Rroxscaffold_6G00394400

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000722
Physical Location & Seq
Forward (+)
14894099 .. 14896380
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394400.1

Sequence Viewer

Length: 1131 bp
ATGGTTGCATTTAGCCGCAGTCAAATTCTAACCTTACAAACATCGCTATCCAAGGCATTGGTTTACTTTTATCCCCTGGCCGGCCGACTAAATGGCCCTGCTTCCATCGACTGCAATGATGAAGGGGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTCTCGGACTTGCTTAAACTTCCTGAACACAGCTTACTCAACAACCTCATCCCGGAGTTTGATCCTCAAACCGCCCATTCAGCCTTAGGTTCTGCAGTTTTGCTTGTCCAAATGAGTCGTTTTAACTGCGGAGGAATCGGCCTTGCTGTGTCGCTGTCGCACAAGATCGCAGATGCAACCTCATGTCAAACATTTGTACAAGCATGGGCTGCCATACATCGTGATCATAAATATGATAGTCAACTAATGGTACCACAGTTTAATGGAGGATCTCTGTTGCCGGCTAAAGACTCCTTCCTAAACAACTTAGGGTTACCAAAGTATCAAAGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATTGCCAATCTCAAGGCTAAAATTGGAGGTACAAACGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCCAAGCCGGAGACGAGTTCAAAAGTATGGGTTCGGTGGTGCAGGAAAATGCCATGGGAAACTGGTTTTGGCCGCTTCAAGTGGTATACAAGCCAAACGAGACGGAACTACATGAGTTGGTGGCAAAATATGAGGAGAGAACTAACAGACTTCTACAACGAGAAGGCTGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTCAAAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGGTGCATCAGTGTTTATAGGGCCACAAGTTTGTGCAAGCTCCCTGTATATGAAATTGATTTTGGGTGGGGGAAACCAACATGGGTTACTTGCCAAAGCGACCAGAAGAACATATTTGTGTTGATTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTCGATATAGAAGAAATGGCGATATTTGAGAGTGATGAGGAGCTCCTTTCATTCGCTTCTGTAAACCCCAGTGTTAGTGTCAATCATCACTCTCGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

376

Amino Acids

42.43

Weight (kDa)

