Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00174

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

15784 .. 16968

Gene Structure 1185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTGAAGCATGCACCCATCCACTGGTAAAAATCACCTCGAGGAAGTTGATTAAACCCTCATTTCCAACTCCTCATCACCAAAGAAATCTCCAGCTCTCTTTTCTGGACCAACTGCTCGATCCCGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTCTCCAAATCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCCTCCGTTCACTGCAACGACGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACTGCCGGCTCTCGGATTTACTTAAAGTTCCTGAGCATAAGTTGCTTAACGACCTTATCCCCGAGTTTGAGCCTAAAACAGTTCAGTTAGCGTTGGGTTCAGTTGTTTTAATTGTTCAAGTGAGTCTTTTCAACTGTGAAGGAATAGCTGTTGCTGCGTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTATACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGCTACCGGAGTTTAACGGAGCATCTGTGCTGCCTCCCAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGATGTCACAAAGATTGCAAGTCTCAAGGCCAAAATCGGAGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCGGAGACTACTTCAAGCACAAATGTGTTGTCCCAAATTGTAAGTTTCCGCAACAGAATAGTCCCCGCGGTAGCACCAAATGTCATGGGTAATTGGTTTTGGTCGGTTCGAGTGGTATTCAAACAAAACGAGACAGAACTACAAGAGTTGGTTGCTAAAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTCCGAGTCACTTAGAGAGAGGGGTGAGTCTTTAAGAGCACAAAGGGGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGCTCCCCGTATATGAAATTGATTTTGGTTGGGGGAAACCAACTTGGGTCACTAGCCAAAGCAACCACAAGAATCTATTTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

377

Amino Acids

41.47

Weight (kDa)

