Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015438

Physical Location & Seq

Genomic Coordinates Forward (+)

490319 .. 494276

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGCGAGAAATGGGTTTGAGAGTGGATGTGTTTCTGCTGGCACTCGCCGTCGTGTGGGCGCCTGTGTTGTCGGATCTGGTGATCTCCAAGGTTGACCGACGCATTGATTTGACATCACAAATTGCGCGGATCACTTCCACGCTGAAGGTGGTGAATGAGGGAAGCAGTTTGGTTACAGAAGTTCTGTTGGCCTTTCCCGAGAATCAGGCTAAACATTTGGCACATCTGACGGCAACCCCCACGGAAGGCAAAGGAAAAGCGAAAGGTTCTAGTATTGGTTACCCAGTTCAAAATGTTCATCCGAAAGACATGCCTCCTGCTTTGACATTTTATTCTGTTGCTTTACCAAAGGGACTGGGCAAGGGGGACAGCTTCACTTTTGATGTATTGGCTGTTTTCACCCATGTATTGAAGCCGTTTCCAGAGAAAATTACTCAGGCTGACATTCAACTCCTAGTGTTTCAGGAAAGCGCATACTACCTCTCTCCTTATGCGGTCAAGGTGCAAACACTCAGTGTTAAATTGCCTGATGCGAGAATTGAGTCTTATACAAAAGTAGAAAATACAAAGAGTGTTGGTTCAGAGATCAAATATGGTCCTTATGAGAATCTTTCTCCCCTTTCCTACTCACCCATAGTTGTTCATTTTGAGAGCAATCAACCTTTTGCTGTTGCTGAAGAGTTGGTGCGAGAGATAGAGATTTCCCATTGGGGTAATATTCAAGTAACAGAGCATTACAAGCTTGTCCATGGAGGTGCTCAAAGCAAGGGAGAATTCTCAAGACTTGATTATCAAGTCAGACCTCATGTCAGAGGTCAATCAGCCATTAGGCGTCTTGTTGCGAAATTGCCACCAAGAGCTCATTCTGTTTACTATAGGGATGAAATAGGCAATGTTTCAACATCCAACTTATGGAGTGATTCTAAGAAGACAGAACTGGAAATCGAACCTAGATACCCTATGTTTGGTGGTTGGAGAACTGCTTTTACCATTGGATATGGCTTGCCGCTTCATGAATATCTGTTTGAATCAGATGGAAAACGTGTCCTTAATATTAGTTTTGGTTGCCCCGTGAATGAGATGGTCATTGACACCCTCATTGTGAAGGTTGTTCTACCTGAGGGCTCTAGAGATATATCTGTATCTGCTCCATTTCCTCTGAAACAAGAGCGAGAGACAAAATTTTCCCACTTGGATCTTGTTGGGAGACCAGTGGTTGTACTCAAAAAGACTAATGCTGTGCCTGAGCATAATCAGAAATTCCAGGTCTATTACAAATTCAACAGCCTCGCAATGCTTACTGAACCGTTGATGTTGATTTCTGGATTTTTCTTTCTTTTCATTGCTGGCATTGTATACATGCATGTGGACATGTCAATATCCAAGTCTTCTCCGTCTTATTTGGCCAAACTGCAGTGGGATGAAGTGCAAGCAGCAATTCAGAAGATCCAAAATATCATCAACCGATGCCTGCTGATACATGATAAGCTGGAAGCATCATTACGTAATCTTTCCCGGACAGGGGATGTCCAAGCTTGTAAAGCTGCTCGGAAAGCAGCTGATGGTTCGTTGAAAGAGCTTTCAAAAGAGATGAAGCCCTTGTTGGCATTCTTGCAATCTTCTCAGCAGGCTGCACAGATACTACCCAAGGTGGAGGAGCTAGTTGTGAAGGAGAAAGATTTAGAAGAAAGGTTAATGGCGAAACACTCTACAGTTGTGGATTGCTATGAGAAGAAGTATGGCGGAAGGGAAATCGAGAGCCGGGTTGCTTCACATCTGCAGAAAATTACCGCCTTGAGGCAGGAGGTTGACGATCTTCTGGAGTTTATTGACGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Ribophorin_I

