Rh3AG285400

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000722
Physical Location & Seq
Reverse (-)
33673641 .. 33675280
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG285400.1

Sequence Viewer

Length: 1335 bp
ATGGGCTCACCACCAACATGCACCCATTCACTGGTAAATATCACCACAAGAAAGATCATTAGACCCGTGTCTCCAACTCCTCATCACCAAAGAACTCTAAACCTCTCTCTTTTGGACCAACTCTTCCCTCCTACCTTATACCCTACTATCATATATTTCTACTCCATTGATCATTTTCCTTCAAATAATATTTCGGAGAGCTTACAAACATCGCTATCCAAGGCTTTGGTTTACTTTTATCCCCTGGCCGGCCGACTAAATGGCCCTGCTTCCATCGACTGCAATGATGAAGGGGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTCTCGGACTTGCTTAAACTTCCTGAACACAGCTTACTCAACAACCTCATCCCGGAGTTTGATCCTCAAACCGCCCATTCAGCCTTAGGTTCTGCAGTTTTGCTTGTCCAAATGAGTCGTTTTAACTGCGGAGGAATCGCCCTTGCTGTGTCGCTGTCGCACAAGATCGCAGATGCAACTTCATGTCAAACATTTCTACGAGCATGGGCAGACATAAATCGTGATAATGAATGTGATAGTCAACTAATGGTACCACAGTTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTCCTTCGTAAACAACTTAGGGTTACCGAAGTATCAAAGTTTAGCTACTAGGAGGTTCGTGTTTGATGTCACTAAGATTGCCAATCTCAAGGTCAAAATAGGAGGTACGAACGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATAAATCCAAGCCGGAGACCTGTTCAAGTACAGCAGTGTTGTCGCAAATGGTAAATCTCCGTAGAAGTATGGGTTCTGTGGTACAGGAAAATGCCATGGGAAATTGGTTTTGGCCACTTCAAGTAGTATTCAAACCAAACGAGACGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGAAATAACAGACTTCTACAAAGAGAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGAGAGCTTTATAGAAACACCAAGGGATGCATCAGTGTTTATAGAGCCACAAGTTTGTGCAAGCTCCCTGTATATGAAATTGATTTTGGGTGGGGACAACCAACATGGGTTACTAGCCAAAGCAACCAGAAGAACATATTTGTGTTGATTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTCGATGAAGAAGAAATGGCCATATTTGAGACTGATGAGGAGCTCCTTTCATTCGCTTCTCTAAACCCCAGTGCTAGTGTCAATCAGCACTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

444

Amino Acids

49.54

Weight (kDa)

