RchiOBHm_Chr3g0487971

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000722
Physical Location & Seq
Reverse (-)
35447115 .. 35448445
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45238

Sequence Viewer

Length: 1263 bp
ATGACCCATCCACTGGTAAAAATCATCTCGAGGAAGATGATTAAACCCTCATCTCCAACTCCTCATCACCAAAGAAATCTCCAGCTCTCTTTTCTGGACCAACTGCTGCCTCCTACGTTATACCCATCTATCATATTTTTCTACTCTTCCCCTACTAGCGATCCCGCTTCCACTGTTTCAGAGAGCTTGCATGCATCTCTCTCCAAATCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCCTCCGTTCACTGCAACGATGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACTGCCAGCTCTCGGATTTACTTAAAGTTCCTGAGCATAAGTTGCTTAACAACCTTATCCCCGATCTTTTCAACTGTGGAGGAATAGCTGTTGCTGCGTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTATACAAACATGGGCAGCCATACATCGTGGTGAATCCGACCAACTAGTGCTACCGGAGTTTAACGGAGCATCTGTGCTGCCTCCCAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGACGTTCGTGTTTGATGTCACAAAGATTGCAAGTCTCAAGGCCAAAATCGGAGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCAAAGCCGGAGACTACTTCAAGCACAAATGTGTTGTCTCAAATTGTAAGTTTCCGCAACAGAATAGTCCCCGCGGTAGCACCAAATGTCATGGGTAATTGGTTTTGGTCGGTTCAAGTGGTATTCAAACAAAACGAGACAGAACTACAAGAGTCGGTTGCTAAAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGGACAGATTCAAAGGCCAAGATGGATTCCGGGTGGTGTCCGAGTCACTTAGAGAGAGGGGTGAGTTCTTTAAGAGCACAAAGGGGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGCTCCCCGTATATGAAATTGATTTTGGTTGGCGGAAACCAACTTGGGTCACTAGCCAAAGCAACCACAAGAATCTATTTCTCCTGATCGACACAAAACATGGAGATGGCATCGAAGTGTGGGTGACACTGGATGAAGAAGAAATGGCTATATTTGAGAGTGAAGAGGAGCTCCTTTCATTTGCTTGTGCAAACCCTAGTGCAATTGTTAATCATCAATCTCACTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

420

Amino Acids

46.8

Weight (kDa)

