Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

33635969 .. 33637824

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG285200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAATTTCCGTTTCCATTGGAATCTGCTTCCTCAAATGCAGAAGAGATCGATCCCGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTCTCCAAAGCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCCTTCGTTGACTGCAACGACGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACTGCCAGCGCTCGGATTTACTTAAAGTTCCTGAGCATAAGTTGCTTAACAACCTTATCCCCGAGTTTGAGCCTAAAACAGTTCAGTTAGCGTTGGGTTCAGTTGTTTTAATTGTTCAAGTGAGTCTTTTCAACTGTGGAGGAATAGCTGTTGCTGCGTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTACACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGATACCGGAGTTTAATGGAGCATCTGTGCTGCCTCCCAGAGAATTGTCACCCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGGTGTCACAAAGATTGAAAGTCTCAAGACCAAAATTGGAGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCTGAGACTACTTCAAGCACAAATGTGTTGTCCCAAATTGTAAGTTTCCGCAACAGAATAGTCCCCGCGGTACCACCAAATGTCGTGGGTAATTGGTTTTGGTCGGTTCAAGTGGCATTCAAACTAAACGAGACAGAACTACAGAAGTTGGTTGCTAAAATGAGGAAAGGAGTAACAGGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTCCGAGTCACTTAGAGAGAGGGGTGAGTTCTTTAAGAGCACAAAGGTGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGATCCCGGTACATGAAATTGATTTTGTTTGGGGGAAATCAACTTGGGTCACTAGCCAAAGCAACCACAAGAACCTATTTCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

351

Amino Acids

38.32

Weight (kDa)