9.56

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	10 - 300	3.9e-42	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	40
AccB7I	CCANNNNNTGG	2 cut(s)	25, 194
AccII	CGCG	1 cut(s)	800
AciI	CCGC	6 cut(s)	126, 210, 781, 798, 800, 929
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	1035
AfiI	CCNNNNNNNGG	3 cut(s)	25, 194, 277
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	5 cut(s)	383, 397, 747, 853, 940
AhlI	ACTAGT	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AleI	CACNNNNGTG	1 cut(s)	755
AluBI	AGCT	5 cut(s)	97, 147, 242, 413, 1050
AluI	AGCT	5 cut(s)	97, 147, 242, 413, 1050
Alw21I	GWGCWC	3 cut(s)	244, 709, 1006
Alw26I	GTCTC	3 cut(s)	650, 731, 857
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	3 cut(s)	40, 258, 326
AoxI	GGCC	3 cut(s)	196, 255, 651
ApeKI	GCWGC	5 cut(s)	212, 419, 482, 544, 713
ApoI	RAATTY	1 cut(s)	464
ArsI	GACNNNNNNTTYG	2 cut(s)	746, 778
AseI	ATTAAT	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	109, 256
AsuC2I	CCSGG	1 cut(s)	959
AsuHPI	GGTGA	4 cut(s)	28, 71, 509, 1001
AvaI	CYCGRG	3 cut(s)	40, 258, 326
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	3 cut(s)	244, 709, 1006
BbvI	GCAGC	5 cut(s)	199, 406, 494, 531, 700
BccI	CCATC	2 cut(s)	27, 944
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BcnI	CCSGG	1 cut(s)	959
BcoDI	GTCTC	3 cut(s)	650, 731, 857
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	2 cut(s)	512, 1100
BisI	GCNGC	5 cut(s)	213, 420, 483, 545, 714
BlsI	GCNGC	5 cut(s)	214, 421, 484, 546, 715
Bme1390I	CCNGG	1 cut(s)	959
Bme18I	GGWCC	1 cut(s)	109
BmeT110I	CYCGRG	3 cut(s)	40, 258, 326
BmgT120I	GGNCC	2 cut(s)	109, 256
BmrFI	CCNGG	1 cut(s)	959
BmsI	GCATC	4 cut(s)	164, 436, 545, 1025
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	2 cut(s)	272, 632
BpuMI	CCSGG	1 cut(s)	959
BsaJI	CCNNGG	1 cut(s)	798
BsaWI	WCCGGW	1 cut(s)	520
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 194, 277
Bse118I	RCCGGY	2 cut(s)	270, 449
Bse1I	ACTGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	25, 194, 277
BseMII	CTCAG	2 cut(s)	288, 712
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	5 cut(s)	199, 406, 494, 531, 700
Bsh1236I	CGCG	1 cut(s)	800
BshFI	GGCC	3 cut(s)	198, 257, 653
BsiHKAI	GWGCWC	3 cut(s)	244, 709, 1006
BsiHKCI	CYCGRG	3 cut(s)	40, 258, 326
BsiSI	CCGG	5 cut(s)	271, 450, 521, 734, 958
BslFI	GGGAC	3 cut(s)	409, 748, 779
BslI	CCNNNNNNNGG	3 cut(s)	25, 194, 277
BsmAI	GTCTC	3 cut(s)	650, 731, 857
BsmFI	GGGAC	3 cut(s)	409, 748, 779
BsnI	GGCC	3 cut(s)	198, 257, 653
BsoBI	CYCGRG	3 cut(s)	40, 258, 326
Bsp1286I	GDGCHC	3 cut(s)	244, 709, 1006
Bsp143I	GATC	3 cut(s)	121, 438, 505
BspACI	CCGC	6 cut(s)	126, 210, 781, 798, 800, 929
BspANI	GGCC	3 cut(s)	198, 257, 653
BspCNI	CTCAG	2 cut(s)	289, 711
BspFNI	CGCG	1 cut(s)	800
BspPI	GGATC	1 cut(s)	116
BsrFI	RCCGGY	2 cut(s)	270, 449
BsrI	ACTGG	1 cut(s)	30
BssAI	RCCGGY	2 cut(s)	270, 449
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	3 cut(s)	121, 438, 505
Bst4CI	ACNGT	3 cut(s)	136, 346, 401
Bst6I	CTCTTC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	7 cut(s)	13, 149, 153, 196, 272, 451, 1048
BstDEI	CTNAG	3 cut(s)	297, 698, 977
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	455
BstKTI	GATC	3 cut(s)	124, 441, 508
BstMAI	GTCTC	3 cut(s)	650, 731, 857
BstMBI	GATC	3 cut(s)	121, 438, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	307, 419, 713
BstNSI	RCATGY	2 cut(s)	15, 674
BstSCI	CCNGG	1 cut(s)	957
BstUI	CGCG	1 cut(s)	800
BstV1I	GCAGC	5 cut(s)	199, 406, 494, 531, 700
BstXI	CCANNNNNNTGG	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	198, 257, 653
BtgI	CCRYGG	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	23, 132, 223
Cac8I	GCNNGC	7 cut(s)	13, 149, 153, 196, 272, 451, 1048
CfoI	GCGC	1 cut(s)	455
Cfr10I	RCCGGY	2 cut(s)	270, 449
Cfr13I	GGNCC	2 cut(s)	109, 256
Cfr42I	CCGCGG	1 cut(s)	801
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	1034
CviAII	CATG	4 cut(s)	12, 477, 671, 817
CviQI	GTAC	1 cut(s)	1034
DdeI	CTNAG	3 cut(s)	297, 698, 977
DpnI	GATC	3 cut(s)	123, 440, 507
DpnII	GATC	3 cut(s)	121, 438, 505
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	944
Ecl136II	GAGCTC	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	27
Eco88I	CYCGRG	3 cut(s)	40, 258, 326
EcoICRI	GAGCTC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	244
FaeI	CATG	4 cut(s)	15, 480, 674, 820
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	3 cut(s)	409, 748, 779
FatI	CATG	4 cut(s)	11, 476, 670, 816
FauI	CCCGC	2 cut(s)	133, 805
Fnu4HI	GCNGC	5 cut(s)	213, 420, 483, 545, 714
FokI	GGATG	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	5 cut(s)	213, 420, 483, 545, 714