Protein Analysis

614

Amino Acids

68.84

Weight (kDa)

8.08

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribophorin_I	PF04597	27 - 453	1.5e-149	Ribophorin I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76400 AT1G76400
fragaria_vesca	FvH4_5g25900
malus_domestica	MD06G1005600.v1.1
prunus_persica	Prupe.5G006900_v2.0.a1
pyrus_communis	pycom06g00520
rosa_chinensis	RchiOBHm_Chr6g0264761 RchiOBHm_Chr7g0216411
rosa_laevigata	RLG00000002573
rosa_multiflora	Rmu_sc0000692.1_g000009
rosa_roxburghii	Rroxscaffold_3G00243260
rosa_rugosa	Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh7AG299200 Rh7DG300500
rosa_wichuraiana	Rw7G025430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	1356
AccII	CGCG	1 cut(s)	127
AciI	CCGC	5 cut(s)	127, 494, 1007, 1743, 1791
AclWI	GGATC	4 cut(s)	81, 137, 1203, 1441
AcoI	YGGCCR	1 cut(s)	1404
AcsI	RAATTY	4 cut(s)	773, 1181, 1259, 1277
AcuI	CTGAAG	2 cut(s)	164, 696
AcyI	GRCGYC	2 cut(s)	59, 832
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	1 cut(s)	1221
AfiI	CCNNNNNNNGG	7 cut(s)	54, 245, 912, 965, 1521, 1522, 1797
AflIII	ACRYGT	2 cut(s)	1042, 1371
AgsI	TTSAA	9 cut(s)	290, 412, 449, 722, 900, 1028, 1282, 1573, 1584
AhdI	GACNNNNNGTC	1 cut(s)	806
AjnI	CCWGG	1 cut(s)	1263
AjuI	GAANNNNNNNTTGG	4 cut(s)	847, 879, 1586, 1618
AluBI	AGCT	9 cut(s)	372, 742, 860, 1489, 1535, 1544, 1559, 1579, 1660
AluI	AGCT	9 cut(s)	372, 742, 860, 1489, 1535, 1544, 1559, 1579, 1660
Alw21I	GWGCWC	2 cut(s)	760, 862
Alw26I	GTCTC	2 cut(s)	1169, 1201
AlwI	GGATC	4 cut(s)	81, 137, 1203, 1441
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	189, 1404
ApeKI	GCWGC	4 cut(s)	1433, 1544, 1556, 1631
ApoI	RAATTY	4 cut(s)	773, 1181, 1259, 1277
AspLEI	GCGC	3 cut(s)	61, 127, 473
AspS9I	GGNCC	1 cut(s)	596
AsuC2I	CCSGG	2 cut(s)	1516, 1763
AsuHPI	GGTGA	4 cut(s)	91, 163, 391, 621
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	596
AxyI	CCTNAGG	1 cut(s)	1119
BalI	TGGCCA	1 cut(s)	1406
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	862, 1127
BarI	GAAGNNNNNNTAC	2 cut(s)	1485, 1517
BbsI	GAAGAC	2 cut(s)	935, 1380
Bbv12I	GWGCWC	2 cut(s)	760, 862
BbvI	GCAGC	4 cut(s)	1445, 1531, 1568, 1618
BccI	CCATC	3 cut(s)	1028, 1075, 1556
BceAI	ACGGC	3 cut(s)	32, 246, 400
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	1 cut(s)	1265
BcnI	CCSGG	2 cut(s)	1516, 1763
BcoDI	GTCTC	2 cut(s)	1169, 1201
BfaI	CTAG	5 cut(s)	270, 455, 951, 1128, 1661
BfmI	CTRYAG	4 cut(s)	874, 1412, 1710, 1778
BfoI	RGCGCY	1 cut(s)	62
BisI	GCNGC	5 cut(s)	1007, 1434, 1545, 1557, 1632
BlsI	GCNGC	5 cut(s)	1008, 1435, 1546, 1558, 1633
Bme1390I	CCNGG	3 cut(s)	1265, 1516, 1763
Bme18I	GGWCC	1 cut(s)	596