8.78

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 152 7.7e-37 Transferase family
Transferase PF02458 293 - 358 6e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 409
AccI GTMKAC 1 cut(s) 701
AciI CCGC 4 cut(s) 16, 231, 288, 688
AclWI GGATC 3 cut(s) 215, 436, 1019
AcoI YGGCCR 3 cut(s) 78, 82, 685
AcsI RAATTY 2 cut(s) 24, 788
AfaI GTAC 5 cut(s) 357, 411, 556, 564, 1126
AfiI CCNNNNNNNGG 3 cut(s) 80, 163, 211
AgsI TTSAA 5 cut(s) 589, 636, 694, 793, 832
AjnI CCWGG 1 cut(s) 75
AjuI GAANNNNNNNTTGG 4 cut(s) 666, 698, 909, 941
AloI GAACNNNNNNTCC 2 cut(s) 791, 823
AluBI AGCT 5 cut(s) 160, 192, 847, 904, 1072
AluI AGCT 5 cut(s) 160, 192, 847, 904, 1072
Alw21I GWGCWC 2 cut(s) 598, 1074
Alw26I GTCTC 2 cut(s) 620, 709
AlwI GGATC 3 cut(s) 215, 436, 1019
AoxI GGCC 7 cut(s) 78, 82, 94, 141, 298, 685, 885
ApeKI GCWGC 2 cut(s) 368, 602
ApoI RAATTY 2 cut(s) 24, 788
Asp718I GGTACC 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 95, 142, 885
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 826, 1036
AxyI CCTNAGG 1 cut(s) 244
BaeI ACNNNNGTAYC 6 cut(s) 401, 434, 464, 497, 546, 579
BanI GGYRCC 1 cut(s) 409
BanII GRGCYC 1 cut(s) 1074
BauI CACGAG 1 cut(s) 597
Bbv12I GWGCWC 2 cut(s) 598, 1074
BbvI GCAGC 2 cut(s) 355, 589
BccI CCATC 3 cut(s) 113, 797, 1001
BciT130I CCWGG 1 cut(s) 77
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 620, 709
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 4 cut(s) 16, 369, 603, 688
BlsI GCNGC 4 cut(s) 17, 370, 604, 689
Bme1390I CCNGG 2 cut(s) 77, 212
BmgT120I GGNCC 3 cut(s) 95, 142, 885
BmiI GGNNCC 1 cut(s) 411
BmrFI CCNGG 2 cut(s) 77, 212
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 2 cut(s) 322, 879
BmuI ACTGGG 1 cut(s) 1092
BpuEI CTTGAG 2 cut(s) 158, 521
BpuMI CCSGG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 1128
BsaJI CCNNGG 4 cut(s) 51, 75, 668, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 163, 211
Bse118I RCCGGY 2 cut(s) 80, 439
Bse1I ACTGG 2 cut(s) 682, 1098
Bse21I CCTNAGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 4 cut(s) 51, 75, 668, 861
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 80, 163, 211
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 813
BseNI ACTGG 2 cut(s) 682, 1098
BseRI GAGGAG 2 cut(s) 763, 1082
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 355, 589
BsgI GTGCAG 1 cut(s) 676
Bsh1285I CGRYCG 1 cut(s) 85
BshFI GGCC 7 cut(s) 80, 84, 96, 143, 300, 687, 887
BshNI GGYRCC 1 cut(s) 409
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 2 cut(s) 598, 1074
BsiSI CCGG 4 cut(s) 81, 212, 440, 623
BsiWI CGTACG 1 cut(s) 1124
BslI CCNNNNNNNGG 3 cut(s) 80, 163, 211
BsmAI GTCTC 2 cut(s) 620, 709
BsmBI CGTCTC 2 cut(s) 620, 709
BsnI GGCC 7 cut(s) 80, 84, 96, 143, 300, 687, 887
Bsp1286I GDGCHC 2 cut(s) 598, 1074
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 5 cut(s) 220, 324, 382, 428, 1011
Bsp19I CCATGG 1 cut(s) 668
BspACI CCGC 4 cut(s) 16, 231, 288, 688
BspANI GGCC 7 cut(s) 80, 84, 96, 143, 300, 687, 887
BspCNI CTCAG 1 cut(s) 814
BspLI GGNNCC 1 cut(s) 411
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 3 cut(s) 215, 436, 1019
BspT107I GGYRCC 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 2 cut(s) 80, 439
BsrGI TGTACA 1 cut(s) 355
BsrI ACTGG 2 cut(s) 682, 1098