9.65

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	20 - 296	5.9e-42	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	733
AccB1I	GGYRCC	1 cut(s)	733
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccII	CGCG	1 cut(s)	731
AciI	CCGC	6 cut(s)	57, 141, 712, 729, 731, 850
AclWI	GGATC	2 cut(s)	47, 966
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	2 cut(s)	5, 395
AfaI	GTAC	3 cut(s)	735, 957, 980
AfeI	AGCGCT	1 cut(s)	206
AfiI	CCNNNNNNNGG	2 cut(s)	125, 208
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	7 cut(s)	314, 328, 572, 678, 773, 784, 861
AhlI	ACTAGT	1 cut(s)	442
AleI	CACNNNNGTG	2 cut(s)	686, 931
AluBI	AGCT	4 cut(s)	78, 101, 173, 344
AluI	AGCT	4 cut(s)	78, 101, 173, 344
Alw21I	GWGCWC	3 cut(s)	175, 640, 928
Alw26I	GTCTC	3 cut(s)	581, 662, 788
AlwI	GGATC	2 cut(s)	47, 966
Ama87I	CYCGRG	2 cut(s)	189, 257
Aor51HI	AGCGCT	1 cut(s)	206
AoxI	GGCC	2 cut(s)	127, 186
ApeKI	GCWGC	5 cut(s)	143, 350, 413, 475, 644
ApoI	RAATTY	2 cut(s)	5, 395
ArsI	GACNNNNNNTTYG	2 cut(s)	677, 709
AseI	ATTAAT	1 cut(s)	515
Asp718I	GGTACC	1 cut(s)	733
AspLEI	GCGC	2 cut(s)	207, 386
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	2 cut(s)	880, 976
AsuHPI	GGTGA	3 cut(s)	440, 486, 922
AvaI	CYCGRG	2 cut(s)	189, 257
BaeI	ACNNNNGTAYC	2 cut(s)	440, 473
BanI	GGYRCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	3 cut(s)	175, 640, 928
BbvI	GCAGC	5 cut(s)	130, 337, 425, 462, 631
BccI	CCATC	1 cut(s)	865
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BcnI	CCSGG	2 cut(s)	880, 976
BcoDI	GTCTC	3 cut(s)	581, 662, 788
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	2 cut(s)	443, 1022
BfmI	CTRYAG	1 cut(s)	803
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	5 cut(s)	144, 351, 414, 476, 645
BlsI	GCNGC	5 cut(s)	145, 352, 415, 477, 646
Bme1390I	CCNGG	2 cut(s)	880, 976
BmeT110I	CYCGRG	2 cut(s)	189, 257
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	735
BmrFI	CCNGG	2 cut(s)	880, 976
BmsI	GCATC	4 cut(s)	95, 367, 476, 947
Bpu10I	CCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	203, 563
BpuMI	CCSGG	2 cut(s)	880, 976
Bsa29I	ATCGAT	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	729
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 208
Bse118I	RCCGGY	1 cut(s)	380
BseCI	ATCGAT	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	729
BseLI	CCNNNNNNNGG	2 cut(s)	125, 208
BseMII	CTCAG	3 cut(s)	219, 643, 657
BseXI	GCAGC	5 cut(s)	130, 337, 425, 462, 631
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	2 cut(s)	129, 188
BshNI	GGYRCC	1 cut(s)	733
BshVI	ATCGAT	1 cut(s)	51
BsiHKAI	GWGCWC	3 cut(s)	175, 640, 928
BsiHKCI	CYCGRG	2 cut(s)	189, 257
BsiSI	CCGG	4 cut(s)	381, 452, 879, 976
BslFI	GGGAC	3 cut(s)	340, 679, 710
BslI	CCNNNNNNNGG	2 cut(s)	125, 208
BsmAI	GTCTC	3 cut(s)	581, 662, 788
BsmFI	GGGAC	3 cut(s)	340, 679, 710
BsmI	GAATGC	1 cut(s)	779
BsnI	GGCC	2 cut(s)	129, 188
BsoBI	CYCGRG	2 cut(s)	189, 257
Bsp1286I	GDGCHC	3 cut(s)	175, 640, 928
Bsp143I	GATC	5 cut(s)	48, 52, 369, 436, 971
BspACI	CCGC	6 cut(s)	57, 141, 712, 729, 731, 850
BspANI	GGCC	2 cut(s)	129, 188
BspCNI	CTCAG	3 cut(s)	220, 642, 658
BspDI	ATCGAT	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	731
BspLI	GGNNCC	1 cut(s)	735
BspPI	GGATC	2 cut(s)	47, 966
BspT107I	GGYRCC	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	380