BmeRI	GACNNNNNGTC	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	1265, 1516, 1763
BmrI	ACTGGG	2 cut(s)	278, 365
BmsI	GCATC	3 cut(s)	520, 1457, 1505
BmuI	ACTGGG	2 cut(s)	278, 365
BpiI	GAAGAC	2 cut(s)	935, 1380
BpmI	CTGGAG	1 cut(s)	1841
Bpu10I	CCTNAGC	1 cut(s)	1245
BpuEI	CTTGAG	2 cut(s)	763, 1816
BpuMI	CCSGG	2 cut(s)	1516, 1763
BsaAI	YACGTR	1 cut(s)	1505
BsaHI	GRCGYC	2 cut(s)	59, 832
BsaI	GGTCTC	1 cut(s)	1201
BsaJI	CCNNGG	4 cut(s)	87, 240, 748, 1647
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 245, 912, 965, 1521, 1522, 1797
Bse1I	ACTGG	4 cut(s)	284, 360, 942, 1211
Bse21I	CCTNAGG	1 cut(s)	1119
Bse3DI	GCAATG	3 cut(s)	898, 1299, 1341
BseBI	CCWGG	1 cut(s)	1265
BseDI	CCNNGG	4 cut(s)	87, 240, 748, 1647
BseGI	GGATG	6 cut(s)	31, 298, 886, 902, 1426, 1531
BseLI	CCNNNNNNNGG	7 cut(s)	54, 245, 912, 965, 1521, 1522, 1797
BseMI	GCAATG	3 cut(s)	898, 1299, 1341
BseMII	CTCAG	5 cut(s)	449, 526, 1110, 1236, 1637
BseNI	ACTGG	4 cut(s)	284, 360, 942, 1211
BseRI	GAGGAG	1 cut(s)	1670
BseXI	GCAGC	4 cut(s)	1445, 1531, 1568, 1618
BsgI	GTGCAG	1 cut(s)	1617
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	2 cut(s)	191, 1406
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	760, 862
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	1516, 1762
BslFI	GGGAC	2 cut(s)	366, 380
BslI	CCNNNNNNNGG	7 cut(s)	54, 245, 912, 965, 1521, 1522, 1797
BsmAI	GTCTC	2 cut(s)	1169, 1201
BsmFI	GGGAC	2 cut(s)	366, 380
BsmI	GAATGC	1 cut(s)	1607
BsnI	GGCC	2 cut(s)	191, 1406
Bso31I	GGTCTC	1 cut(s)	1201
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	760, 862, 1127
Bsp143I	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
Bsp19I	CCATGG	1 cut(s)	748
BspACI	CCGC	5 cut(s)	127, 494, 1007, 1743, 1791
BspANI	GGCC	2 cut(s)	191, 1406
BspCNI	CTCAG	5 cut(s)	448, 525, 1111, 1237, 1636
BspFNI	CGCG	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	1012
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	2 cut(s)	1416, 1782
BspPI	GGATC	4 cut(s)	81, 137, 1203, 1441
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	1201
BsrDI	GCAATG	3 cut(s)	898, 1299, 1341
BsrI	ACTGG	4 cut(s)	284, 360, 942, 1211
BssECI	CCNNGG	4 cut(s)	87, 240, 748, 1647
BssMI	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
BssNAI	GTATAC	1 cut(s)	1357
BssNI	GRCGYC	2 cut(s)	59, 832
BssT1I	CCWWGG	3 cut(s)	87, 748, 1647
Bst1107I	GTATAC	1 cut(s)	1357
Bst2UI	CCWGG	1 cut(s)	1265
Bst4CI	ACNGT	2 cut(s)	1308, 1714
Bst6I	CTCTTC	1 cut(s)	672
BstACI	GRCGYC	2 cut(s)	59, 832
BstBAI	YACGTR	1 cut(s)	1505
BstC8I	GCNNGC	6 cut(s)	39, 1004, 1348, 1431, 1472, 1629
BstDEI	CTNAG	6 cut(s)	435, 512, 924, 1119, 1245, 1623
BstDSI	CCRYGG	2 cut(s)	240, 748
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	6 cut(s)	31, 298, 886, 902, 1426, 1531
