RchiOBHm_Chr3g0487931

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
35371770 .. 35373156
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45234

Sequence Viewer

Length: 1248 bp
ATGGCCGAAGCATGCACCCATCCACTGTTAAAAATCACCTCGAGGAAGATGATTAAACTCTCATCTCCAACTCCTCGTCACCAAAGAAATCTCCAGCTCTCTTTTCTGGACCAAATGCTGCTTCCTATCTCCTCATCACCAAAGAAATCTCCAGCTCTCTTTTCTGGACCAACTGCTGCTTCTTACCTTATACAGAGCTTGCAAGCATCTCTCTCCAAAGCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCCTTCGTTGACTGCAACGACGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACTGCCAGCGCTCGGATTTACTTAAAGTTCCTGAGCATAAGTTGCTTAACAACCTTATCCCCGAGTTTGAGCCTAAAACAGTTCAGTTAGCGTTGGGTTCAGTTGTTTTAATTGTTCAAGTGAGTCTTTTCAACTGTGGAGGAATAGCTGTTGCTGCGTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTACACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGATACCGGAGTTTAATGGAGCATCTGTGCTGCCTCCCAGAGAATTGTCACCCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGGTGTCACAAAGATTGAAAGTCTCAAGACCAAAATTGGAGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCTGAGACTACTTCAAGCACAAATGTGTTGTCCCAAATTGTAAGTTTCCGCAACAGAATAGTCCCCGCGGTACCACCAAATGTCGTGGGTAATTGGTTTTGGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTCCGAGTCACTTAGAGAGAGGGGTGAGTTCTTTAAGAGCACAAAGGTGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGATCCCGGTACATGAAATTGATTTTGTTTGGGGGAAATCAACTTGGGTCACTAGCCAAAGCAACCACAAGAACCTATTTCTCCTGATCGACACAAAACATGGAGATGGCATCGAAGTGTGGGTGACACTGGATGAAGAAGAAATGGCTATATTTGAGAGTGAAGAGGAGCTCCTTTCATTTGCTTGTGCAAACCCTAGTGCAATTGTTAATCATCAATCTCACTCTCGTATGTGA

Protein Analysis

415

Amino Acids

45.89

Weight (kDa)

