pycom06g14550

Belongs to the helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0020409
Physical Location & Seq
Forward (+)
19265818 .. 19266198
381 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g14550.1

Sequence Viewer

Length: 381 bp
ATGAGGGATTTGAGATGGGGTGTAGATGAAGAAGGCATACGGGTGTATCAGATGGGGTTCCAGGGATCGGGAGGCGTCGGAGGTGCGACGGAGAGTGATGGAGGTGGAGATTGCGGTGAGGGTGCAGGTGAAGATTGCAGAAAAAAAAAAAAAAAGGCCCACGACATCACGCTAGCGTCAGCATGGCGTCATACGGGTTGGCTCACGCCTCTGTCGATTTTGGGCTGGCCTGGAGACCAGCTTGGACTGGGTGCCGATCAAAATGCTGGGCTGGAGTGGTTTCACTGGGTGCCGGGTTGGTTTTTTGGCTGGGTGCTGGCCTTTCCCACCCCCGGTGGAACTGCTCTTAGTTTGCAGCCAGCGTGGGTCCTAGGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helitron_like_N PIF1

Protein Analysis

127

Amino Acids

13.53

Weight (kDa)

5.2

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020409)

Species Orthologous Gene IDs
prunus_persica Prupe.8G160000_v2.0.a1
pyrus_communis pycom01g09770 pycom05g23090 pycom06g14550 pycom10g17560
rosa_chinensis RchiOBHm_Chr6g0245561