8.75

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 400 8.8e-65 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 13, 233
AccII CGCG 1 cut(s) 779
AciI CCGC 7 cut(s) 165, 249, 760, 777, 779, 908, 1060
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 1 cut(s) 1015
AfiI CCNNNNNNNGG 3 cut(s) 13, 233, 316
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 5 cut(s) 376, 726, 821, 832, 919
AhlI ACTAGT 1 cut(s) 490
AjuI GAANNNNNNNTTGG 2 cut(s) 1035, 1067
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 7 cut(s) 85, 186, 281, 313, 392, 1030, 1198
AluI AGCT 7 cut(s) 85, 186, 281, 313, 392, 1030, 1198
Alw21I GWGCWC 4 cut(s) 283, 688, 986, 1200
Alw26I GTCTC 4 cut(s) 629, 710, 747, 836
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 2 cut(s) 28, 297
AoxI GGCC 4 cut(s) 235, 294, 630, 922
ApeKI GCWGC 6 cut(s) 106, 251, 398, 461, 523, 692
ApoI RAATTY 1 cut(s) 443
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
AseI ATTAAT 1 cut(s) 563
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 97, 295
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 4 cut(s) 59, 488, 980, 1162
AvaI CYCGRG 2 cut(s) 28, 297
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 2 cut(s) 283, 1200
Bbv12I GWGCWC 4 cut(s) 283, 688, 986, 1200
BbvI GCAGC 6 cut(s) 93, 238, 385, 473, 510, 679
BccI CCATC 4 cut(s) 15, 133, 923, 1127
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 4 cut(s) 629, 710, 747, 836
BcuI ACTAGT 1 cut(s) 490
BfaI CTAG 4 cut(s) 156, 491, 1080, 1224
BisI GCNGC 6 cut(s) 107, 252, 399, 462, 524, 693
BlsI GCNGC 6 cut(s) 108, 253, 400, 463, 525, 694
Bme1390I CCNGG 1 cut(s) 938
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 28, 297
BmgT120I GGNCC 2 cut(s) 97, 295
BmrFI CCNGG 1 cut(s) 938
BmsI GCATC 5 cut(s) 203, 415, 524, 1005, 1146
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 311, 611
BpuMI CCSGG 1 cut(s) 938
BsaJI CCNNGG 1 cut(s) 777
BsaWI WCCGGW 1 cut(s) 499
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 233, 316
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 18, 1161
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 2 cut(s) 7, 1165
BseLI CCNNNNNNNGG 3 cut(s) 13, 233, 316
BseMII CTCAG 2 cut(s) 327, 691
BseNI ACTGG 2 cut(s) 18, 1161
BseRI GAGGAG 2 cut(s) 51, 1208
BseXI GCAGC 6 cut(s) 93, 238, 385, 473, 510, 679
Bsh1236I CGCG 1 cut(s) 779
BshFI GGCC 4 cut(s) 237, 296, 632, 924
BsiHKAI GWGCWC 4 cut(s) 283, 688, 986, 1200
BsiHKCI CYCGRG 2 cut(s) 28, 297
BsiSI CCGG 4 cut(s) 429, 500, 713, 937
BslFI GGGAC 2 cut(s) 388, 758
BslI CCNNNNNNNGG 3 cut(s) 13, 233, 316
BsmAI GTCTC 4 cut(s) 629, 710, 747, 836
BsmFI GGGAC 2 cut(s) 388, 758
BsnI GGCC 4 cut(s) 237, 296, 632, 924
BsoBI CYCGRG 2 cut(s) 28, 297
Bsp1286I GDGCHC 4 cut(s) 283, 688, 986, 1200
Bsp143I GATC 4 cut(s) 160, 367, 417, 1113
BspACI CCGC 7 cut(s) 165, 249, 760, 777, 779, 908, 1060
BspANI GGCC 4 cut(s) 237, 296, 632, 924
BspCNI CTCAG 2 cut(s) 328, 690
BspFNI CGCG 1 cut(s) 779
BspPI GGATC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 2 cut(s) 18, 1161
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 4 cut(s) 160, 367, 417, 1113
Bst4CI ACNGT 2 cut(s) 175, 380
Bst6I CTCTTC 3 cut(s) 151, 224, 1185
BstAPI GCANNNNNTGC 1 cut(s) 346
BstC8I GCNNGC 6 cut(s) 188, 192, 235, 311, 430, 1028
BstDEI CTNAG 3 cut(s) 336, 677, 956
