Rorug03G0237400

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
22094776 .. 22099164
4389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0237400.1

Sequence Viewer

Length: 369 bp
ATGATGTTGCAAAAAGGAAAAGAAAAATGTTTCTATCAACCCTGCAGTATAGGATCAACTTTCACACCAAAGCCTCAGGGGAAGTTTCTTGCTACAGAAAATTTCTTTCACACATTCAAGAGGATTGGTCAAAGTGAAAGAAGAGATATCAAGCATTTGATGAAGAAGCTTTGCTGCAGTATTGCTTCTCTTCAGCATATTCTGTTGCCTTACTTCAGGACAGTCTTGGAATCTCTTTGGATGATGAAAGGGAACAGGAATAAGGGGATTGGGTCTATGCTTTCGGCCAGGGAAGAGAGCAGTCTATATGAATTGAAGATGATTTTGTTGTGGATGATAAGATTGTTGCACATCATGAGGTGGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

14.45

Weight (kDa)

9.98

Isoelectric Point (pI)

62.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 2 cut(s) 176, 199
AgsI TTSAA 2 cut(s) 118, 316
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 1 cut(s) 61
AoxI GGCC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 100
AxyI CCTNAGG 1 cut(s) 75
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 367
BfmI CTRYAG 3 cut(s) 43, 93, 175
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 288
Bse21I CCTNAGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 246, 339
BseMII CTCAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 287
BsnI GGCC 1 cut(s) 287
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 1 cut(s) 287
BspCNI CTCAG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 354
BspMAI CTGCAG 2 cut(s) 47, 179
BspPI GGATC 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 223
Bst6I CTCTTC 3 cut(s) 136, 195, 288
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 246, 339
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 3 cut(s) 43, 93, 175
BstV1I GCAGC 1 cut(s) 161
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 287
BtsCI GGATG 2 cut(s) 246, 339
CciI TCATGA 1 cut(s) 354
CviAII CATG 1 cut(s) 355
CviJI RGCY 3 cut(s) 73, 169, 287
CviKI_1 RGCY 3 cut(s) 73, 169, 287
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 285
Eam1104I CTCTTC 3 cut(s) 136, 195, 288
EarI CTCTTC 3 cut(s) 136, 195, 288
Eco32I GATATC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 176, 199
Eco81I CCTNAGG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 287
EcoRV GATATC 1 cut(s) 148
FaeI CATG 1 cut(s) 358
FaiI YATR 6 cut(s) 50, 198, 278, 307, 309, 356
FatI CATG 1 cut(s) 354
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 2 cut(s) 253, 346
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 1 cut(s) 367
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 287
Hin1II CATG 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 1 cut(s) 230
Hpy188III TCNNGA 3 cut(s) 118, 217, 355
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 10, 45, 177, 349
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 1 cut(s) 358
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 6 cut(s) 55, 62, 202, 241, 274, 301
Lsp1109I GCAGC 1 cut(s) 161
MaeI CTAG 1 cut(s) 367
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 5 cut(s) 153, 175, 182, 305, 328
MluCI AATT 2 cut(s) 100, 311
MnlI CCTC 3 cut(s) 84, 114, 351
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
NdeII GATC 1 cut(s) 53
NlaIII CATG 1 cut(s) 358
PagI TCATGA 1 cut(s) 354
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PstI CTGCAG 2 cut(s) 47, 179
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 289
SetI ASST 2 cut(s) 171, 362
SfcI CTRYAG 3 cut(s) 43, 93, 175
Sse9I AATT 2 cut(s) 100, 311
SspMI CTAG 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 223
TasI AATT 2 cut(s) 100, 311
TfiI GAWTC 1 cut(s) 230
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 3 cut(s) 176, 260, 324
XapI RAATTY 1 cut(s) 100
XspI CTAG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.