Species Orthologous Gene IDs
prunus_persica Prupe.8G160000_v2.0.a1
pyrus_communis pycom01g09770 pycom05g23090 pycom06g14550 pycom10g17560
rosa_chinensis RchiOBHm_Chr6g0245561

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 647
AccII CGCG 3 cut(s) 945, 994, 996
AciI CCGC 2 cut(s) 325, 945
AclI AACGTT 1 cut(s) 20
AclWI GGATC 2 cut(s) 187, 244
AcsI RAATTY 4 cut(s) 220, 776, 1010, 1029
AfaI GTAC 2 cut(s) 937, 956
AfiI CCNNNNNNNGG 2 cut(s) 601, 639
AgsI TTSAA 3 cut(s) 225, 754, 872
AhlI ACTAGT 1 cut(s) 817
AjnI CCWGG 2 cut(s) 632, 680
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 6 cut(s) 374, 415, 464, 564, 836, 989
AluI AGCT 6 cut(s) 374, 415, 464, 564, 836, 989
Alw21I GWGCWC 3 cut(s) 376, 417, 566
AlwI GGATC 2 cut(s) 187, 244
Ama87I CYCGRG 2 cut(s) 407, 515
AoxI GGCC 3 cut(s) 591, 619, 713
ApoI RAATTY 4 cut(s) 220, 776, 1010, 1029
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 2 cut(s) 284, 996
AspS9I GGNCC 2 cut(s) 592, 714
AsuC2I CCSGG 3 cut(s) 480, 539, 595
AsuHPI GGTGA 1 cut(s) 289
AvaI CYCGRG 2 cut(s) 407, 515
BanI GGYRCC 1 cut(s) 647
BanII GRGCYC 4 cut(s) 376, 417, 566, 1007
BbsI GAAGAC 2 cut(s) 922, 970
Bbv12I GWGCWC 3 cut(s) 376, 417, 566
BbvCI CCTCAGC 3 cut(s) 401, 509, 550
BccI CCATC 2 cut(s) 725, 725
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 2 cut(s) 634, 682
BcnI CCSGG 3 cut(s) 480, 539, 595
BcuI ACTAGT 1 cut(s) 817
BfaI CTAG 1 cut(s) 818
BglII AGATCT 1 cut(s) 575
Bme1390I CCNGG 5 cut(s) 480, 539, 595, 634, 682
BmeT110I CYCGRG 2 cut(s) 407, 515
BmgT120I GGNCC 2 cut(s) 592, 714
BmiI GGNNCC 4 cut(s) 522, 649, 1004, 1039
BmrFI CCNGG 5 cut(s) 480, 539, 595, 634, 682
BmsI GCATC 1 cut(s) 187
BpiI GAAGAC 2 cut(s) 922, 970
BpmI CTGGAG 1 cut(s) 689
Bpu10I CCTNAGC 3 cut(s) 401, 509, 550
BpuEI CTTGAG 1 cut(s) 577
BpuMI CCSGG 3 cut(s) 480, 539, 595
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 408, 516, 681
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 639
Bse118I RCCGGY 1 cut(s) 650
BseBI CCWGG 2 cut(s) 634, 682
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 408, 516, 681
BseGI GGATG 2 cut(s) 135, 202
BseLI CCNNNNNNNGG 2 cut(s) 601, 639
BseMII CTCAG 3 cut(s) 415, 523, 564
BseRI GAGGAG 4 cut(s) 384, 425, 533, 574
BseYI CCCAGC 3 cut(s) 643, 662, 704
BsgI GTGCAG 3 cut(s) 362, 403, 552
Bsh1236I CGCG 3 cut(s) 945, 994, 996
BshFI GGCC 3 cut(s) 593, 621, 715
BshNI GGYRCC 1 cut(s) 647
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 3 cut(s) 376, 417, 566
BsiHKCI CYCGRG 2 cut(s) 407, 515
BsiSI CCGG 4 cut(s) 480, 539, 595, 651
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 601, 639
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 3 cut(s) 593, 621, 715
BsoBI CYCGRG 2 cut(s) 407, 515
Bsp1286I GDGCHC 4 cut(s) 376, 417, 566, 1007
Bsp143I GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