6.33

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 426 2.4e-75 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
Acc65I GGTACC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 3 cut(s) 399, 456, 986
AclWI GGATC 2 cut(s) 383, 1223
AcoI YGGCCR 4 cut(s) 246, 250, 890, 1251
AcsI RAATTY 1 cut(s) 992
AfaI GTAC 5 cut(s) 579, 724, 732, 808, 861
AfiI CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
AgsI TTSAA 6 cut(s) 183, 757, 804, 899, 910, 997
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 4 cut(s) 871, 903, 1113, 1145
AloI GAACNNNNNNTCC 2 cut(s) 995, 1027
AluBI AGCT 7 cut(s) 201, 328, 360, 662, 1051, 1108, 1276
AluI AGCT 7 cut(s) 201, 328, 360, 662, 1051, 1108, 1276
Alw21I GWGCWC 2 cut(s) 766, 1278
Alw26I GTCTC 4 cut(s) 75, 788, 914, 1256
AlwI GGATC 2 cut(s) 383, 1223
AoxI GGCC 6 cut(s) 246, 250, 262, 309, 890, 1251
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 992
Asp718I GGTACC 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 115, 263, 310
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 4 cut(s) 34, 77, 1030, 1240
AvaII GGWCC 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 412
BaeI ACNNNNGTAYC 6 cut(s) 569, 602, 632, 665, 714, 747
BalI TGGCCA 2 cut(s) 892, 1253
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 8, 1278
BauI CACGAG 1 cut(s) 765
Bbv12I GWGCWC 2 cut(s) 766, 1278
BbvI GCAGC 1 cut(s) 757
BccI CCATC 3 cut(s) 281, 1001, 1205
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 4 cut(s) 75, 788, 914, 1256
BfaI CTAG 3 cut(s) 666, 1158, 1308
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 1 cut(s) 771
BlsI GCNGC 1 cut(s) 772
Bme1390I CCNGG 2 cut(s) 245, 380
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 115, 263, 310
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 2 cut(s) 245, 380
BmrI ACTGGG 1 cut(s) 1296
BmsI GCATC 4 cut(s) 490, 605, 1061, 1083
BmuI ACTGGG 1 cut(s) 1296
BoxI GACNNNNGTC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 326, 689
BpuMI CCSGG 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 4 cut(s) 219, 243, 873, 1065
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
Bse118I RCCGGY 2 cut(s) 248, 607
Bse1I ACTGG 2 cut(s) 36, 1302
Bse21I CCTNAGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 4 cut(s) 219, 243, 873, 1065
BseGI GGATG 2 cut(s) 375, 1076
BseLI CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 1017
BseNI ACTGG 2 cut(s) 36, 1302
BseRI GAGGAG 3 cut(s) 69, 967, 1286
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 757
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 6 cut(s) 248, 252, 264, 311, 892, 1253
BshNI GGYRCC 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 2 cut(s) 766, 1278
BsiSI CCGG 4 cut(s) 249, 380, 608, 791
BslFI GGGAC 1 cut(s) 1152
BslI CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
BsmAI GTCTC 4 cut(s) 75, 788, 914, 1256
BsmBI CGTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 1152
BsnI GGCC 6 cut(s) 248, 252, 264, 311, 892, 1253
Bso31I GGTCTC 1 cut(s) 788
Bsp1286I GDGCHC 3 cut(s) 8, 766, 1278
Bsp143I GATC 5 cut(s) 54, 169, 388, 492, 1215
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 3 cut(s) 399, 456, 986
BspANI GGCC 6 cut(s) 248, 252, 264, 311, 892, 1253
BspCNI CTCAG 1 cut(s) 1018
BspLI GGNNCC 1 cut(s) 579
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 2 cut(s) 383, 1223
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 2 cut(s) 248, 607
