Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

12776514 .. 12779624

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0160300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGGAGGGTGCTGTTGTTGTGCTTCCAAAGCAACCGAGCTGAGGGCCGCACCTACATACTACTATGTTTATCCGAGGACATCTGAAGAGCACGTGCCCCTGTCATCTCGCCAAGGTGCCTCTGCACTCTCCACAGGCCTCCTTGTTGACACGAACTTGGATACATCAATACCTGACACTTATAGACCACCTCCTGCCCCTATTCCATATGATGTGTCAGCAGGGCGTCCTCAGACTCCACCAGTGGCCCAAGAAATTTCTGGCAACAAGAGTGATGCAACATTGCAGACAACAACAACTTCTGATTCTGTTCAAGAAGCAGCTGGTGACAATCCTCAAGAAACTTCATCCAAGTGTGAAGACCTGAAGTACAAAGTGGACACCAAGTTAGAGCTTGATCCAATTAAGAAGGCAGAAGTTGAACTTTCGAAACCAGTGGAATCTGTTGCTTTAGTCACTGAGGAGGAGGATGTTTGCCCCACCTGCTTGGAAGAGTATGATGAAGAAAATCCAAAAATTACCACGAAATGCGACCACCATTTTCACCTTGCTTGCATTCTTGAATGGATGGAAAGAAGTGACACATGTCCCGTGTGTGATCAGGAAATGATATTTGATCCTCCTATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

Ribophorin_I

Protein Analysis

210

Amino Acids

23.05

Weight (kDa)