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 251, 289
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 73
AcyI GRCGYC 2 cut(s) 75, 187
AdeI CACNNNGTG 1 cut(s) 289
AfiI CCNNNNNNNGG 2 cut(s) 67, 332
AjnI CCWGG 2 cut(s) 60, 229
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 73
AoxI GGCC 4 cut(s) 156, 227, 318, 373
ApeKI GCWGC 1 cut(s) 355
AspA2I CCTAGG 1 cut(s) 370
AspS9I GGNCC 2 cut(s) 157, 367
AsuC2I CCSGG 2 cut(s) 294, 333
AsuHPI GGTGA 2 cut(s) 128, 140
AsuNHI GCTAGC 1 cut(s) 172
AvaII GGWCC 1 cut(s) 367
AvrII CCTAGG 1 cut(s) 370
BaeI ACNNNNGTAYC 2 cut(s) 29, 62
BanI GGYRCC 2 cut(s) 251, 289
BarI GAAGNNNNNNTAC 2 cut(s) 21, 53
BbvI GCAGC 1 cut(s) 367
BccI CCATC 3 cut(s) 9, 46, 92
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 2 cut(s) 62, 231
BcnI CCSGG 2 cut(s) 294, 333
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 2 cut(s) 173, 371
BfuAI ACCTGC 1 cut(s) 116
BisI GCNGC 1 cut(s) 356
BlnI CCTAGG 1 cut(s) 370
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 4 cut(s) 62, 231, 294, 333
Bme18I GGWCC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 157, 367
BmiI GGNNCC 4 cut(s) 59, 253, 291, 368
BmrFI CCNGG 4 cut(s) 62, 231, 294, 333
BmrI ACTGGG 2 cut(s) 257, 295
BmtI GCTAGC 1 cut(s) 176
BmuI ACTGGG 2 cut(s) 257, 295
BpmI CTGGAG 2 cut(s) 252, 293
BpuMI CCSGG 2 cut(s) 294, 333
BsaHI GRCGYC 2 cut(s) 75, 187
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 61, 331, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 332
Bse1I ACTGG 3 cut(s) 252, 290, 376
BseBI CCWGG 2 cut(s) 62, 231
BseDI CCNNGG 3 cut(s) 61, 331, 370
BseLI CCNNNNNNNGG 2 cut(s) 67, 332
BseNI ACTGG 3 cut(s) 252, 290, 376
BseXI GCAGC 1 cut(s) 367
BseYI CCCAGC 2 cut(s) 266, 309
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 4 cut(s) 158, 229, 320, 375
BshNI GGYRCC 2 cut(s) 251, 289
BsiSI CCGG 2 cut(s) 293, 333
BslI CCNNNNNNNGG 2 cut(s) 67, 332
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 4 cut(s) 158, 229, 320, 375
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 2 cut(s) 65, 256
BspACI CCGC 1 cut(s) 114
BspANI GGCC 4 cut(s) 158, 229, 320, 375
BspLI GGNNCC 4 cut(s) 59, 253, 291, 368
BspMI ACCTGC 1 cut(s) 116
BspOI GCTAGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 251, 289
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 3 cut(s) 252, 290, 376
BssECI CCNNGG 3 cut(s) 61, 331, 370
BssMI GATC 2 cut(s) 65, 256
BssNI GRCGYC 2 cut(s) 75, 187
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 2 cut(s) 62, 231
BstACI GRCGYC 2 cut(s) 75, 187
BstC8I GCNNGC 4 cut(s) 174, 227, 318, 360
BstDEI CTNAG 1 cut(s) 347
BstKTI GATC 2 cut(s) 68, 259
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 65, 256
BstNI CCWGG 2 cut(s) 62, 231
BstSCI CCNGG 4 cut(s) 60, 229, 292, 331
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 4 cut(s) 158, 229, 320, 375
BtsIMutI CAGTG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 116
Cac8I GCNNGC 4 cut(s) 174, 227, 318, 360
Cfr13I GGNCC 2 cut(s) 157, 367
CseI GACGC 3 cut(s) 64, 165, 176
CviAII CATG 1 cut(s) 183
DdeI CTNAG 1 cut(s) 347
DpnI GATC 2 cut(s) 67, 258
DpnII GATC 2 cut(s) 65, 256
DraIII CACNNNGTG 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 367
EcoO109I RGGNCCY 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 60, 229
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 1 cut(s) 186
FaiI YATR 3 cut(s) 38, 184, 192
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 356
FspBI CTAG 2 cut(s) 173, 371
GluI GCNGC 1 cut(s) 356
GsaI CCCAGC 2 cut(s) 270, 313
GsuI CTGGAG 2 cut(s) 252, 293
HaeIII GGCC 4 cut(s) 158, 229, 320, 375
HapII CCGG 2 cut(s) 293, 333
HgaI GACGC 3 cut(s) 64, 165, 176
Hin1I GRCGYC 2 cut(s) 75, 187
Hin1II CATG 1 cut(s) 186
HpaII CCGG 2 cut(s) 293, 333
HphI GGTGA 2 cut(s) 128, 140
Hpy188I TCNGA 2 cut(s) 51, 80
Hpy188III TCNNGA 1 cut(s) 69
Hpy99I CGWCG 2 cut(s) 80, 91
HpyAV CCTTC 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 125, 138, 355
HpyF3I CTNAG 1 cut(s) 347
Hsp92I GRCGYC 2 cut(s) 75, 187
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 2 cut(s) 65, 256
Lsp1109I GCAGC 1 cut(s) 367
MaeI CTAG 2 cut(s) 173, 371
MalI GATC 2 cut(s) 67, 258
MboI GATC 2 cut(s) 65, 256
MboII GAAGA 2 cut(s) 41, 143
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 65, 74, 95, 112, 219
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 2 cut(s) 293, 333
MspR9I CCNGG 4 cut(s) 62, 231, 294, 333
MvaI CCWGG 2 cut(s) 62, 231
NciI CCSGG 2 cut(s) 294, 333
NdeII GATC 2 cut(s) 65, 256
NheI GCTAGC 1 cut(s) 172
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 4 cut(s) 59, 253, 291, 368
PaqCI CACCTGC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 212
PkrI GCNGC 1 cut(s) 357
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 60, 229
PspFI CCCAGC 2 cut(s) 266, 309
PspGI CCWGG 2 cut(s) 60, 229
PspN4I GGNNCC 4 cut(s) 59, 253, 291, 368
PspPI GGNCC 2 cut(s) 157, 367
PspPPI RGGWCCY 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 41
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 65, 256
Sau96I GGNCC 2 cut(s) 157, 367
ScrFI CCNGG 4 cut(s) 62, 231, 294, 333
SetI ASST 4 cut(s) 85, 106, 130, 243
SinI GGWCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 41
SsiI CCGC 1 cut(s) 114
SspMI CTAG 2 cut(s) 173, 371
StyD4I CCNGG 4 cut(s) 60, 229, 292, 331
StyI CCWWGG 1 cut(s) 370
TaqI TCGA 1 cut(s) 215
TscAI CASTG 1 cut(s) 290
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 104
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 367
XmaJI CCTAGG 1 cut(s) 370
XspI CTAG 2 cut(s) 173, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.