BsrI ACTGG 2 cut(s) 36, 1302
BssAI RCCGGY 2 cut(s) 248, 607
BssECI CCNNGG 4 cut(s) 219, 243, 873, 1065
BssMI GATC 5 cut(s) 54, 169, 388, 492, 1215
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 3 cut(s) 219, 873, 1065
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 5 cut(s) 250, 326, 609, 988, 1106
BstDEI CTNAG 4 cut(s) 412, 634, 690, 1026
BstDSI CCRYGG 1 cut(s) 873
BstEII GGTNACC 1 cut(s) 639
BstF5I GGATG 2 cut(s) 375, 1076
BstKTI GATC 5 cut(s) 57, 172, 391, 495, 1218
BstMAI GTCTC 4 cut(s) 75, 788, 914, 1256
BstMBI GATC 5 cut(s) 54, 169, 388, 492, 1215
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 407, 770
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 639
BstSCI CCNGG 2 cut(s) 243, 378
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 757
BstXI CCANNNNNNTGG 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 412
BsuRI GGCC 6 cut(s) 248, 252, 264, 311, 892, 1253
BtgI CCRYGG 1 cut(s) 873
BtgZI GCGATG 2 cut(s) 195, 1224
BtsCI GGATG 2 cut(s) 375, 1076
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 4 cut(s) 29, 819, 1084, 1309
Cac8I GCNNGC 5 cut(s) 250, 326, 609, 988, 1106
Cfr10I RCCGGY 2 cut(s) 248, 607
Cfr13I GGNCC 3 cut(s) 115, 263, 310
Csp6I GTAC 5 cut(s) 578, 723, 731, 807, 860
CviAII CATG 7 cut(s) 18, 510, 531, 874, 932, 1149, 1224
CviQI GTAC 5 cut(s) 578, 723, 731, 807, 860
DdeI CTNAG 4 cut(s) 412, 634, 690, 1026
DpnI GATC 5 cut(s) 56, 171, 390, 494, 1217
DpnII GATC 5 cut(s) 54, 169, 388, 492, 1215
EaeI YGGCCR 4 cut(s) 246, 250, 890, 1251
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 1276
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 3 cut(s) 219, 873, 1065
Eco24I GRGCYC 2 cut(s) 8, 1278
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 1276
Eco81I CCTNAGG 1 cut(s) 412
Eco91I GGTNACC 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 1276
EcoO65I GGTNACC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 3 cut(s) 219, 873, 1065
EcoT22I ATGCAT 1 cut(s) 1076
EcoT38I GRGCYC 2 cut(s) 8, 1278
ErhI CCWWGG 3 cut(s) 219, 873, 1065
Esp3I CGTCTC 1 cut(s) 914
FaeI CATG 7 cut(s) 21, 513, 534, 877, 935, 1152, 1227
FaqI GGGAC 1 cut(s) 1152
FatI CATG 7 cut(s) 17, 509, 530, 873, 931, 1148, 1223
FauI CCCGC 1 cut(s) 979
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 771
FokI GGATG 2 cut(s) 362, 1083
FriOI GRGCYC 2 cut(s) 8, 1278
FseI GGCCGGCC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 771
FspBI CTAG 3 cut(s) 666, 1158, 1308
GluI GCNGC 1 cut(s) 771
HaeIII GGCC 6 cut(s) 248, 252, 264, 311, 892, 1253
HapII CCGG 4 cut(s) 249, 380, 608, 791
Hin1II CATG 7 cut(s) 21, 513, 534, 877, 935, 1152, 1227
HincII GTYRAC 2 cut(s) 319, 569
HindII GTYRAC 2 cut(s) 319, 569
HinfI GANTC 4 cut(s) 442, 462, 617, 1028
HpaII CCGG 4 cut(s) 249, 380, 608, 791
HphI GGTGA 4 cut(s) 34, 77, 1030, 1240
Hpy166II GTNNAC 4 cut(s) 232, 319, 569, 628
Hpy188I TCNGA 3 cut(s) 196, 334, 1027
Hpy188III TCNNGA 4 cut(s) 305, 350, 548, 754
Hpy8I GTNNAC 4 cut(s) 232, 319, 569, 628
HpyAV CCTTC 4 cut(s) 189, 284, 631, 976
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 2 cut(s) 729, 1204
HpyCH4V TGCA 6 cut(s) 21, 282, 422, 503, 1074, 1104
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 770
HpyF3I CTNAG 4 cut(s) 412, 634, 690, 1026
HpySE526I ACGT 2 cut(s) 729, 1204
Hsp92II CATG 7 cut(s) 21, 513, 534, 877, 935, 1152, 1227
KpnI GGTACC 1 cut(s) 581
KroI GCCGGC 2 cut(s) 248, 607
KroNI GCCGGC 2 cut(s) 250, 609
