Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

7104546 .. 7105913

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTGAAAGAAATGAAGGTCGAGATCATTTCAAGAAAAACAATTAGGCCATCCTCCCCAACTCCTCATCATCACAAAAACTTCAAGCTCTCTCTTTTGGACCAAAGATATAGTCCTAATTTGTATGGCAATATGATCTTCTTCTACTCGTCTACCAGCAACTATGATCATACTTATGGTGACTTCAATCCCCATGCATTGAAAATGTCAAGCCACCTTCAGAAGTCGTTGTCCAAAACCTTGGTTCATTTCTATCCACTTGCCGGGCGGCTCAAAGACGCTGCTACCATTGAGTGCAATGACCAAGGGGTTTATTTTGTAGAAGCCCGAATGGATTGCCACCTCTTGAATTTTCTCTCCCAACCTGATTCCACCTTATTCCAGCACTTTATTCCCACCTCCAGTGCTGAAAACGAAGATGTTATTGTTCTGCTTGTTCAACTCACTCTCTTTAACTGTGGAGGAATTGCTATTGCAGTCTCTCTTTTACACAAGATCGCGGACGCTTCATCCTTGTGCACTTTTGTCCAAAGTTGGACGGCAGCCAGTACTGCTCTTGATCAATCAGAATTCATTGGTCATGACCAGAGATTAGGTCAAGTGCTTCCTTTGTTCATTGGATCGACGTTGCTGCCGCCTTCAGAGATGTTGATCACACGCACCGTGGACATCCCAGACCCACTTCAAAATTTCACCACTAGGCGTTTTGTGTTCAGCACCTCAAAGATGGCCAGTCTCAAGGCAAAAGCAGCTATTACAACTAACAACCCTACAAATGTGGAACTAGTATCTGCAGTTGTGGTCAAATGTGCTATTGCTGCTGCACAGTCCATATCAACATCGTCATCAAGTCCATCAGTGTTGTTCCACGCCGTGAACTTGCGCAAAAGAATGGTCTCTCCACTGCCGGCCAATACTGTAGGTAATCTCGTTTGGGCGTTTCCAGTGCTGATTGAAGAAAGTGATATAAAATTACATGAGGTTGTTGTCAAGTTGAGGAAAGGCTTAACGGACTTCTGCAACGACAAGGCTAATAGATTTAAAGGCGAAGATGGTTTCACCGTGGTTTCCGAATATCATAAAAAGGAGGTTGAATTCAGCTCAAGAGGAGTTAATATTTTTCGTTGTACAAGTTTGTGCAAATTTCCAATATATGATATGGATTTTGGGTGGGGGAAACCCACTTGGGTTGCTACTTCTATGGGCTTTAAAAACTTCATAGTTTTGATTGATAGTAAACTTGGTGAAAATATTGAAGCGTGGGTGACACTGGCAGAACAAGAGATGGCTATATTTCAAAGGGATGAGATGCTTCTTTCATTTGCTTCCTTAAACCCCAGTGCAGCTGTCCATGAAAGCCGTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

456

Amino Acids

50.76

Weight (kDa)

