Rroxscaffold_3G00243230

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
35773534 .. 35774976
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243230.1

Sequence Viewer

Length: 1443 bp
ATGGTGACTTTTCTTTCAAAGTTTCAGAGAGCTGTAAGCGCCTACTGCACAAGTAGTGTCTATCCAATTAGACAGTATGGATTCAAATGCTCCATGCATTCATTGGTAGAAATCACCTCAAGAAAATCCATCAAACCATCATCTCCAACTCCTCATCACAAAAGATCTCTCAAACTCTCTCTTTTGGACCAACTTCTTCCTCCTACCGTATATGGAACCATCCTGTATTTCTATACCCCTACCACCAACCACTGTGATCATGATGTTGCACGTTCAAAAGTTTCTGAGACTACTTCTAAGCGCTTACAAGCTTCTCTATCTGAAACCTTGGTTCACTACTATCCACTCGCTGGCCGTCTCAAAGGCACTGCGTCCATTGAATGCAACGATGAAGGCGCACATTTTGTTGAAGCCCGAGTTAGGTGTCAGCTTTCAGATTTTCTTAAACAACCTGATCCTGAGTTACTTAAAAAATTCATGGCAGAACATGATTCTAAAACTGCTCAGATAGCCTTGGGTACTTGTGTCTTGCTTGTTCAAATAAGTGTTTTCAACTGCGGAGGAATAGTTGTTGCTGTATCCCCTTCACACAAGATTGCAGATGGGATATCCCTCCACACATTTGTACGATTATGGGCTGCTATAAATCGCGGTGAGTACCATCAACTAGTTCTACCGAAGTTTAATGGAGCGACTTTGTTGCCGACTAAAGACTTGTCCACCATGCACAACTTCTTAGGACCAATCCCAACTCAAACTTTAACCACAAGAAGGTTCGTGTTTGATGTGTCAAAGATGGCAAGTCTCAAGGCTGAAATTGGGAGTAGAATCCAAAAGTTCACCCCGACGAACGGACAACTCGTTCTGGCAATCATCTTAAAATGTGCTCTTGCTGCTTCTCATCAATCCAAGCTTGATGGAGATACTACTTCAAGGCTAACAGTATTGTCCCAAATGGTAAACTTGCGCAGAAGAATTGTACCAGAAGTACCCGAAAACGAAATGGGGAACTGGTTTTGGGCGCTTTCCCTGTTATTCAAAGAAAATGAGACAGAAATACACGAGTTGGTGATCAATATGAATAAAGGATTGAAAAACTTCTGCAAGGAGAAAGCAAGCAGATTTAAAGGTGACGACGGATTCTTGGTGGTGTCTGAGTCTATGAGAGAAAAGGCTGATCTTTATAAAGCAGAAAAGGGCATCAACCTTTACAGGACTACAAGTGTGTGCAAGTTCCCTCTGTATGAAATCGATTTTGGGTGGGGAAAACCTACCTGGGTTTCTAGCCCAAGTGAACACAAAAACTTTATTTTGCTGCTGGACACAAAAAGTGGTGATGGTATTGAAGCTTGGGTGACACTTGATCAACAAGAAATGACCATTTTTGAGTGTCACGAGGAGCTCCTTGCATTCAGCTCCGTTAATCCCAGCGTCGTTAATTAG

Protein Analysis

480

Amino Acids

53.87

Weight (kDa)