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	3 cut(s)	61, 127, 473
BstKTI	GATC	7 cut(s)	76, 84, 132, 588, 1198, 1449, 1816
BstMAI	GTCTC	2 cut(s)	1169, 1201
BstMBI	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
BstMWI	GCNNNNNNNGC	3 cut(s)	739, 1541, 1553
BstNI	CCWGG	1 cut(s)	1265
BstNSI	RCATGY	4 cut(s)	313, 1363, 1367, 1375
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	3 cut(s)	1263, 1514, 1761
BstSFI	CTRYAG	4 cut(s)	874, 1412, 1710, 1778
BstSNI	TACGTA	1 cut(s)	1505
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	4 cut(s)	1445, 1531, 1568, 1618
BstV2I	GAAGAC	2 cut(s)	935, 1380
BstX2I	RGATCY	3 cut(s)	73, 1195, 1446
BstYI	RGATCY	3 cut(s)	73, 1195, 1446
BstZ17I	GTATAC	1 cut(s)	1357
Bsu36I	CCTNAGG	1 cut(s)	1119
BsuRI	GGCC	2 cut(s)	191, 1406
BtgI	CCRYGG	2 cut(s)	240, 748
BtsCI	GGATG	6 cut(s)	31, 298, 886, 902, 1426, 1531
BtsI	GCAGTG	1 cut(s)	1421
BtsIMutI	CAGTG	3 cut(s)	520, 1218, 1421
Cac8I	GCNNGC	6 cut(s)	39, 1004, 1348, 1431, 1472, 1629
CciI	TCATGA	1 cut(s)	1012
CfoI	GCGC	3 cut(s)	61, 127, 473
Cfr13I	GGNCC	1 cut(s)	596
CseI	GACGC	2 cut(s)	108, 821
Csp6I	GTAC	1 cut(s)	1220
CviAII	CATG	9 cut(s)	310, 404, 749, 806, 1013, 1360, 1364, 1372, 1481
CviQI	GTAC	1 cut(s)	1220
DdeI	CTNAG	6 cut(s)	435, 512, 924, 1119, 1245, 1623
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	7 cut(s)	75, 83, 131, 587, 1197, 1448, 1815
DpnII	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
DraIII	CACNNNGTG	1 cut(s)	515
DriI	GACNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	1 cut(s)	1404
Eam1104I	CTCTTC	1 cut(s)	672
Eam1105I	GACNNNNNGTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	672
EciI	GGCGGA	1 cut(s)	1758
Ecl136II	GAGCTC	1 cut(s)	860
Eco105I	TACGTA	1 cut(s)	1505
Eco130I	CCWWGG	3 cut(s)	87, 748, 1647
Eco24I	GRGCYC	2 cut(s)	862, 1127
Eco31I	GGTCTC	1 cut(s)	1201
Eco47I	GGWCC	1 cut(s)	596
Eco53kI	GAGCTC	1 cut(s)	860
Eco57I	CTGAAG	2 cut(s)	164, 696
Eco81I	CCTNAGG	1 cut(s)	1119
Eco88I	CYCGRG	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	860
EcoO65I	GGTNACC	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	773
EcoRII	CCWGG	1 cut(s)	1263
EcoT14I	CCWWGG	3 cut(s)	87, 748, 1647
EcoT22I	ATGCAT	1 cut(s)	1365
EcoT38I	GRGCYC	2 cut(s)	862, 1127
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	3 cut(s)	87, 748, 1647
FaeI	CATG	9 cut(s)	313, 407, 752, 809, 1016, 1363, 1367, 1375, 1484
FaqI	GGGAC	2 cut(s)	366, 380
FatI	CATG	9 cut(s)	309, 403, 748, 805, 1012, 1359, 1363, 1371, 1480
FblI	GTMKAC	1 cut(s)	1356
Fnu4HI	GCNGC	5 cut(s)	1007, 1434, 1545, 1557, 1632
FokI	GGATG	6 cut(s)	38, 285, 889, 893, 1433, 1538
FriOI	GRGCYC	2 cut(s)	862, 1127
