Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

27295644 .. 27296045

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATGTTACACTTTCGAAAGTTTTCGAGACTACTTCTAAGCGCTTGCAAGCTTCTCTATCCTAAAAACTTGGTTCACTTCTATCCACTTGCTAGCTGTCTCAAAGGTACTGTGTCCATCGAGTGCAACAATGAAGGGGTATATTTTGTTGAAGCCCAGGTTAAGTGTCAGCTGTTAGGTTTTCTTAAACAACGTGATCCTAAGTTATTTAACCAATTCATGGCAAAACATAATTCTAAAACTGCTCAGTTAGCCTTGGGTACTTGTGTCTTGCTTGTTCAAATCAGTGTTTTCAACTGCGGAGGAATAGTTGTTGCTGTATCCCCTTTACATAAGATTGCAGATGGAACATCCCTCCACACATTTGTACGCTTCTGGGCAGCTATAAATCGCGGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

133

Amino Acids

14.9

Weight (kDa)

9.54

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	23 - 133	9e-29	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	220
AccII	CGCG	1 cut(s)	393
AciI	CCGC	2 cut(s)	300, 393
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	3 cut(s)	109, 262, 369
AfeI	AGCGCT	1 cut(s)	43
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	3 cut(s)	152, 281, 295
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	4 cut(s)	52, 96, 172, 383
AluI	AGCT	4 cut(s)	52, 96, 172, 383
Alw26I	GTCTC	2 cut(s)	22, 104
AlwI	GGATC	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	16
AsuNHI	GCTAGC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	252, 285
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	2 cut(s)	125, 338
BciT130I	CCWGG	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	22, 104
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	158
BmtI	GCTAGC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	156, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	2 cut(s)	156, 255
BseGI	GGATG	1 cut(s)	350
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	2 cut(s)	22, 104
Bsp119I	TTCGAA	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	300, 393
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	393
BspOI	GCTAGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	156, 255
BssMI	GATC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	3 cut(s)	46, 50, 94
BstDEI	CTNAG	3 cut(s)	38, 201, 246
BstF5I	GGATG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	22, 104
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	46, 50, 94
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	108, 261, 368
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	6 cut(s)	52, 96, 155, 172, 254, 383
CviKI_1	RGCY	6 cut(s)	52, 96, 155, 172, 254, 383
CviQI	GTAC	3 cut(s)	108, 261, 368
DdeI	CTNAG	3 cut(s)	38, 201, 246
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	223
FaiI	YATR	5 cut(s)	142, 221, 231, 333, 386
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	45
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	48, 126, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	3 cut(s)	38, 201, 246
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	196
LpnPI	CCDG	3 cut(s)	143, 170, 361
Lsp1109I	GCAGC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MluCI	AATT	2 cut(s)	215, 232
MnlI	CCTC	2 cut(s)	296, 365
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	3 cut(s)	162, 186, 210
MspA1I	CMGCKG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	196
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	16
PdmI	GAANNNNTTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	3 cut(s)	109, 262, 369
RsaNI	GTAC	3 cut(s)	108, 261, 368
SaqAI	TTAA	3 cut(s)	162, 186, 210
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	8 cut(s)	54, 98, 109, 162, 174, 181, 196, 385
SfuI	TTCGAA	1 cut(s)	16
Sse9I	AATT	2 cut(s)	215, 232
SsiI	CCGC	2 cut(s)	300, 393
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	156
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	112
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	16, 26, 120
TasI	AATT	2 cut(s)	215, 232
Tru1I	TTAA	3 cut(s)	162, 186, 210
Tru9I	TTAA	3 cut(s)	162, 186, 210
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	147, 208
TspRI	CASTG	1 cut(s)	292
Van91I	CCANNNNNTGG	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.