8.8

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 36 - 468 8.8e-82 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1185
Acc16I TGCGCA 1 cut(s) 968
AccB7I CCANNNNNTGG 1 cut(s) 350
AccII CGCG 1 cut(s) 651
AciI CCGC 2 cut(s) 558, 651
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 1 cut(s) 473
AfaI GTAC 5 cut(s) 520, 627, 659, 981, 990
AfeI AGCGCT 1 cut(s) 302
AfiI CCNNNNNNNGG 4 cut(s) 350, 420, 771, 851
AhlI ACTAGT 1 cut(s) 667
AjnI CCWGG 1 cut(s) 1274
AjuI GAANNNNNNNTTGG 2 cut(s) 1239, 1271
AloI GAACNNNNNNTCC 2 cut(s) 846, 878
AluBI AGCT 7 cut(s) 32, 311, 430, 913, 1349, 1402, 1416
AluI AGCT 7 cut(s) 32, 311, 430, 913, 1349, 1402, 1416
Alw21I GWGCWC 2 cut(s) 889, 1404
Alw26I GTCTC 4 cut(s) 281, 362, 809, 1043
AlwI GGATC 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 414
Aor51HI AGCGCT 1 cut(s) 302
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 3 cut(s) 638, 893, 1315
ApoI RAATTY 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 1097
AspLEI GCGC 5 cut(s) 41, 303, 398, 969, 1024
AspS9I GGNCC 2 cut(s) 187, 740
AsuHPI GGTGA 8 cut(s) 16, 106, 665, 832, 1081, 1142, 1346, 1366
AvaI CYCGRG 1 cut(s) 414
AvaII GGWCC 2 cut(s) 187, 740
BaeI ACNNNNGTAYC 2 cut(s) 510, 543
BanII GRGCYC 1 cut(s) 1404
BauI CACGAG 2 cut(s) 1061, 1394
Bbv12I GWGCWC 2 cut(s) 889, 1404
BbvI GCAGC 3 cut(s) 625, 880, 1302
BccI CCATC 8 cut(s) 137, 145, 227, 596, 669, 790, 911, 1331
BceAI ACGGC 1 cut(s) 339
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BciT130I CCWGG 1 cut(s) 1276
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 3 cut(s) 256, 1071, 1363
BcoDI GTCTC 4 cut(s) 281, 362, 809, 1043
BcuI ACTAGT 1 cut(s) 667
BfaI CTAG 2 cut(s) 668, 1284
BfoI RGCGCY 3 cut(s) 42, 304, 1025
BfuI GTATCC 1 cut(s) 589
BglII AGATCT 1 cut(s) 164
BisI GCNGC 3 cut(s) 639, 894, 1316
BlsI GCNGC 3 cut(s) 640, 895, 1317
Bme1390I CCNGG 1 cut(s) 1276
Bme18I GGWCC 2 cut(s) 187, 740
BmeT110I CYCGRG 1 cut(s) 414
BmgT120I GGNCC 2 cut(s) 187, 740
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 1276
BmsI GCATC 1 cut(s) 1209
BpuEI CTTGAG 2 cut(s) 103, 791
Bsa29I ATCGAT 1 cut(s) 1251
BsaJI CCNNGG 3 cut(s) 327, 513, 1275
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 4 cut(s) 350, 420, 771, 851
Bse1I ACTGG 1 cut(s) 1016
BseBI CCWGG 1 cut(s) 1276
BseCI ATCGAT 1 cut(s) 1251
BseDI CCNNGG 3 cut(s) 327, 513, 1275
BseGI GGATG 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 350, 420, 771, 851
BseMII CTCAG 4 cut(s) 276, 450, 518, 1146
BseNI ACTGG 1 cut(s) 1016
BseRI GAGGAG 2 cut(s) 141, 1412
BseXI GCAGC 3 cut(s) 625, 880, 1302
BseYI CCCAGC 1 cut(s) 1427
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 1 cut(s) 354
BshVI ATCGAT 1 cut(s) 1251
BsiHKAI GWGCWC 2 cut(s) 889, 1404
BsiHKCI CYCGRG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 934
BslI CCNNNNNNNGG 4 cut(s) 350, 420, 771, 851
BsmAI GTCTC 4 cut(s) 281, 362, 809, 1043
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 934
BsmI GAATGC 3 cut(s) 97, 386, 1409
BsnI GGCC 1 cut(s) 354
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 889, 1404
Bsp143I GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
BspACI CCGC 2 cut(s) 558, 651
BspANI GGCC 1 cut(s) 354
BspCNI CTCAG 4 cut(s) 277, 451, 517, 1147
BspDI ATCGAT 1 cut(s) 1251
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 1016
BssECI CCNNGG 3 cut(s) 327, 513, 1275
BssMI GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