8.97

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 293 1.9e-43 Transferase family
Transferase PF02458 329 - 395 3.1e-10 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 40
Acc65I GGTACC 1 cut(s) 853
AccB1I GGYRCC 1 cut(s) 853
AccB7I CCANNNNNTGG 1 cut(s) 245
AccII CGCG 1 cut(s) 851
AciI CCGC 5 cut(s) 261, 832, 849, 851, 893
AclWI GGATC 1 cut(s) 1009
AcoI YGGCCR 2 cut(s) 3, 247
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 3 cut(s) 855, 1000, 1023
AfeI AGCGCT 1 cut(s) 326
AfiI CCNNNNNNNGG 2 cut(s) 245, 328
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 5 cut(s) 434, 448, 692, 798, 904
AhlI ACTAGT 1 cut(s) 562
AjuI GAANNNNNNNTTGG 4 cut(s) 105, 137, 163, 195
AleI CACNNNNGTG 2 cut(s) 806, 974
AluBI AGCT 7 cut(s) 97, 155, 198, 221, 293, 464, 1183
AluI AGCT 7 cut(s) 97, 155, 198, 221, 293, 464, 1183
Alw21I GWGCWC 4 cut(s) 295, 760, 971, 1185
Alw26I GTCTC 2 cut(s) 701, 782
AlwI GGATC 1 cut(s) 1009
Ama87I CYCGRG 3 cut(s) 40, 309, 377
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 3 cut(s) 3, 247, 306
ApeKI GCWGC 7 cut(s) 118, 176, 263, 470, 533, 595, 764
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 2 cut(s) 797, 829
AseI ATTAAT 1 cut(s) 635
Asp718I GGTACC 1 cut(s) 853
AspLEI GCGC 2 cut(s) 327, 506
AspS9I GGNCC 3 cut(s) 109, 167, 307
AsuC2I CCSGG 2 cut(s) 923, 1019
AsuHPI GGTGA 7 cut(s) 28, 71, 129, 560, 606, 965, 1147
AvaI CYCGRG 3 cut(s) 40, 309, 377
AvaII GGWCC 2 cut(s) 109, 167
BaeI ACNNNNGTAYC 2 cut(s) 560, 593
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 2 cut(s) 295, 1185
Bbv12I GWGCWC 4 cut(s) 295, 760, 971, 1185
BbvI GCAGC 7 cut(s) 105, 163, 250, 457, 545, 582, 751
BccI CCATC 3 cut(s) 27, 908, 1112
BcgI CGANNNNNNTGC 2 cut(s) 300, 334
BcnI CCSGG 2 cut(s) 923, 1019
BcoDI GTCTC 2 cut(s) 701, 782
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 3 cut(s) 563, 1065, 1209
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 7 cut(s) 119, 177, 264, 471, 534, 596, 765
BlsI GCNGC 7 cut(s) 120, 178, 265, 472, 535, 597, 766
Bme1390I CCNGG 2 cut(s) 923, 1019
Bme18I GGWCC 2 cut(s) 109, 167
BmeT110I CYCGRG 3 cut(s) 40, 309, 377
BmgT120I GGNCC 3 cut(s) 109, 167, 307
BmiI GGNNCC 1 cut(s) 855
BmrFI CCNGG 2 cut(s) 923, 1019
BmsI GCATC 5 cut(s) 215, 487, 596, 990, 1131
BpmI CTGGAG 2 cut(s) 77, 135
Bpu10I CCTNAGC 1 cut(s) 348
BpuEI CTTGAG 2 cut(s) 323, 683
BpuMI CCSGG 2 cut(s) 923, 1019
BsaJI CCNNGG 1 cut(s) 849
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 328
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 1146
BseDI CCNNGG 1 cut(s) 849
BseGI GGATG 2 cut(s) 19, 1150
BseLI CCNNNNNNNGG 2 cut(s) 245, 328
BseMII CTCAG 3 cut(s) 339, 763, 777
BseNI ACTGG 1 cut(s) 1146
BseRI GAGGAG 3 cut(s) 63, 121, 1193
BseXI GCAGC 7 cut(s) 105, 163, 250, 457, 545, 582, 751
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 3 cut(s) 5, 249, 308
BshNI GGYRCC 1 cut(s) 853
BsiHKAI GWGCWC 4 cut(s) 295, 760, 971, 1185
BsiHKCI CYCGRG 3 cut(s) 40, 309, 377
BsiSI CCGG 4 cut(s) 501, 572, 922, 1019
BslFI GGGAC 3 cut(s) 460, 799, 830
BslI CCNNNNNNNGG 2 cut(s) 245, 328
BsmAI GTCTC 2 cut(s) 701, 782
BsmFI GGGAC 3 cut(s) 460, 799, 830
BsnI GGCC 3 cut(s) 5, 249, 308
BsoBI CYCGRG 3 cut(s) 40, 309, 377
Bsp1286I GDGCHC 4 cut(s) 295, 760, 971, 1185
Bsp143I GATC 4 cut(s) 489, 556, 1014, 1098
BspACI CCGC 5 cut(s) 261, 832, 849, 851, 893
BspANI GGCC 3 cut(s) 5, 249, 308
BspCNI CTCAG 3 cut(s) 340, 762, 778
BspFNI CGCG 1 cut(s) 851
BspLI GGNNCC 1 cut(s) 855
BspPI GGATC 1 cut(s) 1009
BspT107I GGYRCC 1 cut(s) 853