FspBI	CTAG	2 cut(s)	512, 1100
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	5 cut(s)	213, 420, 483, 545, 714
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	198, 257, 653
HapII	CCGG	5 cut(s)	271, 450, 521, 734, 958
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	1 cut(s)	455
Hin1II	CATG	4 cut(s)	15, 480, 674, 820
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HincII	GTYRAC	2 cut(s)	265, 603
HindII	GTYRAC	2 cut(s)	265, 603
HinfI	GANTC	7 cut(s)	388, 500, 936, 954, 971, 992, 1119
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	5 cut(s)	271, 450, 521, 734, 958
HphI	GGTGA	4 cut(s)	28, 71, 509, 1001
Hpy166II	GTNNAC	3 cut(s)	223, 265, 603
Hpy188I	TCNGA	7 cut(s)	142, 280, 443, 505, 662, 701, 970
Hpy188III	TCNNGA	4 cut(s)	107, 251, 296, 1131
Hpy8I	GTNNAC	3 cut(s)	223, 265, 603
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	230, 398, 919
HpyCH4III	ACNGT	3 cut(s)	136, 346, 401
HpyCH4V	TGCA	6 cut(s)	15, 151, 228, 641, 1016, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	307, 419, 713
HpyF3I	CTNAG	3 cut(s)	297, 698, 977
Hsp92II	CATG	4 cut(s)	15, 480, 674, 820
HspAI	GCGC	1 cut(s)	453
KroI	GCCGGC	2 cut(s)	270, 449
KroNI	GCCGGC	2 cut(s)	272, 451
KspAI	GTTAAC	1 cut(s)	265
KspI	CCGCGG	1 cut(s)	801
Kzo9I	GATC	3 cut(s)	121, 438, 505
LmnI	GCTCC	3 cut(s)	239, 533, 1055
Lsp1109I	GCAGC	5 cut(s)	199, 406, 494, 531, 700
LweI	GCATC	4 cut(s)	164, 436, 545, 1025
MaeI	CTAG	2 cut(s)	512, 1100
MaeIII	GTNAC	5 cut(s)	561, 628, 904, 972, 1095
MalI	GATC	3 cut(s)	123, 440, 507
MboI	GATC	3 cut(s)	121, 438, 505
MboII	GAAGA	2 cut(s)	172, 959
MhlI	GDGCHC	3 cut(s)	244, 709, 1006
MluCI	AATT	7 cut(s)	375, 464, 557, 690, 768, 823, 1064
MlyI	GAGTC	3 cut(s)	397, 980, 1001
MmeI	TCCRAC	1 cut(s)	92
MroNI	GCCGGC	2 cut(s)	270, 449
MseI	TTAA	8 cut(s)	54, 264, 288, 312, 374, 528, 584, 998
MslI	CAYNNNNRTG	2 cut(s)	495, 755
MspA1I	CMGCKG	2 cut(s)	212, 800
MspI	CCGG	5 cut(s)	271, 450, 521, 734, 958
MspR9I	CCNGG	1 cut(s)	959
MvnI	CGCG	1 cut(s)	800
MwoI	GCNNNNNNNGC	3 cut(s)	307, 419, 713
NaeI	GCCGGC	2 cut(s)	272, 451
NciI	CCSGG	1 cut(s)	959
NdeII	GATC	3 cut(s)	121, 438, 505
NgoMIV	GCCGGC	2 cut(s)	270, 449
NlaIII	CATG	4 cut(s)	15, 480, 674, 820
NmuCI	GTSAC	4 cut(s)	561, 628, 972, 1095
NspI	RCATGY	2 cut(s)	15, 674
OliI	CACNNNNGTG	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	15
PaeR7I	CTCGAG	1 cut(s)	40
PciI	ACATGT	1 cut(s)	670
PdiI	GCCGGC	2 cut(s)	272, 451
PfeI	GAWTC	4 cut(s)	500, 936, 954, 1119
PflMI	CCANNNNNTGG	2 cut(s)	25, 194
PkrI	GCNGC	5 cut(s)	214, 421, 484, 546, 715
PleI	GAGTC	3 cut(s)	396, 979, 1000
PpsI	GAGTC	3 cut(s)	396, 979, 1000
PscI	ACATGT	1 cut(s)	670
PshBI	ATTAAT	1 cut(s)	584
Psp124BI	GAGCTC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	109, 256
PspXI	VCTCGAGB	1 cut(s)	40
RsaI	GTAC	1 cut(s)	1035
RsaNI	GTAC	1 cut(s)	1034
RseI	CAYNNNNRTG	2 cut(s)	495, 755
SacI	GAGCTC	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	801
SaqAI	TTAA	8 cut(s)	54, 264, 288, 312, 374, 528, 584, 998
SatI	GCNGC	5 cut(s)	213, 420, 483, 545, 714
Sau3AI	GATC	3 cut(s)	121, 438, 505
Sau96I	GGNCC	2 cut(s)	109, 256
SchI	GAGTC	3 cut(s)	397, 980, 1001
ScrFI	CCNGG	1 cut(s)	959
SduI	GDGCHC	3 cut(s)	244, 709, 1006
SetI	ASST	8 cut(s)	41, 99, 149, 244, 321, 415, 617, 1052
SfaNI	GCATC	4 cut(s)	164, 436, 545, 1025
Sfr274I	CTCGAG	1 cut(s)	40
Sfr303I	CCGCGG	1 cut(s)	801
SgrBI	CCGCGG	1 cut(s)	801
SinI	GGWCC	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	495, 755
SmlI	CTYRAG	3 cut(s)	40, 251, 647
SmoI	CTYRAG	3 cut(s)	40, 251, 647
SpeI	ACTAGT	1 cut(s)	511
SphI	GCATGC	1 cut(s)	15
Sse9I	AATT	7 cut(s)	375, 464, 557, 690, 768, 823, 1064
SsiI	CCGC	6 cut(s)	126, 210, 781, 798, 800, 929
SspMI	CTAG	2 cut(s)	512, 1100
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	957
TaaI	ACNGT	3 cut(s)	136, 346, 401
TaqI	TCGA	4 cut(s)	41, 120, 728, 841
TasI	AATT	7 cut(s)	375, 464, 557, 690, 768, 823, 1064
TfiI	GAWTC	4 cut(s)	500, 936, 954, 1119
Tru1I	TTAA	8 cut(s)	54, 264, 288, 312, 374, 528, 584, 998
Tru9I	TTAA	8 cut(s)	54, 264, 288, 312, 374, 528, 584, 998
TscAI	CASTG	3 cut(s)	30, 139, 230
TseFI	GTSAC	4 cut(s)	561, 628, 972, 1095
TseI	GCWGC	5 cut(s)	212, 419, 482, 544, 713
Tsp45I	GTSAC	4 cut(s)	561, 628, 972, 1095
TspDTI	ATGAA	1 cut(s)	1076
TspGWI	ACGGA	2 cut(s)	208, 546
TspRI	CASTG	3 cut(s)	30, 139, 230
Van91I	CCANNNNNTGG	2 cut(s)	25, 194
VpaK11BI	GGWCC	1 cut(s)	109
VspI	ATTAAT	1 cut(s)	584
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	15, 674
XhoI	CTCGAG	1 cut(s)	40
XspI	CTAG	2 cut(s)	512, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.