Fsp4HI	GCNGC	5 cut(s)	1007, 1434, 1545, 1557, 1632
FspBI	CTAG	5 cut(s)	270, 455, 951, 1128, 1661
GlaI	GCGC	3 cut(s)	60, 126, 472
GluI	GCNGC	5 cut(s)	1007, 1434, 1545, 1557, 1632
GsuI	CTGGAG	1 cut(s)	1841
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	191, 1406
HapII	CCGG	2 cut(s)	1516, 1762
HgaI	GACGC	2 cut(s)	108, 821
HhaI	GCGC	3 cut(s)	61, 127, 473
Hin1I	GRCGYC	2 cut(s)	59, 832
Hin1II	CATG	9 cut(s)	313, 407, 752, 809, 1016, 1363, 1367, 1375, 1484
Hin6I	GCGC	3 cut(s)	59, 125, 471
HinP1I	GCGC	3 cut(s)	59, 125, 471
HincII	GTYRAC	2 cut(s)	94, 1810
HindII	GTYRAC	2 cut(s)	94, 1810
HindIII	AAGCTT	2 cut(s)	740, 1533
HinfI	GANTC	5 cut(s)	202, 542, 607, 920, 1028
HpaII	CCGG	2 cut(s)	1516, 1762
HphI	GGTGA	4 cut(s)	91, 163, 391, 621
Hpy166II	GTNNAC	5 cut(s)	94, 871, 1357, 1369, 1810
Hpy188III	TCNNGA	9 cut(s)	197, 422, 464, 780, 1013, 1128, 1323, 1756, 1820
Hpy8I	GTNNAC	5 cut(s)	94, 871, 1357, 1369, 1810
Hpy99I	CGWCG	2 cut(s)	53, 102
HpyAV	CCTTC	5 cut(s)	139, 239, 1099, 1663, 1740
HpyCH4III	ACNGT	2 cut(s)	1308, 1714
HpyCH4IV	ACGT	2 cut(s)	1042, 1504
HpyCH4V	TGCA	7 cut(s)	505, 1363, 1414, 1429, 1615, 1634, 1780
HpyF10VI	GCNNNNNNNGC	3 cut(s)	739, 1541, 1553
HpyF3I	CTNAG	6 cut(s)	435, 512, 924, 1119, 1245, 1623
HpySE526I	ACGT	2 cut(s)	1042, 1504
Hsp92I	GRCGYC	2 cut(s)	59, 832
Hsp92II	CATG	9 cut(s)	313, 407, 752, 809, 1016, 1363, 1367, 1375, 1484
HspAI	GCGC	3 cut(s)	59, 125, 471
KasI	GGCGCC	1 cut(s)	58
Kzo9I	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
LmnI	GCTCC	2 cut(s)	1153, 1657
Lsp1109I	GCAGC	4 cut(s)	1445, 1531, 1568, 1618
LweI	GCATC	3 cut(s)	520, 1457, 1505
MaeI	CTAG	5 cut(s)	270, 455, 951, 1128, 1661
MaeII	ACGT	2 cut(s)	1042, 1504
MaeIII	GTNAC	3 cut(s)	172, 278, 724
MalI	GATC	7 cut(s)	75, 83, 131, 587, 1197, 1448, 1815
MboI	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
MboII	GAAGA	8 cut(s)	689, 940, 1380, 1456, 1611, 1697, 1744, 1808
MflI	RGATCY	3 cut(s)	73, 1195, 1446
MhlI	GDGCHC	3 cut(s)	760, 862, 1127
MlsI	TGGCCA	1 cut(s)	1406
MluNI	TGGCCA	1 cut(s)	1406
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	551
MmeI	TCCRAC	3 cut(s)	51, 930, 953
Mox20I	TGGCCA	1 cut(s)	1406
Mph1103I	ATGCAT	1 cut(s)	1365
MscI	TGGCCA	1 cut(s)	1406
MseI	TTAA	3 cut(s)	519, 1050, 1694
MslI	CAYNNNNRTG	2 cut(s)	753, 1364
Msp20I	TGGCCA	1 cut(s)	1406
MspA1I	CMGCKG	1 cut(s)	1559
MspI	CCGG	2 cut(s)	1516, 1762
MspR9I	CCNGG	3 cut(s)	1265, 1516, 1763
Mva1269I	GAATGC	1 cut(s)	1607
MvaI	CCWGG	1 cut(s)	1265
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	3 cut(s)	739, 1541, 1553
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	2 cut(s)	1516, 1763
NcoI	CCATGG	1 cut(s)	748
