Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

44510403 .. 44511727

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAAGCTGGAGATCATCTCAAGGAAACTTGTTAGGCCATCCTCTCCTACTCCTTCTCACCTCAAAACCTTCAAGCTCTCTCTGTTGGACCAAAGAATGCCTTCTAATTTATACGGAAAGATAATTTTATTCTATCCTAACAACAGCAACAACAACAGCGATGATTTAGCTACTTTTGTCTCTGAAAGATCAAACCACCTACAGAAGTCACTATCCAAAACCTTGGTACATTTCTATCCTCTAGCTGGGCGGCTTAAAGACGACATCTCCATTGATTGCAACGATGAAGGAGCTTATTTTATAGAAGCCAAAATCAAATGCAGCTTCTCTGATGTTCTCTCCCAACCAGATCCCAACTTACTCGAACACTTTCTTCCCTTCACTGGTGATCATGAAGCCTTCAATGTCGTTACACTTATTCAACTCACTGTCTTTAACTGTGGTGGAATTGCCATCGGAGCCTGTACGTCACATAAGATTACAGATGCATCATCCAACTTCACTTTTCTAGGGAGCTGGACATCAAATGCTCGTGGTCAAATCGGAGTTCTTCCCAAGTTCATTGAACCATCTCTGATGCCACCTTCAGATACACCAATCAGACCCACTCCTGGCTTTCTTGGAGTTCAAAATTTCACCACAAGGAGATTTGTGTTCAGCCACTCAAAGATGGCCAGTCTCAAGGCGAAATCTAGGAGACCAAGGCCATCGTTGATGTCCCAAGTGGTGAATCTGCGAAATAGAATGGTCCCTTCGCTGCCCGAGAATACGATGGGCAATCTCATTTTTGCATTCAACGTGTTGATCGAAGAAAATAACATAGAATTACCTGAGATGGTTGTCACTATGAGAAAAGGGTTCAAAGACTTTTGCAGTCACAAGGCAAATAGATTCAAAGGTGAAGATGCTTTATCAGTTCTTTCTGAATCTCTTAGAGAAGAGGATGAACTAATTAGTAAGATGGGAGCGAACATCTTTAGGTTTTCAAGTATATGCGGATTTCCAATTTATGATGTGGACTTTGGTTGGGGGAAACCAATTTGGGTTACTATTCGACCTGGATCATTAAAGAATTTATTTACTTTGATTGATGCCAAAGGGGGTGAACATATTGAAGCTTGGGTGAACCTGGAAGAACAAGATATGGATATATTTGAACGTAGTGAGTTGCTTCTTTCATTTGCATCCTTGAATCCTAGTGTAATAACTGCGGGAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

406

Amino Acids

45.45

Weight (kDa)