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 2 cut(s) 7, 1165
BstFNI CGCG 1 cut(s) 779
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 4 cut(s) 163, 370, 420, 1116
BstMAI GTCTC 4 cut(s) 629, 710, 747, 836
BstMBI GATC 4 cut(s) 160, 367, 417, 1113
BstMWI GCNNNNNNNGC 3 cut(s) 346, 398, 692
BstNSI RCATGY 2 cut(s) 194, 653
BstSCI CCNGG 1 cut(s) 936
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 6 cut(s) 93, 238, 385, 473, 510, 679
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 4 cut(s) 237, 296, 632, 924
BtgI CCRYGG 1 cut(s) 777
BtsCI GGATG 2 cut(s) 7, 1165
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 4 cut(s) 11, 171, 262, 1154
Cac8I GCNNGC 6 cut(s) 188, 192, 235, 311, 430, 1028
CfoI GCGC 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 97, 295
Cfr42I CCGCGG 1 cut(s) 780
CseI GACGC 1 cut(s) 390
Csp6I GTAC 1 cut(s) 1014
CviAII CATG 5 cut(s) 191, 456, 650, 796, 1127
CviQI GTAC 1 cut(s) 1014
DdeI CTNAG 3 cut(s) 336, 677, 956
DpnI GATC 4 cut(s) 162, 369, 419, 1115
DpnII GATC 4 cut(s) 160, 367, 417, 1113
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 3 cut(s) 151, 224, 1185
EarI CTCTTC 3 cut(s) 151, 224, 1185
EciI GGCGGA 2 cut(s) 923, 1075
Ecl136II GAGCTC 2 cut(s) 281, 1198
Eco24I GRGCYC 2 cut(s) 283, 1200
Eco47I GGWCC 1 cut(s) 97
Eco53kI GAGCTC 2 cut(s) 281, 1198
Eco88I CYCGRG 2 cut(s) 28, 297
EcoICRI GAGCTC 2 cut(s) 281, 1198
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 2 cut(s) 283, 1200
FaeI CATG 5 cut(s) 194, 459, 653, 799, 1130
FaqI GGGAC 2 cut(s) 388, 758
FatI CATG 5 cut(s) 190, 455, 649, 795, 1126
FauI CCCGC 2 cut(s) 172, 784
Fnu4HI GCNGC 6 cut(s) 107, 252, 399, 462, 524, 693
FokI GGATG 1 cut(s) 1172
FriOI GRGCYC 2 cut(s) 283, 1200
Fsp4HI GCNGC 6 cut(s) 107, 252, 399, 462, 524, 693
FspBI CTAG 4 cut(s) 156, 491, 1080, 1224
GlaI GCGC 1 cut(s) 433
GluI GCNGC 6 cut(s) 107, 252, 399, 462, 524, 693
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 4 cut(s) 237, 296, 632, 924
HapII CCGG 4 cut(s) 429, 500, 713, 937
HgaI GACGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 434
Hin1II CATG 5 cut(s) 194, 459, 653, 799, 1130
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HincII GTYRAC 2 cut(s) 304, 582
HindII GTYRAC 2 cut(s) 304, 582
HinfI GANTC 6 cut(s) 479, 857, 915, 933, 950, 1099
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 4 cut(s) 429, 500, 713, 937
HphI GGTGA 4 cut(s) 59, 488, 980, 1162
Hpy166II GTNNAC 3 cut(s) 262, 304, 582
Hpy188I TCNGA 7 cut(s) 181, 319, 422, 484, 641, 680, 949
Hpy188III TCNNGA 5 cut(s) 28, 95, 290, 335, 1111
Hpy8I GTNNAC 3 cut(s) 262, 304, 582
HpyAV CCTTC 2 cut(s) 269, 898
HpyCH4III ACNGT 2 cut(s) 175, 380
HpyCH4IV ACGT 2 cut(s) 116, 593
HpyCH4V TGCA 8 cut(s) 190, 194, 267, 620, 996, 1026, 1217, 1229
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 398, 692
HpyF3I CTNAG 3 cut(s) 336, 677, 956
HpySE526I ACGT 2 cut(s) 116, 593
Hsp92II CATG 5 cut(s) 194, 459, 653, 799, 1130
HspAI GCGC 1 cut(s) 432
KroI GCCGGC 1 cut(s) 428
KroNI GCCGGC 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 304
KspI CCGCGG 1 cut(s) 780
Kzo9I GATC 4 cut(s) 160, 367, 417, 1113
LmnI GCTCC 5 cut(s) 278, 512, 1035, 1195, 1203
Lsp1109I GCAGC 6 cut(s) 93, 238, 385, 473, 510, 679
LweI GCATC 5 cut(s) 203, 415, 524, 1005, 1146
MaeI CTAG 4 cut(s) 156, 491, 1080, 1224
MaeII ACGT 2 cut(s) 116, 593