BssSI CACGAG 2 cut(s) 1061, 1394
BssT1I CCWWGG 2 cut(s) 327, 513
Bst2BI CACGAG 2 cut(s) 1061, 1394
Bst2UI CCWGG 1 cut(s) 1276
Bst4CI ACNGT 4 cut(s) 75, 208, 254, 943
BstC8I GCNNGC 2 cut(s) 352, 1117
BstDEI CTNAG 6 cut(s) 285, 297, 459, 504, 736, 1155
BstF5I GGATG 1 cut(s) 219
BstFNI CGCG 1 cut(s) 651
BstH2I RGCGCY 3 cut(s) 42, 304, 1025
BstHHI GCGC 5 cut(s) 41, 303, 398, 969, 1024
BstKTI GATC 6 cut(s) 167, 259, 457, 1074, 1180, 1366
BstMAI GTCTC 4 cut(s) 281, 362, 809, 1043
BstMBI GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
BstMWI GCNNNNNNNGC 4 cut(s) 38, 45, 509, 893
BstNI CCWGG 1 cut(s) 1276
BstSCI CCNGG 1 cut(s) 1274
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 625, 880, 1302
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 1251
BsuI GTATCC 1 cut(s) 589
BsuRI GGCC 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 1251
BtsCI GGATG 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 366
BtsIMutI CAGTG 2 cut(s) 250, 366
Cac8I GCNNGC 2 cut(s) 352, 1117
CciI TCATGA 1 cut(s) 259
CfoI GCGC 5 cut(s) 41, 303, 398, 969, 1024
Cfr13I GGNCC 2 cut(s) 187, 740
ClaI ATCGAT 1 cut(s) 1251
CseI GACGC 2 cut(s) 360, 1420
Csp6I GTAC 5 cut(s) 519, 626, 658, 980, 989
CviAII CATG 5 cut(s) 94, 260, 478, 488, 724
CviQI GTAC 5 cut(s) 519, 626, 658, 980, 989
DdeI CTNAG 6 cut(s) 285, 297, 459, 504, 736, 1155
DpnI GATC 6 cut(s) 166, 258, 456, 1073, 1179, 1365
DpnII GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
DraI TTTAAA 1 cut(s) 1126
EaeI YGGCCR 1 cut(s) 352
Ecl136II GAGCTC 1 cut(s) 1402
Eco130I CCWWGG 2 cut(s) 327, 513
Eco24I GRGCYC 1 cut(s) 1404
Eco32I GATATC 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 187, 740
Eco47III AGCGCT 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 1402
Eco88I CYCGRG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 1402
EcoRII CCWGG 1 cut(s) 1274
EcoRV GATATC 1 cut(s) 609
EcoT14I CCWWGG 2 cut(s) 327, 513
EcoT22I ATGCAT 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 1404
ErhI CCWWGG 2 cut(s) 327, 513
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 5 cut(s) 97, 263, 481, 491, 727
FaqI GGGAC 1 cut(s) 934
FatI CATG 5 cut(s) 93, 259, 477, 487, 723
FbaI TGATCA 3 cut(s) 256, 1071, 1363
Fnu4HI GCNGC 3 cut(s) 639, 894, 1316
FokI GGATG 1 cut(s) 206
FriOI GRGCYC 1 cut(s) 1404
Fsp4HI GCNGC 3 cut(s) 639, 894, 1316
FspBI CTAG 2 cut(s) 668, 1284
FspI TGCGCA 1 cut(s) 968
GlaI GCGC 5 cut(s) 40, 302, 397, 968, 1023
GluI GCNGC 3 cut(s) 639, 894, 1316
GsaI CCCAGC 1 cut(s) 1431
HaeII RGCGCY 3 cut(s) 42, 304, 1025
HaeIII GGCC 1 cut(s) 354
HgaI GACGC 2 cut(s) 360, 1420
HhaI GCGC 5 cut(s) 41, 303, 398, 969, 1024
Hin1II CATG 5 cut(s) 97, 263, 481, 491, 727
Hin6I GCGC 5 cut(s) 39, 301, 396, 967, 1022
HinP1I GCGC 5 cut(s) 39, 301, 396, 967, 1022
HindIII AAGCTT 3 cut(s) 309, 911, 1347
HinfI GANTC 5 cut(s) 81, 491, 828, 1140, 1157
HphI GGTGA 8 cut(s) 16, 106, 665, 832, 1081, 1142, 1346, 1366
Hpy166II GTNNAC 5 cut(s) 334, 720, 840, 961, 1295
Hpy188I TCNGA 6 cut(s) 27, 286, 322, 436, 507, 1156
Hpy188III TCNNGA 4 cut(s) 120, 260, 458, 1394
Hpy8I GTNNAC 5 cut(s) 334, 720, 840, 961, 1295
Hpy99I CGWCG 3 cut(s) 850, 1139, 1436
HpyAV CCTTC 3 cut(s) 386, 594, 765
HpyCH4III ACNGT 4 cut(s) 75, 208, 254, 943
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 9 cut(s) 48, 97, 269, 384, 599, 727, 1104, 1230, 1409
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 45, 509, 893
HpyF3I CTNAG 6 cut(s) 285, 297, 459, 504, 736, 1155