BspACI CCGC 2 cut(s) 325, 945
BspANI GGCC 3 cut(s) 593, 621, 715
BspCNI CTCAG 3 cut(s) 414, 522, 563
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 3 cut(s) 945, 994, 996
BspLI GGNNCC 4 cut(s) 522, 649, 1004, 1039
BspPI GGATC 2 cut(s) 187, 244
BspT107I GGYRCC 1 cut(s) 647
BsrFI RCCGGY 1 cut(s) 650
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 3 cut(s) 408, 516, 681
BssMI GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
Bst2UI CCWGG 2 cut(s) 634, 682
Bst4CI ACNGT 2 cut(s) 44, 959
BstC8I GCNNGC 2 cut(s) 713, 834
BstDEI CTNAG 6 cut(s) 254, 401, 509, 531, 550, 743
BstF5I GGATG 2 cut(s) 135, 202
BstFNI CGCG 3 cut(s) 945, 994, 996
BstHHI GCGC 2 cut(s) 284, 996
BstKTI GATC 7 cut(s) 171, 175, 182, 252, 578, 626, 811
BstMBI GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
BstMWI GCNNNNNNNGC 2 cut(s) 206, 1002
BstNI CCWGG 2 cut(s) 634, 682
BstNSI RCATGY 2 cut(s) 602, 764
BstSCI CCNGG 5 cut(s) 478, 537, 593, 632, 680
BstUI CGCG 3 cut(s) 945, 994, 996
BstV2I GAAGAC 2 cut(s) 922, 970
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 3 cut(s) 593, 621, 715
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 2 cut(s) 135, 202
Cac8I GCNNGC 2 cut(s) 713, 834
CfoI GCGC 2 cut(s) 284, 996
Cfr10I RCCGGY 1 cut(s) 650
Cfr13I GGNCC 2 cut(s) 592, 714
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 985
Csp6I GTAC 2 cut(s) 936, 955
CviAII CATG 3 cut(s) 161, 599, 761
CviQI GTAC 2 cut(s) 936, 955
DdeI CTNAG 6 cut(s) 254, 401, 509, 531, 550, 743
DpnI GATC 7 cut(s) 170, 174, 181, 251, 577, 625, 810
DpnII GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
DraI TTTAAA 2 cut(s) 273, 849
Ecl136II GAGCTC 3 cut(s) 374, 415, 564
Eco24I GRGCYC 4 cut(s) 376, 417, 566, 1007
Eco53kI GAGCTC 3 cut(s) 374, 415, 564
Eco88I CYCGRG 2 cut(s) 407, 515
EcoICRI GAGCTC 3 cut(s) 374, 415, 564
EcoRI GAATTC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 632, 680
EcoT38I GRGCYC 4 cut(s) 376, 417, 566, 1007
FaeI CATG 3 cut(s) 164, 602, 764
FaqI GGGAC 1 cut(s) 83
FatI CATG 3 cut(s) 160, 598, 760
FokI GGATG 2 cut(s) 122, 209
FriOI GRGCYC 4 cut(s) 376, 417, 566, 1007
FspBI CTAG 1 cut(s) 818
GlaI GCGC 2 cut(s) 283, 995
GsaI CCCAGC 3 cut(s) 647, 666, 708
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 3 cut(s) 593, 621, 715
HapII CCGG 4 cut(s) 480, 539, 595, 651
HgaI GACGC 1 cut(s) 985
HhaI GCGC 2 cut(s) 284, 996
Hin1II CATG 3 cut(s) 164, 602, 764
Hin6I GCGC 2 cut(s) 282, 994
HinP1I GCGC 2 cut(s) 282, 994
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 4 cut(s) 434, 483, 501, 542
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 4 cut(s) 480, 539, 595, 651
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 6, 130
Hpy188I TCNGA 2 cut(s) 362, 452
Hpy188III TCNNGA 3 cut(s) 217, 860, 1000