MaeIII GTNAC 6 cut(s) 540, 607, 883, 951, 1075, 1150
MalI GATC 4 cut(s) 162, 369, 419, 1115
MboI GATC 4 cut(s) 160, 367, 417, 1113
MboII GAAGA 6 cut(s) 46, 138, 211, 1175, 1178, 1202
MfeI CAATTG 1 cut(s) 1230
MhlI GDGCHC 4 cut(s) 283, 688, 986, 1200
MluCI AATT 7 cut(s) 443, 536, 669, 747, 802, 1044, 1230
MlyI GAGTC 2 cut(s) 866, 959
MmeI TCCRAC 2 cut(s) 80, 507
Mph1103I ATGCAT 1 cut(s) 196
MroNI GCCGGC 1 cut(s) 428
MseI TTAA 8 cut(s) 42, 303, 327, 351, 507, 563, 978, 1236
MslI CAYNNNNRTG 4 cut(s) 474, 734, 1131, 1142
MspA1I CMGCKG 2 cut(s) 251, 779
MspI CCGG 4 cut(s) 429, 500, 713, 937
MspR9I CCNGG 1 cut(s) 938
MunI CAATTG 1 cut(s) 1230
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 3 cut(s) 346, 398, 692
NaeI GCCGGC 1 cut(s) 430
NciI CCSGG 1 cut(s) 938
NdeII GATC 4 cut(s) 160, 367, 417, 1113
NgoMIV GCCGGC 1 cut(s) 428
NlaIII CATG 5 cut(s) 194, 459, 653, 799, 1130
NmuCI GTSAC 5 cut(s) 540, 607, 951, 1075, 1150
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 2 cut(s) 194, 653
OliI CACNNNNGTG 1 cut(s) 734
PaeI GCATGC 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 28
PciI ACATGT 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 430
PfeI GAWTC 4 cut(s) 479, 915, 933, 1099
PflMI CCANNNNNTGG 2 cut(s) 13, 233
PkrI GCNGC 6 cut(s) 108, 253, 400, 463, 525, 694
PleI GAGTC 2 cut(s) 865, 958
PpsI GAGTC 2 cut(s) 865, 958
PscI ACATGT 1 cut(s) 649
PshBI ATTAAT 1 cut(s) 563
Psp124BI GAGCTC 2 cut(s) 283, 1200
PspPI GGNCC 2 cut(s) 97, 295
RsaI GTAC 1 cut(s) 1015
RsaNI GTAC 1 cut(s) 1014
RseI CAYNNNNRTG 4 cut(s) 474, 734, 1131, 1142
SacI GAGCTC 2 cut(s) 283, 1200
SacII CCGCGG 1 cut(s) 780
SaqAI TTAA 8 cut(s) 42, 303, 327, 351, 507, 563, 978, 1236
SatI GCNGC 6 cut(s) 107, 252, 399, 462, 524, 693
Sau3AI GATC 4 cut(s) 160, 367, 417, 1113
Sau96I GGNCC 2 cut(s) 97, 295
SchI GAGTC 2 cut(s) 866, 959
ScrFI CCNGG 1 cut(s) 938
SduI GDGCHC 4 cut(s) 283, 688, 986, 1200
SfaNI GCATC 5 cut(s) 203, 415, 524, 1005, 1146
Sfr274I CTCGAG 1 cut(s) 28
Sfr303I CCGCGG 1 cut(s) 780
SgrBI CCGCGG 1 cut(s) 780
SinI GGWCC 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 28
SmiMI CAYNNNNRTG 4 cut(s) 474, 734, 1131, 1142
SmlI CTYRAG 3 cut(s) 28, 290, 626
SmoI CTYRAG 3 cut(s) 28, 290, 626
SpeI ACTAGT 1 cut(s) 490
SphI GCATGC 1 cut(s) 194
Sse9I AATT 7 cut(s) 443, 536, 669, 747, 802, 1044, 1230
SsiI CCGC 7 cut(s) 165, 249, 760, 777, 779, 908, 1060
SspMI CTAG 4 cut(s) 156, 491, 1080, 1224
SstI GAGCTC 2 cut(s) 283, 1200
StyD4I CCNGG 1 cut(s) 936
TaaI ACNGT 2 cut(s) 175, 380
TaiI ACGT 2 cut(s) 119, 596
TaqI TCGA 3 cut(s) 29, 1116, 1140
TasI AATT 7 cut(s) 443, 536, 669, 747, 802, 1044, 1230
TfiI GAWTC 4 cut(s) 479, 915, 933, 1099
Tru1I TTAA 8 cut(s) 42, 303, 327, 351, 507, 563, 978, 1236
Tru9I TTAA 8 cut(s) 42, 303, 327, 351, 507, 563, 978, 1236
TscAI CASTG 4 cut(s) 18, 178, 269, 1161
TseFI GTSAC 5 cut(s) 540, 607, 951, 1075, 1150
TseI GCWGC 6 cut(s) 106, 251, 398, 461, 523, 692
Tsp45I GTSAC 5 cut(s) 540, 607, 951, 1075, 1150
TspDTI ATGAA 4 cut(s) 288, 1056, 1176, 1194
TspGWI ACGGA 2 cut(s) 247, 525
TspRI CASTG 4 cut(s) 18, 178, 269, 1161
Van91I CCANNNNNTGG 2 cut(s) 13, 233
VpaK11BI GGWCC 1 cut(s) 97
VspI ATTAAT 1 cut(s) 563
XapI RAATTY 1 cut(s) 443
XceI RCATGY 2 cut(s) 194, 653
XhoI CTCGAG 1 cut(s) 28
XspI CTAG 4 cut(s) 156, 491, 1080, 1224
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.