Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

46315780 .. 46319868

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGCCTTCTACTTGATCAGTTTCTTTTTTCTCCTATATTTATTGGGGTTTTCTTATCGGCATTGATGACACCGGAGGGAAGACCTTCCCAAATGGTACCTAAGCTACAACAGAGTGGTTTTCTGCTGTGCTTGCTAATTGGCAGCTGTGGATACCTTTCCAATTTCTTAACTTTCGTGATCCTACTTCCACCGTTTCGCAGCGCTTGCAAGCATCTCTCTCCAAAGCTTTGGTTCTCGATCTTCTATCTACTAGCCGGCCGACCGAAAACCGCCGCCTCCGTTGATTGCAACGACGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACCGCCAGCTCTCGGATTTACTTAAAGTTCCCGAGCACAAGTTGCTTAATAACCTTATCCCCGAGTTTGAGCCTAAAACAGTCCAGCTTAGCATTGGTGGTATTCAAACAAAACGAGATAGAACTACGAAGTTGGTTGCTAAAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGAACGATTCAAAAGGTGAAGATGGATTCCTGGTGGTGTCCAAGTCACTTAGAGAGAGGGGTGAGTTCTTTAAGAGCACAAAAGGGTGCATTAACCTTTATAGGTGTAGAAGTTTGTGCAAGCTCCCCGTATATGAAACTGATTTTGGTTGGGGAAACCAACGTGGGTCACTAGCCAAAGCAACCACAAGAACCTATTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

237

Amino Acids

26.72

Weight (kDa)