BssAI RCCGGY 2 cut(s) 80, 439
BssECI CCNNGG 4 cut(s) 51, 75, 668, 861
BssMI GATC 5 cut(s) 220, 324, 382, 428, 1011
BssNAI GTATAC 1 cut(s) 702
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 3 cut(s) 51, 668, 861
Bst1107I GTATAC 1 cut(s) 702
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 1128
BstC8I GCNNGC 6 cut(s) 82, 158, 441, 784, 845, 902
BstDEI CTNAG 3 cut(s) 244, 466, 822
BstDSI CCRYGG 1 cut(s) 668
BstEII GGTNACC 1 cut(s) 471
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 5 cut(s) 223, 327, 385, 431, 1014
BstMAI GTCTC 2 cut(s) 620, 709
BstMBI GATC 5 cut(s) 220, 324, 382, 428, 1011
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 239, 368, 602
BstNI CCWGG 1 cut(s) 77
BstPI GGTNACC 1 cut(s) 471
BstSCI CCNGG 2 cut(s) 75, 210
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 355, 589
BstX2I RGATCY 1 cut(s) 428
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 428
BstZ17I GTATAC 1 cut(s) 702
BstZI CGGCCG 1 cut(s) 82
Bsu36I CCTNAGG 1 cut(s) 244
BsuRI GGCC 7 cut(s) 80, 84, 96, 143, 300, 687, 887
BtgI CCRYGG 1 cut(s) 668
BtgZI GCGATG 2 cut(s) 27, 1020
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 880, 1105
Cac8I GCNNGC 6 cut(s) 82, 158, 441, 784, 845, 902
Cfr10I RCCGGY 2 cut(s) 80, 439
Cfr13I GGNCC 3 cut(s) 95, 142, 885
Csp6I GTAC 5 cut(s) 356, 410, 555, 563, 1125
CviAII CATG 6 cut(s) 342, 363, 669, 727, 945, 1020
CviQI GTAC 5 cut(s) 356, 410, 555, 563, 1125
DdeI CTNAG 3 cut(s) 244, 466, 822
DpnI GATC 5 cut(s) 222, 326, 384, 430, 1013
DpnII GATC 5 cut(s) 220, 324, 382, 428, 1011
EaeI YGGCCR 3 cut(s) 78, 82, 685
EagI CGGCCG 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 1072
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 3 cut(s) 51, 668, 861
Eco24I GRGCYC 1 cut(s) 1074
Eco52I CGGCCG 1 cut(s) 82
Eco53kI GAGCTC 1 cut(s) 1072
Eco81I CCTNAGG 1 cut(s) 244
Eco91I GGTNACC 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 1072
EcoO65I GGTNACC 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 3 cut(s) 51, 668, 861
EcoT38I GRGCYC 1 cut(s) 1074
ErhI CCWWGG 3 cut(s) 51, 668, 861
Esp3I CGTCTC 2 cut(s) 620, 709
FaeI CATG 6 cut(s) 345, 366, 672, 730, 948, 1023
FatI CATG 6 cut(s) 341, 362, 668, 726, 944, 1019
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 4 cut(s) 16, 369, 603, 688
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 1074
FseI GGCCGGCC 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 16, 369, 603, 688
FspBI CTAG 1 cut(s) 498
GluI GCNGC 4 cut(s) 16, 369, 603, 688
HaeIII GGCC 7 cut(s) 80, 84, 96, 143, 300, 687, 887
HapII CCGG 4 cut(s) 81, 212, 440, 623
Hin1II CATG 6 cut(s) 345, 366, 672, 730, 948, 1023
HincII GTYRAC 2 cut(s) 151, 401
HindII GTYRAC 2 cut(s) 151, 401
HinfI GANTC 4 cut(s) 274, 294, 449, 824
HpaII CCGG 4 cut(s) 81, 212, 440, 623
HphI GGTGA 2 cut(s) 826, 1036
Hpy166II GTNNAC 5 cut(s) 64, 151, 401, 702, 1093
Hpy188I TCNGA 2 cut(s) 166, 823
Hpy188III TCNNGA 5 cut(s) 137, 182, 380, 520, 586
Hpy8I GTNNAC 5 cut(s) 64, 151, 401, 702, 1093
HpyAV CCTTC 3 cut(s) 116, 463, 772
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4IV ACGT 3 cut(s) 561, 1000, 1127
HpyCH4V TGCA 7 cut(s) 8, 114, 254, 335, 657, 870, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 368, 602
HpyF3I CTNAG 3 cut(s) 244, 466, 822