Hpy8I GTNNAC 2 cut(s) 6, 130
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 44, 959
HpyCH4IV ACGT 3 cut(s) 20, 237, 886
HpyCH4V TGCA 7 cut(s) 209, 332, 379, 420, 469, 528, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 1002
HpyF3I CTNAG 6 cut(s) 254, 401, 509, 531, 550, 743
HpySE526I ACGT 3 cut(s) 20, 237, 886
Hsp92II CATG 3 cut(s) 164, 602, 764
HspAI GCGC 2 cut(s) 282, 994
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
LmnI GCTCC 7 cut(s) 205, 371, 412, 520, 561, 1002, 1043
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 818
MaeII ACGT 3 cut(s) 20, 237, 886
MaeIII GTNAC 3 cut(s) 190, 746, 813
MalI GATC 7 cut(s) 170, 174, 181, 251, 577, 625, 810
MboI GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
MboII GAAGA 2 cut(s) 922, 970
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 4 cut(s) 376, 417, 566, 1007
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 9 cut(s) 5, 17, 23, 30, 53, 272, 770, 780, 848
MspI CCGG 4 cut(s) 480, 539, 595, 651
MspR9I CCNGG 5 cut(s) 480, 539, 595, 634, 682
MunI CAATTG 1 cut(s) 1042
MvaI CCWGG 2 cut(s) 634, 682
MvnI CGCG 3 cut(s) 945, 994, 996
MwoI GCNNNNNNNGC 2 cut(s) 206, 1002
NciI CCSGG 3 cut(s) 480, 539, 595
NdeII GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
NlaIII CATG 3 cut(s) 164, 602, 764
NlaIV GGNNCC 4 cut(s) 522, 649, 1004, 1039
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 2 cut(s) 602, 764
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 4 cut(s) 434, 483, 501, 542
Psp124BI GAGCTC 3 cut(s) 376, 417, 566
Psp1406I AACGTT 1 cut(s) 20
Psp6I CCWGG 2 cut(s) 632, 680
PspFI CCCAGC 3 cut(s) 643, 662, 704
PspGI CCWGG 2 cut(s) 632, 680
PspN4I GGNNCC 4 cut(s) 522, 649, 1004, 1039
PspPI GGNCC 2 cut(s) 592, 714
PsuI RGATCY 1 cut(s) 575
RsaI GTAC 2 cut(s) 937, 956
RsaNI GTAC 2 cut(s) 936, 955
SacI GAGCTC 3 cut(s) 376, 417, 566
SaqAI TTAA 9 cut(s) 5, 17, 23, 30, 53, 272, 770, 780, 848
Sau3AI GATC 7 cut(s) 168, 172, 179, 249, 575, 623, 808
Sau96I GGNCC 2 cut(s) 592, 714
ScrFI CCNGG 5 cut(s) 480, 539, 595, 634, 682
SduI GDGCHC 4 cut(s) 376, 417, 566, 1007
SfaNI GCATC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
SpeI ACTAGT 1 cut(s) 817
SsiI CCGC 2 cut(s) 325, 945
SspMI CTAG 1 cut(s) 818
SstI GAGCTC 3 cut(s) 376, 417, 566
StyD4I CCNGG 5 cut(s) 478, 537, 593, 632, 680
TaaI ACNGT 2 cut(s) 44, 959
TaiI ACGT 3 cut(s) 23, 240, 889
TaqI TCGA 3 cut(s) 171, 216, 611
TfiI GAWTC 4 cut(s) 434, 483, 501, 542
Tru1I TTAA 9 cut(s) 5, 17, 23, 30, 53, 272, 770, 780, 848
Tru9I TTAA 9 cut(s) 5, 17, 23, 30, 53, 272, 770, 780, 848
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 1 cut(s) 1013
TspGWI ACGGA 3 cut(s) 209, 895, 923
XapI RAATTY 4 cut(s) 220, 776, 1010, 1029
XceI RCATGY 2 cut(s) 602, 764
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.