RchiOBHm_Chr6g0245561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
1355216 .. 1356245
1030 bp
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UTR
Exon/CDS
Intron
PRQ22007

Sequence Viewer

Length: 201 bp
ATGGGTCATCATTGTTATAGAACAGAAGCCCCTTCTTCATACCCAGTTCTGGTCTTCTTGGCAGTGACTGTTGTACTTCTTCTCTTGTCAACTTTGATCTCGTCTTTTGAGGTCGAAGCCCCCAAATTTGAGATCAATTTTGGTCTCATAGCCGCACCATTGCTGTTGCTTGCCGTCGTTCATTCGTTGTCATCAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.16

Weight (kDa)

5.76

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020409)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 68
ApoI RAATTY 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 46
BceAI ACGGC 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 149
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 149
Bsp143I GATC 2 cut(s) 96, 132
BspACI CCGC 1 cut(s) 153
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 1 cut(s) 44
BssMI GATC 2 cut(s) 96, 132
Bst4CI ACNGT 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 99, 135
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 96, 132
BstV2I GAAGAC 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 68
Csp6I GTAC 1 cut(s) 74
CviJI RGCY 3 cut(s) 29, 119, 152
CviKI_1 RGCY 3 cut(s) 29, 119, 152
CviQI GTAC 1 cut(s) 74
DpnI GATC 2 cut(s) 98, 134
DpnII GATC 2 cut(s) 96, 132
Eco31I GGTCTC 1 cut(s) 149
FaiI YATR 3 cut(s) 18, 40, 149
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 70
Kzo9I GATC 2 cut(s) 96, 132
LpnPI CCDG 2 cut(s) 35, 57
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 98, 134
MboI GATC 2 cut(s) 96, 132
MboII GAAGA 3 cut(s) 27, 46, 71
MluCI AATT 2 cut(s) 125, 136
MnlI CCTC 1 cut(s) 103
NdeII GATC 2 cut(s) 96, 132
NmuCI GTSAC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 96, 132
SetI ASST 1 cut(s) 114
SgeI CNNG 6 cut(s) 56, 62, 70, 97, 112, 182
Sse9I AATT 2 cut(s) 125, 136
SsiI CCGC 1 cut(s) 153
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 114
TasI AATT 2 cut(s) 125, 136
TatI WGTACW 1 cut(s) 73
TauI GCSGC 1 cut(s) 155
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 27, 170
TspRI CASTG 1 cut(s) 69
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.