HpySE526I ACGT 3 cut(s) 561, 1000, 1127
Hsp92II CATG 6 cut(s) 345, 366, 672, 730, 948, 1023
KpnI GGTACC 1 cut(s) 413
KroI GCCGGC 2 cut(s) 80, 439
KroNI GCCGGC 2 cut(s) 82, 441
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 5 cut(s) 220, 324, 382, 428, 1011
LmnI GCTCC 3 cut(s) 909, 1069, 1077
Lsp1109I GCAGC 2 cut(s) 355, 589
LweI GCATC 2 cut(s) 322, 879
MaeI CTAG 1 cut(s) 498
MaeII ACGT 3 cut(s) 561, 1000, 1127
MaeIII GTNAC 4 cut(s) 471, 517, 949, 1024
MalI GATC 5 cut(s) 222, 326, 384, 430, 1013
MboI GATC 5 cut(s) 220, 324, 382, 428, 1011
MboII GAAGA 4 cut(s) 535, 812, 982, 1052
MflI RGATCY 1 cut(s) 428
MhlI GDGCHC 2 cut(s) 598, 1074
MluCI AATT 4 cut(s) 24, 546, 788, 918
MlyI GAGTC 3 cut(s) 283, 443, 833
MroNI GCCGGC 2 cut(s) 80, 439
MseI TTAA 4 cut(s) 174, 282, 420, 491
MslI CAYNNNNRTG 2 cut(s) 390, 980
MspI CCGG 4 cut(s) 81, 212, 440, 623
MspR9I CCNGG 2 cut(s) 77, 212
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 239, 368, 602
NaeI GCCGGC 2 cut(s) 82, 441
NciI CCSGG 1 cut(s) 212
NcoI CCATGG 1 cut(s) 668
NdeII GATC 5 cut(s) 220, 324, 382, 428, 1011
NgoMIV GCCGGC 2 cut(s) 80, 439
NlaIII CATG 6 cut(s) 345, 366, 672, 730, 948, 1023
NlaIV GGNNCC 1 cut(s) 411
NmuCI GTSAC 2 cut(s) 517, 1024
PdiI GCCGGC 2 cut(s) 82, 441
PfeI GAWTC 1 cut(s) 294
Pfl23II CGTACG 1 cut(s) 1124
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 4 cut(s) 17, 370, 604, 689
PleI GAGTC 3 cut(s) 282, 443, 832
PpsI GAGTC 3 cut(s) 282, 443, 832
Ppu21I YACGTR 1 cut(s) 1128
Psp124BI GAGCTC 1 cut(s) 1074
Psp6I CCWGG 1 cut(s) 75
PspEI GGTNACC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 75
PspLI CGTACG 1 cut(s) 1124
PspN4I GGNNCC 1 cut(s) 411
PspPI GGNCC 3 cut(s) 95, 142, 885
PsrI GAACNNNNNNTAC 2 cut(s) 177, 209
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 428
RigI GGCCGGCC 1 cut(s) 84
RsaI GTAC 5 cut(s) 357, 411, 556, 564, 1126
RsaNI GTAC 5 cut(s) 356, 410, 555, 563, 1125
RseI CAYNNNNRTG 2 cut(s) 390, 980
SacI GAGCTC 1 cut(s) 1074
SaqAI TTAA 4 cut(s) 174, 282, 420, 491
SatI GCNGC 4 cut(s) 16, 369, 603, 688
Sau3AI GATC 5 cut(s) 220, 324, 382, 428, 1011
Sau96I GGNCC 3 cut(s) 95, 142, 885
SchI GAGTC 3 cut(s) 283, 443, 833
ScrFI CCNGG 2 cut(s) 77, 212
SduI GDGCHC 2 cut(s) 598, 1074
SfaNI GCATC 2 cut(s) 322, 879
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 2 cut(s) 390, 980
SmlI CTYRAG 2 cut(s) 137, 536
SmoI CTYRAG 2 cut(s) 137, 536
Sse9I AATT 4 cut(s) 24, 546, 788, 918
SsiI CCGC 4 cut(s) 16, 231, 288, 688
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 1 cut(s) 1074
StyD4I CCNGG 2 cut(s) 75, 210
StyI CCWWGG 3 cut(s) 51, 668, 861
TaaI ACNGT 1 cut(s) 417
TaiI ACGT 3 cut(s) 564, 1003, 1130
TaqI TCGA 3 cut(s) 108, 1014, 1032
TasI AATT 4 cut(s) 24, 546, 788, 918
TatI WGTACW 1 cut(s) 355
TauI GCSGC 2 cut(s) 18, 690
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 4 cut(s) 174, 282, 420, 491
Tru9I TTAA 4 cut(s) 174, 282, 420, 491
TscAI CASTG 2 cut(s) 880, 1105
TseFI GTSAC 2 cut(s) 517, 1024
TseI GCWGC 2 cut(s) 368, 602
Tsp45I GTSAC 2 cut(s) 517, 1024
TspDTI ATGAA 3 cut(s) 135, 930, 1068
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 2 cut(s) 880, 1105
XapI RAATTY 2 cut(s) 24, 788
XmiI GTMKAC 1 cut(s) 701
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.