7.24

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 436	2.3e-79	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	152
AccII	CGCG	1 cut(s)	500
AciI	CCGC	3 cut(s)	268, 500, 635
AclWI	GGATC	1 cut(s)	628
AcoI	YGGCCR	2 cut(s)	729, 909
AcsI	RAATTY	5 cut(s)	349, 569, 688, 1094, 1142
AcuI	CTGAAG	2 cut(s)	203, 624
AdeI	CACNNNGTG	1 cut(s)	874
AfaI	GTAC	2 cut(s)	550, 1129
AfiI	CCNNNNNNNGG	1 cut(s)	263
AhlI	ACTAGT	1 cut(s)	784
AluBI	AGCT	4 cut(s)	88, 752, 1101, 1346
AluI	AGCT	4 cut(s)	88, 752, 1101, 1346
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	3 cut(s)	484, 740, 901
Alw44I	GTGCAC	1 cut(s)	517
AlwI	GGATC	1 cut(s)	628
AoxI	GGCC	3 cut(s)	47, 729, 909
ApaLI	GTGCAC	1 cut(s)	517
ApeKI	GCWGC	7 cut(s)	281, 542, 631, 749, 818, 821, 1343
ApoI	RAATTY	5 cut(s)	349, 569, 688, 1094, 1142
ArsI	GACNNNNNNTTYG	4 cut(s)	97, 129, 879, 911
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	6 cut(s)	16, 191, 685, 1051, 1256, 1276
AvaII	GGWCC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	521
BalI	TGGCCA	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	7 cut(s)	268, 554, 618, 761, 805, 808, 1355
BccI	CCATC	5 cut(s)	58, 721, 862, 1046, 1279
BceAI	ACGGC	3 cut(s)	555, 857, 1344
BcgI	CGANNNNNNTGC	4 cut(s)	318, 352, 613, 647
BclI	TGATCA	3 cut(s)	166, 559, 651
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	484, 740, 901
BcuI	ACTAGT	1 cut(s)	784
BfaI	CTAG	2 cut(s)	699, 785
BfmI	CTRYAG	2 cut(s)	792, 918
BisI	GCNGC	9 cut(s)	269, 282, 543, 632, 635, 750, 819, 822, 1344
BlsI	GCNGC	9 cut(s)	270, 283, 544, 633, 636, 751, 820, 823, 1345
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	1332
BmsI	GCATC	1 cut(s)	1299
BmuI	ACTGGG	1 cut(s)	1332
BpmI	CTGGAG	1 cut(s)	385
BpuEI	CTTGAG	2 cut(s)	722, 1087
BpuMI	CCSGG	1 cut(s)	265
BsaBI	GATNNNNATC	1 cut(s)	650
BsaI	GGTCTC	1 cut(s)	901
BsaJI	CCNNGG	4 cut(s)	240, 304, 663, 1062
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	907
Bse1I	ACTGG	6 cut(s)	402, 546, 732, 944, 1275, 1338
Bse3DI	GCAATG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	650
BseDI	CCNNGG	4 cut(s)	240, 304, 663, 1062
BseGI	GGATG	4 cut(s)	50, 509, 669, 1309
BseJI	GATNNNNATC	1 cut(s)	650
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	304
BseNI	ACTGG	6 cut(s)	402, 546, 732, 944, 1275, 1338
BseRI	GAGGAG	2 cut(s)	54, 1122
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	7 cut(s)	268, 554, 618, 761, 805, 808, 1355
BsgI	GTGCAG	2 cut(s)	807, 1362
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	3 cut(s)	49, 731, 911
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	264, 908
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	3 cut(s)	484, 740, 901
BsnI	GGCC	3 cut(s)	49, 731, 911
Bso31I	GGTCTC	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	1127
Bsp143I	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
BspACI	CCGC	3 cut(s)	268, 500, 635
BspANI	GGCC	3 cut(s)	49, 731, 911
BspFNI	CGCG	1 cut(s)	500
BspHI	TCATGA	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	796
BspPI	GGATC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	907
BsrGI	TGTACA	1 cut(s)	1127
BsrI	ACTGG	6 cut(s)	402, 546, 732, 944, 1275, 1338
BssAI	RCCGGY	1 cut(s)	907
BssECI	CCNNGG	4 cut(s)	240, 304, 663, 1062