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 5 cut(s) 54, 169, 388, 492, 1215
LmnI GCTCC 4 cut(s) 593, 1113, 1273, 1281
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 4 cut(s) 490, 605, 1061, 1083
MaeI CTAG 3 cut(s) 666, 1158, 1308
MaeII ACGT 2 cut(s) 729, 1204
MaeIII GTNAC 4 cut(s) 639, 685, 1153, 1228
MalI GATC 5 cut(s) 56, 171, 390, 494, 1217
MboI GATC 5 cut(s) 54, 169, 388, 492, 1215
MboII GAAGA 5 cut(s) 115, 1016, 1186, 1253, 1256
MhlI GDGCHC 3 cut(s) 8, 766, 1278
MlsI TGGCCA 2 cut(s) 892, 1253
MluCI AATT 3 cut(s) 880, 992, 1122
MluNI TGGCCA 2 cut(s) 892, 1253
MlyI GAGTC 3 cut(s) 451, 611, 1037
MmeI TCCRAC 1 cut(s) 98
Mox20I TGGCCA 2 cut(s) 892, 1253
Mph1103I ATGCAT 1 cut(s) 1076
MroNI GCCGGC 2 cut(s) 248, 607
MscI TGGCCA 2 cut(s) 892, 1253
MseI TTAA 3 cut(s) 342, 450, 588
MslI CAYNNNNRTG 2 cut(s) 16, 1184
Msp20I TGGCCA 2 cut(s) 892, 1253
MspI CCGG 4 cut(s) 249, 380, 608, 791
MspR9I CCNGG 2 cut(s) 245, 380
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 407, 770
NaeI GCCGGC 2 cut(s) 250, 609
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 1 cut(s) 873
NdeII GATC 5 cut(s) 54, 169, 388, 492, 1215
NgoMIV GCCGGC 2 cut(s) 248, 607
NlaIII CATG 7 cut(s) 21, 513, 534, 877, 935, 1152, 1227
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 2 cut(s) 685, 1228
NsiI ATGCAT 1 cut(s) 1076
NspI RCATGY 1 cut(s) 21
PdiI GCCGGC 2 cut(s) 250, 609
PfeI GAWTC 1 cut(s) 462
PflMI CCANNNNNTGG 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 1 cut(s) 772
PleI GAGTC 3 cut(s) 450, 611, 1036
PpsI GAGTC 3 cut(s) 450, 611, 1036
PshAI GACNNNNGTC 1 cut(s) 67
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1278
Psp6I CCWGG 1 cut(s) 243
PspEI GGTNACC 1 cut(s) 639
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 3 cut(s) 115, 263, 310
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
PstI CTGCAG 1 cut(s) 424
RigI GGCCGGCC 1 cut(s) 252
RsaI GTAC 5 cut(s) 579, 724, 732, 808, 861
RsaNI GTAC 5 cut(s) 578, 723, 731, 807, 860
RseI CAYNNNNRTG 2 cut(s) 16, 1184
SacI GAGCTC 1 cut(s) 1278
SaqAI TTAA 3 cut(s) 342, 450, 588
SatI GCNGC 1 cut(s) 771
Sau3AI GATC 5 cut(s) 54, 169, 388, 492, 1215
Sau96I GGNCC 3 cut(s) 115, 263, 310
SchI GAGTC 3 cut(s) 451, 611, 1037
ScrFI CCNGG 2 cut(s) 245, 380
SduI GDGCHC 3 cut(s) 8, 766, 1278
SfaNI GCATC 4 cut(s) 490, 605, 1061, 1083
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 2 cut(s) 16, 1184
SmlI CTYRAG 2 cut(s) 305, 704
SmoI CTYRAG 2 cut(s) 305, 704
Sse9I AATT 3 cut(s) 880, 992, 1122
SsiI CCGC 3 cut(s) 399, 456, 986
SspI AATATT 1 cut(s) 190
SspMI CTAG 3 cut(s) 666, 1158, 1308
SstI GAGCTC 1 cut(s) 1278
StyD4I CCNGG 2 cut(s) 243, 378
StyI CCWWGG 3 cut(s) 219, 873, 1065
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 2 cut(s) 732, 1207
TaqI TCGA 3 cut(s) 276, 1218, 1236
TasI AATT 3 cut(s) 880, 992, 1122
TatI WGTACW 1 cut(s) 806
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 3 cut(s) 342, 450, 588
Tru9I TTAA 3 cut(s) 342, 450, 588
TscAI CASTG 4 cut(s) 36, 819, 1084, 1309
TseFI GTSAC 2 cut(s) 685, 1228
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 685, 1228
TspDTI ATGAA 6 cut(s) 303, 498, 570, 1134, 1254, 1272
TspGWI ACGGA 3 cut(s) 606, 827, 938
TspRI CASTG 4 cut(s) 36, 819, 1084, 1309
Van91I CCANNNNNTGG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 992
XceI RCATGY 1 cut(s) 21
XspI CTAG 3 cut(s) 666, 1158, 1308
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.