pycom05g23990

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0018512
Physical Location & Seq
Reverse (-)
25598025 .. 25598357
333 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 333 bp
ATGGTGAAGGTCAAGGAAAAGGATGCCAAGTCAGAGGTAAGCGAATTGTTGTTGAGGAGGAAGGTGATCCACACAGCCAACAAGGCGGCTCAAAAATACAAGCGCGACGTTGATTATTGCTTCTTGCACAACTGTGTTTTTGATATTTTTGCCCAAAGCCTCAAGTTTGATATTGAAAAATTTCATCATCACAAGGACCATGACCATGACCATCATGATGATTATTGCTTGGAGATTACCCAAGCAGTTACCTTTTTGCCTACCATCGCTGATCATCATATGTTGTTTGAAAACATTGCGAGGAAGGTTTTCCGGTCAGAATCATGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

111

Amino Acids

13.08

Weight (kDa)

6.82

Isoelectric Point (pI)

54.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 9 - 107 1.2e-08 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 179
AgsI TTSAA 2 cut(s) 176, 290
AleI CACNNNNGTG 1 cut(s) 132
AlwI GGATC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 2 cut(s) 180, 308
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 16, 76
AvaII GGWCC 1 cut(s) 196
BccI CCATC 2 cut(s) 219, 272
BclI TGATCA 1 cut(s) 271
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmsI GCATC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 294
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 313
Bsp143I GATC 2 cut(s) 66, 271
BspACI CCGC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 105
BspHI TCATGA 1 cut(s) 214
BspPI GGATC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 294
BssMI GATC 2 cut(s) 66, 271
Bst4CI ACNGT 1 cut(s) 134
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 69, 274
BstMBI GATC 2 cut(s) 66, 271
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstUI CGCG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 28
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 4 cut(s) 200, 206, 215, 324
CviJI RGCY 3 cut(s) 77, 89, 159
CviKI_1 RGCY 3 cut(s) 77, 89, 159
DpnI GATC 2 cut(s) 68, 273
DpnII GATC 2 cut(s) 66, 271
Eco47I GGWCC 1 cut(s) 196
FaeI CATG 4 cut(s) 203, 209, 218, 327
FaiI YATR 6 cut(s) 201, 207, 216, 279, 281, 325
FatI CATG 4 cut(s) 199, 205, 214, 323
FauNDI CATATG 1 cut(s) 279
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 87
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 87
HapII CCGG 1 cut(s) 313
HhaI GCGC 1 cut(s) 105
Hin1II CATG 4 cut(s) 203, 209, 218, 327
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 313
HphI GGTGA 2 cut(s) 16, 76
Hpy188I TCNGA 2 cut(s) 34, 319
Hpy188III TCNNGA 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 55, 298
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 4 cut(s) 203, 209, 218, 327
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 66, 271
LpnPI CCDG 1 cut(s) 326
LweI GCATC 1 cut(s) 13
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 247
MalI GATC 2 cut(s) 68, 273
MboI GATC 2 cut(s) 66, 271
MluCI AATT 2 cut(s) 44, 179
MnlI CCTC 5 cut(s) 28, 48, 51, 170, 294
MroXI GAANNNNTTC 2 cut(s) 180, 308
MslI CAYNNNNRTG 3 cut(s) 132, 204, 216
MspI CCGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeI CATATG 1 cut(s) 279
NdeII GATC 2 cut(s) 66, 271
NlaIII CATG 4 cut(s) 203, 209, 218, 327
OliI CACNNNNGTG 1 cut(s) 132
PagI TCATGA 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 180, 308
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 196
RseI CAYNNNNRTG 3 cut(s) 132, 204, 216
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 66, 271
Sau96I GGNCC 1 cut(s) 196
SetI ASST 6 cut(s) 12, 39, 66, 111, 254, 309
SfaNI GCATC 1 cut(s) 13
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 3 cut(s) 132, 204, 216
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 44, 179
SsiI CCGC 1 cut(s) 86
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 1 cut(s) 111
TasI AATT 2 cut(s) 44, 179
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 179
XmnI GAANNNNTTC 2 cut(s) 180, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.