BssMI	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
BssT1I	CCWWGG	2 cut(s)	240, 304
Bst4CI	ACNGT	5 cut(s)	458, 664, 828, 919, 1063
BstAUI	TGTACA	1 cut(s)	1127
BstC8I	GCNNGC	1 cut(s)	909
BstDSI	CCRYGG	2 cut(s)	663, 1062
BstF5I	GGATG	4 cut(s)	50, 509, 669, 1309
BstFNI	CGCG	1 cut(s)	500
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	7 cut(s)	27, 138, 169, 498, 562, 623, 654
BstMAI	GTCTC	3 cut(s)	484, 740, 901
BstMBI	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 749, 818
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	792, 918
BstSLI	GKGCMC	1 cut(s)	521
BstUI	CGCG	1 cut(s)	500
BstV1I	GCAGC	7 cut(s)	268, 554, 618, 761, 805, 808, 1355
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuRI	GGCC	3 cut(s)	49, 731, 911
BtgI	CCRYGG	2 cut(s)	663, 1062
BtsCI	GGATG	4 cut(s)	50, 509, 669, 1309
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	6 cut(s)	409, 864, 902, 951, 1268, 1345
Cac8I	GCNNGC	1 cut(s)	909
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	885
Cfr10I	RCCGGY	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	100
CseI	GACGC	2 cut(s)	287, 512
Csp6I	GTAC	2 cut(s)	549, 1128
CspCI	CAANNNNNGTGG	2 cut(s)	1171, 1206
CviAII	CATG	4 cut(s)	194, 581, 977, 1352
CviQI	GTAC	2 cut(s)	549, 1128
DpnI	GATC	7 cut(s)	26, 137, 168, 497, 561, 622, 653
DpnII	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
DraI	TTTAAA	2 cut(s)	1042, 1210
DraIII	CACNNNGTG	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	729, 909
Eco130I	CCWWGG	2 cut(s)	240, 304
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	203, 624
EcoRI	GAATTC	2 cut(s)	569, 1094
EcoT14I	CCWWGG	2 cut(s)	240, 304
EcoT22I	ATGCAT	1 cut(s)	199
ErhI	CCWWGG	2 cut(s)	240, 304
FaeI	CATG	4 cut(s)	197, 584, 980, 1355
FatI	CATG	4 cut(s)	193, 580, 976, 1351
FbaI	TGATCA	3 cut(s)	166, 559, 651
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	9 cut(s)	269, 282, 543, 632, 635, 750, 819, 822, 1344
FokI	GGATG	4 cut(s)	37, 496, 656, 1316
Fsp4HI	GCNGC	9 cut(s)	269, 282, 543, 632, 635, 750, 819, 822, 1344
FspBI	CTAG	2 cut(s)	699, 785
FspI	TGCGCA	1 cut(s)	884
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	9 cut(s)	269, 282, 543, 632, 635, 750, 819, 822, 1344
GsuI	CTGGAG	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	49, 731, 911
HapII	CCGG	2 cut(s)	264, 908
HgaI	GACGC	2 cut(s)	287, 512
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	4 cut(s)	197, 584, 980, 1355
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	264, 908
HphI	GGTGA	6 cut(s)	16, 191, 685, 1051, 1256, 1276
Hpy166II	GTNNAC	5 cut(s)	153, 519, 667, 877, 1238
Hpy188I	TCNGA	4 cut(s)	222, 568, 643, 1072
Hpy188III	TCNNGA	6 cut(s)	22, 33, 346, 557, 581, 1104
Hpy8I	GTNNAC	5 cut(s)	153, 519, 667, 877, 1238
Hpy99I	CGWCG	1 cut(s)	628
HpyAV	CCTTC	3 cut(s)	10, 227, 648
HpyCH4III	ACNGT	5 cut(s)	458, 664, 828, 919, 1063
HpyCH4IV	ACGT	1 cut(s)	626
HpyCH4V	TGCA	9 cut(s)	197, 297, 476, 519, 794, 824, 1020, 1140, 1343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 749, 818
HpySE526I	ACGT	1 cut(s)	626
Hsp92II	CATG	4 cut(s)	197, 584, 980, 1355
HspAI	GCGC	1 cut(s)	883
KroI	GCCGGC	1 cut(s)	907
KroNI	GCCGGC	1 cut(s)	909
Ksp22I	TGATCA	3 cut(s)	166, 559, 651