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	5 cut(s)	48, 52, 369, 436, 971
Bst4CI	ACNGT	3 cut(s)	67, 277, 332
Bst6I	CTCTTC	2 cut(s)	39, 116
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	5 cut(s)	80, 84, 127, 203, 382
BstDEI	CTNAG	4 cut(s)	228, 629, 666, 898
BstDSI	CCRYGG	1 cut(s)	729
BstFNI	CGCG	1 cut(s)	731
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	207, 386
BstKTI	GATC	5 cut(s)	51, 55, 372, 439, 974
BstMAI	GTCTC	3 cut(s)	581, 662, 788
BstMBI	GATC	5 cut(s)	48, 52, 369, 436, 971
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 350, 644
BstNSI	RCATGY	1 cut(s)	605
BstSCI	CCNGG	2 cut(s)	878, 974
BstSFI	CTRYAG	1 cut(s)	803
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	5 cut(s)	130, 337, 425, 462, 631
BstX2I	RGATCY	1 cut(s)	971
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	971
Bsu15I	ATCGAT	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	129, 188
BsuTUI	ATCGAT	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	5 cut(s)	80, 84, 127, 203, 382
CfoI	GCGC	2 cut(s)	207, 386
Cfr10I	RCCGGY	1 cut(s)	380
Cfr13I	GGNCC	1 cut(s)	187
Cfr42I	CCGCGG	1 cut(s)	732
ClaI	ATCGAT	1 cut(s)	51
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	734, 956, 979
CspCI	CAANNNNNGTGG	2 cut(s)	729, 764
CviAII	CATG	3 cut(s)	408, 602, 982
CviQI	GTAC	3 cut(s)	734, 956, 979
DdeI	CTNAG	4 cut(s)	228, 629, 666, 898
DpnI	GATC	5 cut(s)	50, 54, 371, 438, 973
DpnII	GATC	5 cut(s)	48, 52, 369, 436, 971
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	2 cut(s)	39, 116
EarI	CTCTTC	2 cut(s)	39, 116
EciI	GGCGGA	1 cut(s)	865
Ecl136II	GAGCTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	173
Eco88I	CYCGRG	2 cut(s)	189, 257
EcoICRI	GAGCTC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	3 cut(s)	411, 605, 985
FaiI	YATR	8 cut(s)	234, 388, 409, 419, 603, 654, 950, 983
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	3 cut(s)	340, 679, 710
FatI	CATG	3 cut(s)	407, 601, 981
FauI	CCCGC	2 cut(s)	64, 736
Fnu4HI	GCNGC	5 cut(s)	144, 351, 414, 476, 645
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	144, 351, 414, 476, 645
FspBI	CTAG	2 cut(s)	443, 1022
GlaI	GCGC	2 cut(s)	206, 385
GluI	GCNGC	5 cut(s)	144, 351, 414, 476, 645
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	129, 188
HapII	CCGG	4 cut(s)	381, 452, 879, 976
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	2 cut(s)	207, 386
Hin1II	CATG	3 cut(s)	411, 605, 985
Hin6I	GCGC	2 cut(s)	205, 384
HinP1I	GCGC	2 cut(s)	205, 384
HincII	GTYRAC	3 cut(s)	154, 196, 534
HindII	GTYRAC	3 cut(s)	154, 196, 534
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	6 cut(s)	23, 319, 431, 857, 875, 892
HpaI	GTTAAC	1 cut(s)	196
HpaII	CCGG	4 cut(s)	381, 452, 879, 976
HphI	GGTGA	3 cut(s)	440, 486, 922
Hpy166II	GTNNAC	3 cut(s)	154, 196, 534
Hpy188I	TCNGA	6 cut(s)	73, 211, 374, 436, 632, 891
Hpy188III	TCNNGA	4 cut(s)	182, 227, 580, 1053
Hpy8I	GTNNAC	3 cut(s)	154, 196, 534
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	157, 161, 840
HpyCH4III	ACNGT	3 cut(s)	67, 277, 332
HpyCH4V	TGCA	5 cut(s)	41, 82, 159, 938, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 350, 644
HpyF3I	CTNAG	4 cut(s)	228, 629, 666, 898
Hsp92II	CATG	3 cut(s)	411, 605, 985
HspAI	GCGC	2 cut(s)	205, 384
KpnI	GGTACC	1 cut(s)	737
KroI	GCCGGC	1 cut(s)	380
KroNI	GCCGGC	1 cut(s)	382
KspAI	GTTAAC	1 cut(s)	196
KspI	CCGCGG	1 cut(s)	732