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 1 cut(s) 1146
BssAI RCCGGY 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 849
BssMI GATC 4 cut(s) 489, 556, 1014, 1098
Bst4CI ACNGT 3 cut(s) 27, 397, 452
Bst6I CTCTTC 2 cut(s) 236, 1170
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 6 cut(s) 13, 200, 204, 247, 323, 502
BstDEI CTNAG 4 cut(s) 348, 749, 786, 941
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 2 cut(s) 19, 1150
BstFNI CGCG 1 cut(s) 851
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 327, 506
BstKTI GATC 4 cut(s) 492, 559, 1017, 1101
BstMAI GTCTC 2 cut(s) 701, 782
BstMBI GATC 4 cut(s) 489, 556, 1014, 1098
BstMWI GCNNNNNNNGC 3 cut(s) 358, 470, 764
BstNSI RCATGY 2 cut(s) 15, 725
BstSCI CCNGG 2 cut(s) 921, 1017
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 7 cut(s) 105, 163, 250, 457, 545, 582, 751
BstX2I RGATCY 1 cut(s) 1014
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 1 cut(s) 1014
BsuRI GGCC 3 cut(s) 5, 249, 308
BtgI CCRYGG 1 cut(s) 849
BtsCI GGATG 2 cut(s) 19, 1150
BtsIMutI CAGTG 2 cut(s) 23, 1139
Cac8I GCNNGC 6 cut(s) 13, 200, 204, 247, 323, 502
CfoI GCGC 2 cut(s) 327, 506
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 3 cut(s) 109, 167, 307
Cfr42I CCGCGG 1 cut(s) 852
CseI GACGC 1 cut(s) 462
Csp6I GTAC 3 cut(s) 854, 999, 1022
CspCI CAANNNNNGTGG 2 cut(s) 849, 884
CviAII CATG 5 cut(s) 12, 528, 722, 1025, 1112
CviQI GTAC 3 cut(s) 854, 999, 1022
DdeI CTNAG 4 cut(s) 348, 749, 786, 941
DpnI GATC 4 cut(s) 491, 558, 1016, 1100
DpnII GATC 4 cut(s) 489, 556, 1014, 1098
EaeI YGGCCR 2 cut(s) 3, 247
Eam1104I CTCTTC 2 cut(s) 236, 1170
EarI CTCTTC 2 cut(s) 236, 1170
EciI GGCGGA 1 cut(s) 908
Ecl136II GAGCTC 2 cut(s) 293, 1183
Eco24I GRGCYC 2 cut(s) 295, 1185
Eco47I GGWCC 2 cut(s) 109, 167
Eco47III AGCGCT 1 cut(s) 326
Eco53kI GAGCTC 2 cut(s) 293, 1183
Eco88I CYCGRG 3 cut(s) 40, 309, 377
EcoICRI GAGCTC 2 cut(s) 293, 1183
EcoT38I GRGCYC 2 cut(s) 295, 1185
FaeI CATG 5 cut(s) 15, 531, 725, 1028, 1115
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 3 cut(s) 460, 799, 830
FatI CATG 5 cut(s) 11, 527, 721, 1024, 1111
FauI CCCGC 1 cut(s) 856
Fnu4HI GCNGC 7 cut(s) 119, 177, 264, 471, 534, 596, 765
FokI GGATG 2 cut(s) 6, 1157
FriOI GRGCYC 2 cut(s) 295, 1185
Fsp4HI GCNGC 7 cut(s) 119, 177, 264, 471, 534, 596, 765
FspBI CTAG 3 cut(s) 563, 1065, 1209
GlaI GCGC 2 cut(s) 326, 505
GluI GCNGC 7 cut(s) 119, 177, 264, 471, 534, 596, 765
GsuI CTGGAG 2 cut(s) 77, 135
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 5, 249, 308
HapII CCGG 4 cut(s) 501, 572, 922, 1019
HgaI GACGC 1 cut(s) 462
HhaI GCGC 2 cut(s) 327, 506
Hin1II CATG 5 cut(s) 15, 531, 725, 1028, 1115
Hin6I GCGC 2 cut(s) 325, 504
HinP1I GCGC 2 cut(s) 325, 504
HincII GTYRAC 3 cut(s) 274, 316, 654
HindII GTYRAC 3 cut(s) 274, 316, 654
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 5 cut(s) 439, 551, 900, 918, 935
HpaI GTTAAC 1 cut(s) 316
HpaII CCGG 4 cut(s) 501, 572, 922, 1019
HphI GGTGA 7 cut(s) 28, 71, 129, 560, 606, 965, 1147
Hpy166II GTNNAC 3 cut(s) 274, 316, 654
Hpy188I TCNGA 5 cut(s) 331, 494, 556, 752, 934
Hpy188III TCNNGA 6 cut(s) 107, 165, 302, 347, 700, 1096
Hpy8I GTNNAC 3 cut(s) 274, 316, 654
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 277, 281, 883
HpyCH4III ACNGT 3 cut(s) 27, 397, 452
HpyCH4V TGCA 7 cut(s) 15, 202, 279, 981, 1011, 1202, 1214
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 470, 764
HpyF3I CTNAG 4 cut(s) 348, 749, 786, 941
Hsp92II CATG 5 cut(s) 15, 531, 725, 1028, 1115
HspAI GCGC 2 cut(s) 325, 504
KpnI GGTACC 1 cut(s) 857