4.39

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	156 - 199	1.6e-11	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	157 - 205	4.7e-08	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	158 - 199	2.8e-12	Ring finger domain
zf-C3HC4_2	PF13923	159 - 199	1.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	159 - 199	4.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	159 - 197	8.1e-07	RING-type zinc-finger
zf-RING_5	PF14634	159 - 201	2.5e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	116
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	392, 611
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	105, 386
AcvI	CACGTG	1 cut(s)	94
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	314, 422, 563
AluBI	AGCT	3 cut(s)	40, 323, 394
AluI	AGCT	3 cut(s)	40, 323, 394
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	392, 611
AoxI	GGCC	3 cut(s)	45, 136, 246
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	45, 247
AsuHPI	GGTGA	2 cut(s)	338, 536
AsuII	TTCGAA	1 cut(s)	428
BaeGI	GKGCMC	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	562
BciVI	GTATCC	1 cut(s)	154
BclI	TGATCA	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	491
BfuI	GTATCC	1 cut(s)	154
BisI	GCNGC	2 cut(s)	48, 321
BlsI	GCNGC	2 cut(s)	49, 322
BmgT120I	GGNCC	2 cut(s)	45, 247
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	226
BsaJI	CCNNGG	2 cut(s)	74, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse1I	ACTGG	2 cut(s)	242, 434
Bse3DI	GCAATG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	74, 112
BseGI	GGATG	3 cut(s)	347, 475, 573
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	32, 245, 450
BseNI	ACTGG	2 cut(s)	242, 434
BseRI	GAGGAG	2 cut(s)	476, 479
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	108
BshFI	GGCC	3 cut(s)	47, 138, 248
BshNI	GGYRCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	555
BsnI	GGCC	3 cut(s)	47, 138, 248
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	93, 99
Bsp143I	GATC	3 cut(s)	397, 598, 616
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	47, 138, 248
BspCNI	CTCAG	3 cut(s)	33, 244, 451
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	392, 611
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	242, 434
BssECI	CCNNGG	2 cut(s)	74, 112
BssMI	GATC	3 cut(s)	397, 598, 616
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	112
Bst6I	CTCTTC	2 cut(s)	81, 486
BstACI	GRCGYC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	553
BstDEI	CTNAG	3 cut(s)	41, 231, 459
BstF5I	GGATG	3 cut(s)	347, 475, 573
BstKTI	GATC	3 cut(s)	400, 601, 619
BstMBI	GATC	3 cut(s)	397, 598, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 483
BstNSI	RCATGY	1 cut(s)	588
BstPAI	GACNNNNGTC	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	366
BstXI	CCANNNNNNTGG	1 cut(s)	487
BsuI	GTATCC	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	47, 138, 248
BtsCI	GGATG	3 cut(s)	347, 475, 573
BtsIMutI	CAGTG	3 cut(s)	249, 441, 456
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	553
Cfr13I	GGNCC	2 cut(s)	45, 247
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	1 cut(s)	585
CviJI	RGCY	6 cut(s)	40, 47, 138, 248, 323, 394
CviKI_1	RGCY	6 cut(s)	40, 47, 138, 248, 323, 394
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	41, 231, 459
DpnI	GATC	3 cut(s)	399, 600, 618
DpnII	GATC	3 cut(s)	397, 598, 616
Eam1104I	CTCTTC	2 cut(s)	81, 486
EarI	CTCTTC	2 cut(s)	81, 486
Eco130I	CCWWGG	1 cut(s)	112
Eco147I	AGGCCT	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	105, 386
Eco72I	CACGTG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	588
FaiI	YATR	7 cut(s)	58, 66, 183, 208, 210, 498, 586
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	1 cut(s)	584
FauNDI	CATATG	1 cut(s)	208
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	2 cut(s)	48, 321
FokI	GGATG	3 cut(s)	334, 482, 580
Fsp4HI	GCNGC	2 cut(s)	48, 321
GluI	GCNGC	2 cut(s)	48, 321
HaeIII	GGCC	3 cut(s)	47, 138, 248
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	1 cut(s)	588
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	3 cut(s)	235, 305, 440
HphI	GGTGA	2 cut(s)	338, 536
Hpy166II	GTNNAC	2 cut(s)	148, 379
Hpy188I	TCNGA	4 cut(s)	75, 85, 234, 304
Hpy188III	TCNNGA	4 cut(s)	314, 338, 560, 602
Hpy8I	GTNNAC	2 cut(s)	148, 379
HpyAV	CCTTC	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	125, 278, 286, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 483
HpyF3I	CTNAG	3 cut(s)	41, 231, 459
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	588
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	397, 598, 616
LguI	GCTCTTC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	326, 454, 578
MalI	GATC	3 cut(s)	399, 600, 618
MboI	GATC	3 cut(s)	397, 598, 616
MboII	GAAGA	4 cut(s)	98, 371, 503, 515
MhlI	GDGCHC	2 cut(s)	93, 99
MluCI	AATT	3 cut(s)	255, 402, 516
MlyI	GAGTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	555
MwoI	GCNNNNNNNGC	2 cut(s)	29, 483
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	397, 598, 616
NlaIII	CATG	1 cut(s)	588
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	3 cut(s)	326, 454, 578
NspI	RCATGY	1 cut(s)	588
NspV	TTCGAA	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	491
PceI	AGGCCT	1 cut(s)	138
PciI	ACATGT	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	81
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	305, 440
PkrI	GCNGC	2 cut(s)	49, 322
PleI	GAGTC	1 cut(s)	229
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	94
PscI	ACATGT	1 cut(s)	584
PshAI	GACNNNNGTC	1 cut(s)	585
PspCI	CACGTG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	45, 247
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	352
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	48, 321
Sau3AI	GATC	3 cut(s)	397, 598, 616
Sau96I	GGNCC	2 cut(s)	45, 247
SchI	GAGTC	1 cut(s)	229
SduI	GDGCHC	2 cut(s)	93, 99
SfaNI	GCATC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	255, 402, 516
SseBI	AGGCCT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	112
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	428
TasI	AATT	3 cut(s)	255, 402, 516
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	305, 440
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	3 cut(s)	249, 441, 463
TseFI	GTSAC	3 cut(s)	326, 454, 578
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	3 cut(s)	326, 454, 578
TspDTI	ATGAA	2 cut(s)	336, 516
TspRI	CASTG	3 cut(s)	249, 441, 463
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.