7.12

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	1 - 201	5.2e-46	Transferase family
Transferase	PF02458	228 - 387	4.3e-21	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	250, 996, 1211
AclWI	GGATC	2 cut(s)	344, 1069
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	2 cut(s)	631, 1072
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	2 cut(s)	228, 466
AfiI	CCNNNNNNNGG	3 cut(s)	245, 383, 611
AflIII	ACRYGT	1 cut(s)	798
AjnI	CCWGG	3 cut(s)	610, 1057, 1128
AluBI	AGCT	9 cut(s)	7, 76, 170, 245, 293, 324, 516, 1118, 1218
AluI	AGCT	9 cut(s)	7, 76, 170, 245, 293, 324, 516, 1118, 1218
Alw26I	GTCTC	3 cut(s)	184, 683, 691
AlwI	GGATC	2 cut(s)	344, 1069
Ama87I	CYCGRG	1 cut(s)	761
AoxI	GGCC	3 cut(s)	35, 672, 704
ApeKI	GCWGC	2 cut(s)	321, 757
ApoI	RAATTY	2 cut(s)	631, 1072
Asp700I	GAANNNNTTC	2 cut(s)	100, 369
AspS9I	GGNCC	2 cut(s)	88, 748
AsuHPI	GGTGA	7 cut(s)	50, 398, 628, 739, 911, 1115, 1135
AvaI	CYCGRG	1 cut(s)	761
AvaII	GGWCC	2 cut(s)	88, 748
BalI	TGGCCA	1 cut(s)	674
BauI	CACGAG	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	333, 744
BccI	CCATC	8 cut(s)	46, 461, 577, 664, 715, 766, 829, 955
BciT130I	CCWGG	3 cut(s)	612, 1059, 1130
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	184, 683, 691
BfaI	CTAG	5 cut(s)	242, 509, 693, 1197, 1219
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	3 cut(s)	251, 322, 758
BlsI	GCNGC	3 cut(s)	252, 323, 759
Bme1390I	CCNGG	3 cut(s)	612, 1059, 1130
Bme18I	GGWCC	2 cut(s)	88, 748
BmeT110I	CYCGRG	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	88, 748
BmiI	GGNNCC	2 cut(s)	460, 750
BmrFI	CCNGG	3 cut(s)	612, 1059, 1130
BmsI	GCATC	6 cut(s)	475, 497, 567, 895, 1081, 1193
BplI	GAGNNNNNCTC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	2 cut(s)	4, 665
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	2 cut(s)	222, 701
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 383, 611
Bse1I	ACTGG	2 cut(s)	388, 675
BseBI	CCWGG	3 cut(s)	612, 1059, 1130
BseDI	CCNNGG	2 cut(s)	222, 701
BseGI	GGATG	4 cut(s)	38, 491, 949, 1184
BseLI	CCNNNNNNNGG	3 cut(s)	245, 383, 611
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	2 cut(s)	388, 675
BseXI	GCAGC	2 cut(s)	333, 744
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	3 cut(s)	37, 674, 706
BsiHKCI	CYCGRG	1 cut(s)	761
BslFI	GGGAC	2 cut(s)	703, 734
BslI	CCNNNNNNNGG	3 cut(s)	245, 383, 611
BsmAI	GTCTC	3 cut(s)	184, 683, 691
BsmFI	GGGAC	2 cut(s)	703, 734
BsmI	GAATGC	2 cut(s)	102, 791
BsnI	GGCC	3 cut(s)	37, 674, 706
Bso31I	GGTCTC	1 cut(s)	691
BsoBI	CYCGRG	1 cut(s)	761
Bsp143I	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
BspACI	CCGC	3 cut(s)	250, 996, 1211
BspANI	GGCC	3 cut(s)	37, 674, 706
BspCNI	CTCAG	1 cut(s)	823
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	2 cut(s)	460, 750
BspPI	GGATC	2 cut(s)	344, 1069
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	388, 675
BssECI	CCNNGG	2 cut(s)	222, 701
BssMI	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	2 cut(s)	222, 701
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	3 cut(s)	612, 1059, 1130
Bst4CI	ACNGT	2 cut(s)	430, 440
Bst6I	CTCTTC	1 cut(s)	933
BstDEI	CTNAG	2 cut(s)	831, 932
BstF5I	GGATG	4 cut(s)	38, 491, 949, 1184
BstKTI	GATC	6 cut(s)	15, 191, 352, 391, 807, 1064
BstMAI	GTCTC	3 cut(s)	184, 683, 691
BstMBI	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	3 cut(s)	612, 1059, 1130
BstSCI	CCNGG	3 cut(s)	610, 1057, 1128
BstSFI	CTRYAG	1 cut(s)	200
BstV1I	GCAGC	2 cut(s)	333, 744
BstX2I	RGATCY	1 cut(s)	349
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	37, 674, 706
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	38, 491, 949, 1184
BtsIMutI	CAGTG	2 cut(s)	381, 426
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	88, 748
Csp6I	GTAC	2 cut(s)	227, 465
CviAII	CATG	1 cut(s)	392
CviQI	GTAC	2 cut(s)	227, 465
DdeI	CTNAG	2 cut(s)	831, 932
DpnI	GATC	6 cut(s)	14, 190, 351, 390, 806, 1063
DpnII	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	933
EarI	CTCTTC	1 cut(s)	933
Eco130I	CCWWGG	2 cut(s)	222, 701
Eco31I	GGTCTC	1 cut(s)	691
Eco47I	GGWCC	2 cut(s)	88, 748
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	761
EcoRII	CCWGG	3 cut(s)	610, 1057, 1128