Kzo9I	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
Lsp1109I	GCAGC	7 cut(s)	268, 554, 618, 761, 805, 808, 1355
LweI	GCATC	1 cut(s)	1299
MaeI	CTAG	2 cut(s)	699, 785
MaeII	ACGT	1 cut(s)	626
MaeIII	GTNAC	2 cut(s)	179, 1264
MalI	GATC	7 cut(s)	26, 137, 168, 497, 561, 622, 653
MboI	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
MboII	GAAGA	5 cut(s)	130, 133, 428, 968, 1061
MhlI	GDGCHC	1 cut(s)	521
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	9 cut(s)	42, 118, 349, 465, 569, 688, 971, 1094, 1142
MluNI	TGGCCA	1 cut(s)	731
MmeI	TCCRAC	1 cut(s)	515
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	907
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	6 cut(s)	453, 1007, 1041, 1113, 1209, 1331
MslI	CAYNNNNRTG	2 cut(s)	174, 514
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	1346
MspI	CCGG	2 cut(s)	264, 908
MspR9I	CCNGG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	3 cut(s)	551, 749, 818
NaeI	GCCGGC	1 cut(s)	909
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
NgoMIV	GCCGGC	1 cut(s)	907
NlaIII	CATG	4 cut(s)	197, 584, 980, 1355
NmuCI	GTSAC	2 cut(s)	179, 1264
NsbI	TGCGCA	1 cut(s)	884
NsiI	ATGCAT	1 cut(s)	199
PagI	TCATGA	1 cut(s)	580
PdiI	GCCGGC	1 cut(s)	909
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	9 cut(s)	270, 283, 544, 633, 636, 751, 820, 823, 1345
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	796
PvuII	CAGCTG	1 cut(s)	1346
RsaI	GTAC	2 cut(s)	550, 1129
RsaNI	GTAC	2 cut(s)	549, 1128
RseI	CAYNNNNRTG	2 cut(s)	174, 514
SaqAI	TTAA	6 cut(s)	453, 1007, 1041, 1113, 1209, 1331
SatI	GCNGC	9 cut(s)	269, 282, 543, 632, 635, 750, 819, 822, 1344
Sau3AI	GATC	7 cut(s)	24, 135, 166, 495, 559, 620, 651
Sau96I	GGNCC	1 cut(s)	100
ScaI	AGTACT	1 cut(s)	550
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	1299
SfcI	CTRYAG	2 cut(s)	792, 918
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	174, 514
SmlI	CTYRAG	2 cut(s)	737, 1102
SmoI	CTYRAG	2 cut(s)	737, 1102
SpeI	ACTAGT	1 cut(s)	784
Sse9I	AATT	9 cut(s)	42, 118, 349, 465, 569, 688, 971, 1094, 1142
SsiI	CCGC	3 cut(s)	268, 500, 635
SspI	AATATT	2 cut(s)	1117, 1252
SspMI	CTAG	2 cut(s)	699, 785
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	240, 304
TaaI	ACNGT	5 cut(s)	458, 664, 828, 919, 1063
TaiI	ACGT	1 cut(s)	629
TaqI	TCGA	2 cut(s)	21, 623
TasI	AATT	9 cut(s)	42, 118, 349, 465, 569, 688, 971, 1094, 1142
TatI	WGTACW	2 cut(s)	548, 1127
TauI	GCSGC	2 cut(s)	271, 637
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	6 cut(s)	453, 1007, 1041, 1113, 1209, 1331
Tru9I	TTAA	6 cut(s)	453, 1007, 1041, 1113, 1209, 1331
TscAI	CASTG	6 cut(s)	409, 864, 909, 951, 1275, 1345
TseFI	GTSAC	2 cut(s)	179, 1264
TseI	GCWGC	7 cut(s)	281, 542, 631, 749, 818, 821, 1343
Tsp45I	GTSAC	2 cut(s)	179, 1264
TspDTI	ATGAA	8 cut(s)	29, 236, 498, 562, 604, 1207, 1308, 1368
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	6 cut(s)	409, 864, 909, 951, 1275, 1345
VneI	GTGCAC	1 cut(s)	517
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	5 cut(s)	349, 569, 688, 1094, 1142
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	2 cut(s)	699, 785
ZrmI	AGTACT	1 cut(s)	550
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.