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 852
Kzo9I GATC 4 cut(s) 489, 556, 1014, 1098
LmnI GCTCC 4 cut(s) 290, 584, 1180, 1188
Lsp1109I GCAGC 7 cut(s) 105, 163, 250, 457, 545, 582, 751
LweI GCATC 5 cut(s) 215, 487, 596, 990, 1131
MaeI CTAG 3 cut(s) 563, 1065, 1209
MaeIII GTNAC 6 cut(s) 77, 612, 679, 936, 1060, 1135
MalI GATC 4 cut(s) 491, 558, 1016, 1100
MboI GATC 4 cut(s) 489, 556, 1014, 1098
MboII GAAGA 6 cut(s) 58, 223, 923, 1160, 1163, 1187
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 1 cut(s) 1014
MhlI GDGCHC 4 cut(s) 295, 760, 971, 1185
MluCI AATT 9 cut(s) 426, 515, 608, 708, 741, 819, 874, 1029, 1215
MlyI GAGTC 2 cut(s) 448, 944
MmeI TCCRAC 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 500
MslI CAYNNNNRTG 6 cut(s) 526, 546, 806, 974, 1116, 1127
MspA1I CMGCKG 2 cut(s) 263, 851
MspI CCGG 4 cut(s) 501, 572, 922, 1019
MspR9I CCNGG 2 cut(s) 923, 1019
MunI CAATTG 1 cut(s) 1215
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 358, 470, 764
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 2 cut(s) 923, 1019
NdeII GATC 4 cut(s) 489, 556, 1014, 1098
NgoMIV GCCGGC 1 cut(s) 500
NlaIII CATG 5 cut(s) 15, 531, 725, 1028, 1115
NlaIV GGNNCC 1 cut(s) 855
NmuCI GTSAC 6 cut(s) 77, 612, 679, 936, 1060, 1135
NspI RCATGY 2 cut(s) 15, 725
OliI CACNNNNGTG 2 cut(s) 806, 974
PaeI GCATGC 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 40
PciI ACATGT 1 cut(s) 721
PdiI GCCGGC 1 cut(s) 502
PfeI GAWTC 3 cut(s) 551, 900, 918
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 7 cut(s) 120, 178, 265, 472, 535, 597, 766
PleI GAGTC 2 cut(s) 447, 943
PpsI GAGTC 2 cut(s) 447, 943
PscI ACATGT 1 cut(s) 721
PshBI ATTAAT 1 cut(s) 635
Psp124BI GAGCTC 2 cut(s) 295, 1185
PspN4I GGNNCC 1 cut(s) 855
PspPI GGNCC 3 cut(s) 109, 167, 307
PspXI VCTCGAGB 1 cut(s) 40
PsuI RGATCY 1 cut(s) 1014
RsaI GTAC 3 cut(s) 855, 1000, 1023
RsaNI GTAC 3 cut(s) 854, 999, 1022
RseI CAYNNNNRTG 6 cut(s) 526, 546, 806, 974, 1116, 1127
SacI GAGCTC 2 cut(s) 295, 1185
SacII CCGCGG 1 cut(s) 852
SatI GCNGC 7 cut(s) 119, 177, 264, 471, 534, 596, 765
Sau3AI GATC 4 cut(s) 489, 556, 1014, 1098
Sau96I GGNCC 3 cut(s) 109, 167, 307
SchI GAGTC 2 cut(s) 448, 944
ScrFI CCNGG 2 cut(s) 923, 1019
SduI GDGCHC 4 cut(s) 295, 760, 971, 1185
SfaNI GCATC 5 cut(s) 215, 487, 596, 990, 1131
Sfr274I CTCGAG 1 cut(s) 40
Sfr303I CCGCGG 1 cut(s) 852
SgrBI CCGCGG 1 cut(s) 852
SinI GGWCC 2 cut(s) 109, 167
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 6 cut(s) 526, 546, 806, 974, 1116, 1127
SmlI CTYRAG 3 cut(s) 40, 302, 698
SmoI CTYRAG 3 cut(s) 40, 302, 698
SpeI ACTAGT 1 cut(s) 562
SphI GCATGC 1 cut(s) 15
Sse9I AATT 9 cut(s) 426, 515, 608, 708, 741, 819, 874, 1029, 1215
SsiI CCGC 5 cut(s) 261, 832, 849, 851, 893
SspMI CTAG 3 cut(s) 563, 1065, 1209
SstI GAGCTC 2 cut(s) 295, 1185
StyD4I CCNGG 2 cut(s) 921, 1017
TaaI ACNGT 3 cut(s) 27, 397, 452
TaqI TCGA 4 cut(s) 41, 779, 1101, 1125
TasI AATT 9 cut(s) 426, 515, 608, 708, 741, 819, 874, 1029, 1215
TfiI GAWTC 3 cut(s) 551, 900, 918
TscAI CASTG 2 cut(s) 30, 1146
TseFI GTSAC 6 cut(s) 77, 612, 679, 936, 1060, 1135
TseI GCWGC 7 cut(s) 118, 176, 263, 470, 533, 595, 764
Tsp45I GTSAC 6 cut(s) 77, 612, 679, 936, 1060, 1135
TspDTI ATGAA 3 cut(s) 1041, 1161, 1179
TspRI CASTG 2 cut(s) 30, 1146
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 2 cut(s) 109, 167
VspI ATTAAT 1 cut(s) 635
XapI RAATTY 1 cut(s) 515
XceI RCATGY 2 cut(s) 15, 725
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 3 cut(s) 563, 1065, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.