EcoT14I	CCWWGG	2 cut(s)	222, 701
EcoT22I	ATGCAT	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	222, 701
FaeI	CATG	1 cut(s)	395
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FaqI	GGGAC	2 cut(s)	703, 734
FatI	CATG	1 cut(s)	391
FauI	CCCGC	1 cut(s)	1204
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	3 cut(s)	251, 322, 758
FokI	GGATG	4 cut(s)	25, 478, 956, 1171
Fsp4HI	GCNGC	3 cut(s)	251, 322, 758
FspBI	CTAG	5 cut(s)	242, 509, 693, 1197, 1219
GluI	GCNGC	3 cut(s)	251, 322, 758
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	37, 674, 706
Hin1II	CATG	1 cut(s)	395
HindIII	AAGCTT	1 cut(s)	1116
HinfI	GANTC	4 cut(s)	730, 891, 926, 1192
HphI	GGTGA	7 cut(s)	50, 398, 628, 739, 911, 1115, 1135
Hpy166II	GTNNAC	3 cut(s)	1018, 1106, 1126
Hpy188I	TCNGA	8 cut(s)	184, 331, 458, 545, 576, 589, 602, 925
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	3 cut(s)	1018, 1106, 1126
HpyAV	CCTTC	8 cut(s)	63, 79, 111, 281, 388, 409, 594, 762
HpyCH4III	ACNGT	2 cut(s)	430, 440
HpyCH4IV	ACGT	3 cut(s)	467, 798, 1159
HpyCH4V	TGCA	6 cut(s)	279, 321, 488, 791, 873, 1184
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	831, 932
HpySE526I	ACGT	3 cut(s)	467, 798, 1159
Hsp92II	CATG	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
LmnI	GCTCC	4 cut(s)	290, 458, 513, 965
Lsp1109I	GCAGC	2 cut(s)	333, 744
LweI	GCATC	6 cut(s)	475, 497, 567, 895, 1081, 1193
MaeI	CTAG	5 cut(s)	242, 509, 693, 1197, 1219
MaeII	ACGT	3 cut(s)	467, 798, 1159
MaeIII	GTNAC	6 cut(s)	207, 409, 468, 841, 875, 1045
MalI	GATC	6 cut(s)	14, 190, 351, 390, 806, 1063
MboI	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
MboII	GAAGA	6 cut(s)	365, 542, 821, 914, 950, 1145
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	9 cut(s)	106, 123, 447, 631, 824, 951, 1005, 1038, 1072
MluNI	TGGCCA	1 cut(s)	674
MmeI	TCCRAC	2 cut(s)	66, 519
MnlI	CCTC	4 cut(s)	52, 71, 249, 934
Mox20I	TGGCCA	1 cut(s)	674
Mph1103I	ATGCAT	1 cut(s)	490
MroXI	GAANNNNTTC	2 cut(s)	100, 369
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	3 cut(s)	255, 435, 1067
Msp20I	TGGCCA	1 cut(s)	674
MspR9I	CCNGG	3 cut(s)	612, 1059, 1130
Mva1269I	GAATGC	2 cut(s)	102, 791
MvaI	CCWGG	3 cut(s)	612, 1059, 1130
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	2 cut(s)	460, 750
NmuCI	GTSAC	4 cut(s)	207, 468, 841, 875
NsiI	ATGCAT	1 cut(s)	490
PagI	TCATGA	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PctI	GAATGC	2 cut(s)	102, 791
PdmI	GAANNNNTTC	2 cut(s)	100, 369
PfeI	GAWTC	4 cut(s)	730, 891, 926, 1192
PkrI	GCNGC	3 cut(s)	252, 323, 759
Psp6I	CCWGG	3 cut(s)	610, 1057, 1128
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	3 cut(s)	610, 1057, 1128
PspN4I	GGNNCC	2 cut(s)	460, 750
PspPI	GGNCC	2 cut(s)	88, 748
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	2 cut(s)	228, 466
RsaNI	GTAC	2 cut(s)	227, 465
SaqAI	TTAA	3 cut(s)	255, 435, 1067
SatI	GCNGC	3 cut(s)	251, 322, 758
Sau3AI	GATC	6 cut(s)	12, 188, 349, 388, 804, 1061
Sau96I	GGNCC	2 cut(s)	88, 748
ScrFI	CCNGG	3 cut(s)	612, 1059, 1130
SfaNI	GCATC	6 cut(s)	475, 497, 567, 895, 1081, 1193
SfcI	CTRYAG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	88, 748
SmlI	CTYRAG	2 cut(s)	19, 680
SmoI	CTYRAG	2 cut(s)	19, 680
Sse9I	AATT	9 cut(s)	106, 123, 447, 631, 824, 951, 1005, 1038, 1072
SsiI	CCGC	3 cut(s)	250, 996, 1211
SspMI	CTAG	5 cut(s)	242, 509, 693, 1197, 1219
StyD4I	CCNGG	3 cut(s)	610, 1057, 1128
StyI	CCWWGG	2 cut(s)	222, 701
TaaI	ACNGT	2 cut(s)	430, 440
TaiI	ACGT	3 cut(s)	470, 801, 1162
TaqI	TCGA	3 cut(s)	363, 807, 1054
TasI	AATT	9 cut(s)	106, 123, 447, 631, 824, 951, 1005, 1038, 1072
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	4 cut(s)	730, 891, 926, 1192
Tru1I	TTAA	3 cut(s)	255, 435, 1067
Tru9I	TTAA	3 cut(s)	255, 435, 1067
TscAI	CASTG	2 cut(s)	388, 433
TseFI	GTSAC	4 cut(s)	207, 468, 841, 875
TseI	GCWGC	2 cut(s)	321, 757
Tsp45I	GTSAC	4 cut(s)	207, 468, 841, 875
TspDTI	ATGAA	6 cut(s)	17, 300, 408, 550, 960, 1167
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	388, 433
VpaK11BI	GGWCC	2 cut(s)	88, 748
XapI	RAATTY	2 cut(s)	631, 1072
XmnI	GAANNNNTTC	2 cut(s)	100, 369
XspI	CTAG	5 cut(s)	242, 509, 693, 1197, 1219
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.