9.55

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	81 - 132	1.3e-09	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	97
AciI	CCGC	3 cut(s)	273, 276, 331
AclWI	GGATC	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	259
AfaI	GTAC	1 cut(s)	99
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	434, 519
AjnI	CCWGG	1 cut(s)	537
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	7 cut(s)	106, 147, 229, 305, 337, 415, 631
AluI	AGCT	7 cut(s)	106, 147, 229, 305, 337, 415, 631
Alw21I	GWGCWC	3 cut(s)	307, 366, 587
AlwI	GGATC	1 cut(s)	175
Ama87I	CYCGRG	3 cut(s)	321, 359, 389
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	2 cut(s)	259, 318
ApeKI	GCWGC	2 cut(s)	144, 201
Asp700I	GAANNNNTTC	1 cut(s)	85
Asp718I	GGTACC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	2 cut(s)	536, 581
AvaI	CYCGRG	3 cut(s)	321, 359, 389
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	3 cut(s)	307, 366, 587
BbvI	GCAGC	2 cut(s)	156, 213
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	2 cut(s)	254, 680
BfoI	RGCGCY	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	3 cut(s)	145, 202, 276
BlpI	GCTNAGC	1 cut(s)	416
BlsI	GCNGC	3 cut(s)	146, 203, 277
Bme1390I	CCNGG	1 cut(s)	539
BmeT110I	CYCGRG	3 cut(s)	321, 359, 389
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	539
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	88
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	539
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	156, 213
Bsh1285I	CGRYCG	2 cut(s)	262, 266
BshFI	GGCC	2 cut(s)	261, 320
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	2 cut(s)	262, 266
BsiHKAI	GWGCWC	3 cut(s)	307, 366, 587
BsiHKCI	CYCGRG	3 cut(s)	321, 359, 389
BsiSI	CCGG	2 cut(s)	74, 258
BslI	CCNNNNNNNGG	1 cut(s)	340
BsnI	GGCC	2 cut(s)	261, 320
BsoBI	CYCGRG	3 cut(s)	321, 359, 389
Bsp1286I	GDGCHC	3 cut(s)	307, 366, 587
Bsp143I	GATC	3 cut(s)	16, 180, 240
Bsp1720I	GCTNAGC	1 cut(s)	416
BspACI	CCGC	3 cut(s)	273, 276, 331
BspANI	GGCC	2 cut(s)	261, 320
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	3 cut(s)	16, 180, 240
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	195, 409
BstAPI	GCANNNNNTGC	2 cut(s)	207, 370
BstC8I	GCNNGC	6 cut(s)	134, 208, 212, 259, 335, 629
BstDEI	CTNAG	3 cut(s)	102, 416, 557
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	3 cut(s)	19, 183, 243
BstMBI	GATC	3 cut(s)	16, 180, 240
BstMCI	CGRYCG	2 cut(s)	262, 266
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 207, 370
BstNI	CCWGG	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	537
BstV1I	GCAGC	2 cut(s)	156, 213
BstV2I	GAAGAC	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstZI	CGGCCG	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	261, 320
Cac8I	GCNNGC	6 cut(s)	134, 208, 212, 259, 335, 629
CfoI	GCGC	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	98
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	3 cut(s)	102, 416, 557
DpnI	GATC	3 cut(s)	18, 182, 242
DpnII	GATC	3 cut(s)	16, 180, 240
EaeI	YGGCCR	1 cut(s)	259
EagI	CGGCCG	1 cut(s)	259
Ecl136II	GAGCTC	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	307
Eco47III	AGCGCT	1 cut(s)	205
Eco52I	CGGCCG	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	305
Eco88I	CYCGRG	3 cut(s)	321, 359, 389
EcoICRI	GAGCTC	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	307
FaiI	YATR	4 cut(s)	38, 609, 640, 642
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	145, 202, 276
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	3 cut(s)	145, 202, 276
FspBI	CTAG	2 cut(s)	254, 680
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	3 cut(s)	145, 202, 276
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	261, 320
HapII	CCGG	2 cut(s)	74, 258
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	2 cut(s)	515, 534
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	74, 258
HphI	GGTGA	2 cut(s)	536, 581
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	5 cut(s)	178, 238, 314, 359, 711
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	4 cut(s)	17, 96, 293, 499
HpyCH4III	ACNGT	2 cut(s)	195, 409
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	4 cut(s)	210, 291, 597, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 207, 370
HpyF3I	CTNAG	3 cut(s)	102, 416, 557
HpySE526I	ACGT	1 cut(s)	670
HspAI	GCGC	1 cut(s)	204
KpnI	GGTACC	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	16, 180, 240
LmnI	GCTCC	2 cut(s)	302, 636
LpnPI	CCDG	6 cut(s)	87, 271, 347, 425, 524, 551
Lsp1109I	GCAGC	2 cut(s)	156, 213
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	254, 680
MaeII	ACGT	1 cut(s)	670
MaeIII	GTNAC	3 cut(s)	484, 552, 675
MalI	GATC	3 cut(s)	18, 182, 242
MboI	GATC	3 cut(s)	16, 180, 240
MboII	GAAGA	3 cut(s)	93, 235, 539
MhlI	GDGCHC	3 cut(s)	307, 366, 587
MluCI	AATT	2 cut(s)	138, 163
MnlI	CCTC	5 cut(s)	70, 289, 310, 468, 558
MroNI	GCCGGC	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	85
MseI	TTAA	6 cut(s)	170, 327, 351, 375, 579, 600
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	74, 258
MspR9I	CCNGG	1 cut(s)	539
MvaI	CCWGG	1 cut(s)	539
MwoI	GCNNNNNNNGC	3 cut(s)	133, 207, 370
NaeI	GCCGGC	1 cut(s)	259
NdeII	GATC	3 cut(s)	16, 180, 240
NgoMIV	GCCGGC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	552, 675
PdiI	GCCGGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	515, 534
PkrI	GCNGC	3 cut(s)	146, 203, 277
Psp124BI	GAGCTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	537
PspGI	CCWGG	1 cut(s)	537
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	147
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SacI	GAGCTC	1 cut(s)	307
SaqAI	TTAA	6 cut(s)	170, 327, 351, 375, 579, 600
SatI	GCNGC	3 cut(s)	145, 202, 276
Sau3AI	GATC	3 cut(s)	16, 180, 240
Sau96I	GGNCC	1 cut(s)	319
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	3 cut(s)	307, 366, 587
SfaNI	GCATC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	138, 163
SsiI	CCGC	3 cut(s)	273, 276, 331
SspMI	CTAG	2 cut(s)	254, 680
SstI	GAGCTC	1 cut(s)	307
StyD4I	CCNGG	1 cut(s)	537
TaaI	ACNGT	2 cut(s)	195, 409
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	1 cut(s)	239
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	2 cut(s)	138, 163
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	2 cut(s)	515, 534
Tru1I	TTAA	6 cut(s)	170, 327, 351, 375, 579, 600
Tru9I	TTAA	6 cut(s)	170, 327, 351, 375, 579, 600
TseFI	GTSAC	2 cut(s)	552, 675
TseI	GCWGC	2 cut(s)	144, 201
Tsp45I	GTSAC	2 cut(s)	552, 675
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	2 cut(s)	254, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.