Kzo9I	GATC	5 cut(s)	48, 52, 369, 436, 971
LmnI	GCTCC	2 cut(s)	170, 464
Lsp1109I	GCAGC	5 cut(s)	130, 337, 425, 462, 631
LweI	GCATC	4 cut(s)	95, 367, 476, 947
MaeI	CTAG	2 cut(s)	443, 1022
MaeIII	GTNAC	5 cut(s)	492, 559, 835, 893, 1017
MalI	GATC	5 cut(s)	50, 54, 371, 438, 973
MboI	GATC	5 cut(s)	48, 52, 369, 436, 971
MboII	GAAGA	3 cut(s)	56, 103, 880
MflI	RGATCY	1 cut(s)	971
MhlI	GDGCHC	3 cut(s)	175, 640, 928
MluCI	AATT	9 cut(s)	5, 306, 395, 488, 588, 621, 699, 754, 986
MlyI	GAGTC	2 cut(s)	328, 901
MnlI	CCTC	9 cut(s)	43, 178, 329, 489, 537, 587, 638, 819, 899
MroNI	GCCGGC	1 cut(s)	380
MseI	TTAA	7 cut(s)	195, 219, 243, 305, 459, 515, 920
MslI	CAYNNNNRTG	4 cut(s)	406, 426, 686, 931
MspA1I	CMGCKG	2 cut(s)	143, 731
MspI	CCGG	4 cut(s)	381, 452, 879, 976
MspR9I	CCNGG	2 cut(s)	880, 976
Mva1269I	GAATGC	1 cut(s)	779
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	3 cut(s)	238, 350, 644
NaeI	GCCGGC	1 cut(s)	382
NciI	CCSGG	2 cut(s)	880, 976
NdeII	GATC	5 cut(s)	48, 52, 369, 436, 971
NgoMIV	GCCGGC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	411, 605, 985
NlaIV	GGNNCC	1 cut(s)	735
NmuCI	GTSAC	4 cut(s)	492, 559, 893, 1017
NspI	RCATGY	1 cut(s)	605
OliI	CACNNNNGTG	2 cut(s)	686, 931
PciI	ACATGT	1 cut(s)	601
PctI	GAATGC	1 cut(s)	779
PdiI	GCCGGC	1 cut(s)	382
PfeI	GAWTC	4 cut(s)	23, 431, 857, 875
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	5 cut(s)	145, 352, 415, 477, 646
PleI	GAGTC	2 cut(s)	327, 900
PpsI	GAGTC	2 cut(s)	327, 900
PscI	ACATGT	1 cut(s)	601
PshBI	ATTAAT	1 cut(s)	515
Psp124BI	GAGCTC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	735
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	971
RsaI	GTAC	3 cut(s)	735, 957, 980
RsaNI	GTAC	3 cut(s)	734, 956, 979
RseI	CAYNNNNRTG	4 cut(s)	406, 426, 686, 931
SacI	GAGCTC	1 cut(s)	175
SacII	CCGCGG	1 cut(s)	732
SaqAI	TTAA	7 cut(s)	195, 219, 243, 305, 459, 515, 920
SatI	GCNGC	5 cut(s)	144, 351, 414, 476, 645
Sau3AI	GATC	5 cut(s)	48, 52, 369, 436, 971
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	2 cut(s)	328, 901
ScrFI	CCNGG	2 cut(s)	880, 976
SduI	GDGCHC	3 cut(s)	175, 640, 928
SetI	ASST	8 cut(s)	80, 103, 175, 252, 346, 548, 935, 1046
SfaNI	GCATC	4 cut(s)	95, 367, 476, 947
SfcI	CTRYAG	1 cut(s)	803
Sfr303I	CCGCGG	1 cut(s)	732
SgrBI	CCGCGG	1 cut(s)	732
SmiMI	CAYNNNNRTG	4 cut(s)	406, 426, 686, 931
SmlI	CTYRAG	2 cut(s)	182, 578
SmoI	CTYRAG	2 cut(s)	182, 578
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	9 cut(s)	5, 306, 395, 488, 588, 621, 699, 754, 986
SsiI	CCGC	6 cut(s)	57, 141, 712, 729, 731, 850
SspMI	CTAG	2 cut(s)	443, 1022
SstI	GAGCTC	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	878, 974
TaaI	ACNGT	3 cut(s)	67, 277, 332
TaqI	TCGA	2 cut(s)	51, 659
TasI	AATT	9 cut(s)	5, 306, 395, 488, 588, 621, 699, 754, 986
TfiI	GAWTC	4 cut(s)	23, 431, 857, 875
Tru1I	TTAA	7 cut(s)	195, 219, 243, 305, 459, 515, 920
Tru9I	TTAA	7 cut(s)	195, 219, 243, 305, 459, 515, 920
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	4 cut(s)	492, 559, 893, 1017
TseI	GCWGC	5 cut(s)	143, 350, 413, 475, 644
Tsp45I	GTSAC	4 cut(s)	492, 559, 893, 1017
TspDTI	ATGAA	1 cut(s)	998
TspRI	CASTG	1 cut(s)	70
Van91I	CCANNNNNTGG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	515
XapI	RAATTY	2 cut(s)	5, 395
XceI	RCATGY	1 cut(s)	605
XspI	CTAG	2 cut(s)	443, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.