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 5 cut(s) 97, 263, 481, 491, 727
HspAI GCGC 5 cut(s) 39, 301, 396, 967, 1022
Ksp22I TGATCA 3 cut(s) 256, 1071, 1363
Kzo9I GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
LmnI GCTCC 5 cut(s) 95, 689, 1399, 1407, 1421
Lsp1109I GCAGC 3 cut(s) 625, 880, 1302
LweI GCATC 1 cut(s) 1209
MaeI CTAG 2 cut(s) 668, 1284
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 5 cut(s) 4, 462, 1130, 1354, 1391
MalI GATC 6 cut(s) 166, 258, 456, 1073, 1179, 1365
MboI GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
MboII GAAGA 2 cut(s) 188, 984
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 889, 1404
MluCI AATT 5 cut(s) 66, 473, 816, 975, 1438
MlyI GAGTC 1 cut(s) 1166
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 7 cut(s) 127, 162, 210, 554, 623, 1248, 1390
Mph1103I ATGCAT 1 cut(s) 99
MroXI GAANNNNTTC 1 cut(s) 1097
MseI TTAA 8 cut(s) 444, 468, 684, 761, 878, 1125, 1422, 1437
MspR9I CCNGG 1 cut(s) 1276
Mva1269I GAATGC 3 cut(s) 97, 386, 1409
MvaI CCWGG 1 cut(s) 1276
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 4 cut(s) 38, 45, 509, 893
NdeII GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
NlaIII CATG 5 cut(s) 97, 263, 481, 491, 727
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 4 cut(s) 4, 1130, 1354, 1391
NsbI TGCGCA 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 99
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 858
PctI GAATGC 3 cut(s) 97, 386, 1409
PdmI GAANNNNTTC 1 cut(s) 1097
PfeI GAWTC 4 cut(s) 81, 491, 828, 1140
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 3 cut(s) 640, 895, 1317
PleI GAGTC 1 cut(s) 1165
PpsI GAGTC 1 cut(s) 1165
PsiI TTATAA 1 cut(s) 1185
Psp124BI GAGCTC 1 cut(s) 1404
Psp6I CCWGG 1 cut(s) 1274
PspFI CCCAGC 1 cut(s) 1427
PspGI CCWGG 1 cut(s) 1274
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 187, 740
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 5 cut(s) 520, 627, 659, 981, 990
RsaNI GTAC 5 cut(s) 519, 626, 658, 980, 989
SacI GAGCTC 1 cut(s) 1404
SaqAI TTAA 8 cut(s) 444, 468, 684, 761, 878, 1125, 1422, 1437
SatI GCNGC 3 cut(s) 639, 894, 1316
Sau3AI GATC 6 cut(s) 164, 256, 454, 1071, 1177, 1363
Sau96I GGNCC 2 cut(s) 187, 740
SchI GAGTC 1 cut(s) 1166
ScrFI CCNGG 1 cut(s) 1276
SduI GDGCHC 2 cut(s) 889, 1404
SfaNI GCATC 1 cut(s) 1209
SinI GGWCC 2 cut(s) 187, 740
SmlI CTYRAG 2 cut(s) 118, 806
SmoI CTYRAG 2 cut(s) 118, 806
SpeI ACTAGT 1 cut(s) 667
Sse9I AATT 5 cut(s) 66, 473, 816, 975, 1438
SsiI CCGC 2 cut(s) 558, 651
SspMI CTAG 2 cut(s) 668, 1284
SstI GAGCTC 1 cut(s) 1404
StyD4I CCNGG 1 cut(s) 1274
StyI CCWWGG 2 cut(s) 327, 513
TaaI ACNGT 4 cut(s) 75, 208, 254, 943
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 1251
TasI AATT 5 cut(s) 66, 473, 816, 975, 1438
TfiI GAWTC 4 cut(s) 81, 491, 828, 1140
Tru1I TTAA 8 cut(s) 444, 468, 684, 761, 878, 1125, 1422, 1437
Tru9I TTAA 8 cut(s) 444, 468, 684, 761, 878, 1125, 1422, 1437
TscAI CASTG 2 cut(s) 257, 373
TseFI GTSAC 4 cut(s) 4, 1130, 1354, 1391
TseI GCWGC 3 cut(s) 638, 893, 1315
Tsp45I GTSAC 4 cut(s) 4, 1130, 1354, 1391
TspDTI ATGAA 5 cut(s) 90, 405, 466, 1094, 1260
TspGWI ACGGA 3 cut(s) 867, 1152, 1408
TspRI CASTG 2 cut(s) 257, 373
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 187, 740
XapI RAATTY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 1097
XspI CTAG 2 cut(s) 668, 1284
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.