NdeII	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
NlaIII	CATG	9 cut(s)	313, 407, 752, 809, 1016, 1363, 1367, 1375, 1484
NlaIV	GGNNCC	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	1365
NspI	RCATGY	4 cut(s)	313, 1363, 1367, 1375
PagI	TCATGA	1 cut(s)	1012
PciI	ACATGT	1 cut(s)	1371
PctI	GAATGC	1 cut(s)	1607
PfeI	GAWTC	4 cut(s)	202, 607, 920, 1028
PflMI	CCANNNNNTGG	1 cut(s)	912
PfoI	TCCNGGA	1 cut(s)	1514
PkrI	GCNGC	5 cut(s)	1008, 1435, 1546, 1558, 1633
PleI	GAGTC	1 cut(s)	550
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	550
Ppu21I	YACGTR	1 cut(s)	1505
PscI	ACATGT	1 cut(s)	1371
Psp124BI	GAGCTC	1 cut(s)	862
Psp6I	CCWGG	1 cut(s)	1263
PspEI	GGTNACC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	1263
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	596
PsrI	GAACNNNNNNTAC	2 cut(s)	970, 1002
PstI	CTGCAG	2 cut(s)	1416, 1782
PsuI	RGATCY	3 cut(s)	73, 1195, 1446
PvuII	CAGCTG	1 cut(s)	1559
RsaI	GTAC	1 cut(s)	1221
RsaNI	GTAC	1 cut(s)	1220
RseI	CAYNNNNRTG	2 cut(s)	753, 1364
SacI	GAGCTC	1 cut(s)	862
SaqAI	TTAA	3 cut(s)	519, 1050, 1694
SatI	GCNGC	5 cut(s)	1007, 1434, 1545, 1557, 1632
Sau3AI	GATC	7 cut(s)	73, 81, 129, 585, 1195, 1446, 1813
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	3 cut(s)	1265, 1516, 1763
SduI	GDGCHC	3 cut(s)	760, 862, 1127
SfaNI	GCATC	3 cut(s)	520, 1457, 1505
SfcI	CTRYAG	4 cut(s)	874, 1412, 1710, 1778
SfoI	GGCGCC	1 cut(s)	60
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	2 cut(s)	753, 1364
SmlI	CTYRAG	2 cut(s)	778, 1795
SmoI	CTYRAG	2 cut(s)	778, 1795
SnaBI	TACGTA	1 cut(s)	1505
SsiI	CCGC	5 cut(s)	127, 494, 1007, 1743, 1791
SspDI	GGCGCC	1 cut(s)	58
SspI	AATATT	2 cut(s)	718, 1054
SspMI	CTAG	5 cut(s)	270, 455, 951, 1128, 1661
SstI	GAGCTC	1 cut(s)	862
StyD4I	CCNGG	3 cut(s)	1263, 1514, 1761
StyI	CCWWGG	3 cut(s)	87, 748, 1647
TaaI	ACNGT	2 cut(s)	1308, 1714
TaiI	ACGT	2 cut(s)	1045, 1507
TaqI	TCGA	2 cut(s)	945, 1755
TaqII	GACCGA	1 cut(s)	111
TatI	WGTACW	1 cut(s)	1219
TauI	GCSGC	1 cut(s)	1009
TfiI	GAWTC	4 cut(s)	202, 607, 920, 1028
Tru1I	TTAA	3 cut(s)	519, 1050, 1694
Tru9I	TTAA	3 cut(s)	519, 1050, 1694
TscAI	CASTG	3 cut(s)	520, 1218, 1421
TseI	GCWGC	4 cut(s)	1433, 1544, 1556, 1631
TspDTI	ATGAA	8 cut(s)	287, 632, 897, 1001, 1029, 1330, 1437, 1607
TspGWI	ACGGA	2 cut(s)	257, 1383
TspRI	CASTG	3 cut(s)	520, 1218, 1421
Van91I	CCANNNNNTGG	1 cut(s)	912
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	4 cut(s)	773, 1181, 1259, 1277
XbaI	TCTAGA	1 cut(s)	1127
XceI	RCATGY	4 cut(s)	313, 1363, 1367, 1375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	1356
XspI	CTAG	5 cut(s)	270, 455, 951, 1128, 1661
Zsp2I	ATGCAT	1 cut(s)	1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.