RchiOBHm_Chr3g0487911

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000722
Physical Location & Seq
Reverse (-)
35341535 .. 35342293
759 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45232

Sequence Viewer

Length: 759 bp
ATGGTACCACAGTTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTCCTTCGTAAACAATTTAGGGCTACCAAAGTTCCAAAGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATTGCCACTCTCAAGGCTAAAATTGGAGGTACAAACGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCTAAACAGGAGACGAGTTCAAGTACAGCAGTGTTGTCGCAAATGGTAAATGTCCGTAGAAGTATGGGTTCGTTGGTAGAAAATGCCATGGGAAATTGGTTTTGGCCGCTTCAAGTGATATTCAAACCAAACGAGACGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGAAATAGCAAACTTCTACAAAGAGAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGACGCATCAGTGTTTATAGGGCCACTAGTTTGTGCAAGCTCCCTGTATATGAAATTGATTTTGGGTGGGGAAAACCAACATGGGTTACTAGCCAAAGCAACCAGAAGAACATATTTGTGTTGATTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTCGATGAAGAAGAAATGGCCATATTTGAGAGTGATGAGGAGCTCCTTTCGTTCACTTCTCTAAATCCCAGTGCTAGTGTCAATCGTCATTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

252

Amino Acids

28.43

Weight (kDa)

9.25

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 42 - 234 7.2e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 317, 410
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 2 cut(s) 314, 675
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 4 cut(s) 6, 151, 159, 235
AgsI TTSAA 5 cut(s) 184, 231, 323, 334, 421
AhlI ACTAGT 1 cut(s) 518
AjuI GAANNNNNNNTTGG 4 cut(s) 295, 327, 537, 569
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 3 cut(s) 475, 532, 700
AluI AGCT 3 cut(s) 475, 532, 700
Alw21I GWGCWC 2 cut(s) 193, 702
Alw26I GTCTC 2 cut(s) 215, 338
AlwI GGATC 1 cut(s) 647
AoxI GGCC 3 cut(s) 314, 513, 675
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 416
Asp718I GGTACC 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 2 cut(s) 454, 664
BaeI ACNNNNGTAYC 3 cut(s) 29, 141, 174
BalI TGGCCA 1 cut(s) 677
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 702
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 193, 702
BbvI GCAGC 1 cut(s) 184
BccI CCATC 2 cut(s) 425, 629
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BcoDI GTCTC 2 cut(s) 215, 338
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 4 cut(s) 93, 519, 582, 732
BisI GCNGC 2 cut(s) 198, 317
BlsI GCNGC 2 cut(s) 199, 318
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 2 cut(s) 32, 507
BmuI ACTGGG 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 297, 489
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 726
BseDI CCNNGG 2 cut(s) 297, 489
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 2 cut(s) 391, 710
BseXI GCAGC 1 cut(s) 184
BshFI GGCC 3 cut(s) 316, 515, 677
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 193, 702
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 507
BsmAI GTCTC 2 cut(s) 215, 338
BsmBI CGTCTC 2 cut(s) 215, 338
BsmFI GGGAC 1 cut(s) 507
BsnI GGCC 3 cut(s) 316, 515, 677
Bsp1286I GDGCHC 2 cut(s) 193, 702
Bsp143I GATC 1 cut(s) 639
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 2 cut(s) 317, 410
BspANI GGCC 3 cut(s) 316, 515, 677
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 1 cut(s) 726
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 297, 489
BssMI GATC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 297, 489
Bst2BI CACGAG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 12
BstC8I GCNNGC 4 cut(s) 36, 412, 473, 530
BstDEI CTNAG 1 cut(s) 450
BstDSI CCRYGG 1 cut(s) 297
BstKTI GATC 1 cut(s) 642
BstMAI GTCTC 2 cut(s) 215, 338
BstMBI GATC 1 cut(s) 639
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 3 cut(s) 316, 515, 677
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 648
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 3 cut(s) 246, 508, 733
Cac8I GCNNGC 4 cut(s) 36, 412, 473, 530
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 513
CseI GACGC 1 cut(s) 504
Csp6I GTAC 4 cut(s) 5, 150, 158, 234
CviAII CATG 4 cut(s) 298, 356, 573, 648
CviQI GTAC 4 cut(s) 5, 150, 158, 234
DdeI CTNAG 1 cut(s) 450
DpnI GATC 1 cut(s) 641
DpnII GATC 1 cut(s) 639
EaeI YGGCCR 2 cut(s) 314, 675
Ecl136II GAGCTC 1 cut(s) 700
Eco130I CCWWGG 2 cut(s) 297, 489
Eco24I GRGCYC 1 cut(s) 702
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoT14I CCWWGG 2 cut(s) 297, 489
EcoT38I GRGCYC 1 cut(s) 702
ErhI CCWWGG 2 cut(s) 297, 489
Esp3I CGTCTC 2 cut(s) 215, 338
FaeI CATG 4 cut(s) 301, 359, 576, 651
FaqI GGGAC 1 cut(s) 507
FatI CATG 4 cut(s) 297, 355, 572, 647
FauI CCCGC 1 cut(s) 403
Fnu4HI GCNGC 2 cut(s) 198, 317
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 2 cut(s) 198, 317
FspBI CTAG 4 cut(s) 93, 519, 582, 732
GluI GCNGC 2 cut(s) 198, 317
HaeIII GGCC 3 cut(s) 316, 515, 677
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 504
Hin1II CATG 4 cut(s) 301, 359, 576, 651
HinfI GANTC 2 cut(s) 44, 452
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 454, 664
Hpy166II GTNNAC 2 cut(s) 55, 711
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 2 cut(s) 115, 181
Hpy8I GTNNAC 2 cut(s) 55, 711
HpyAV CCTTC 2 cut(s) 58, 400
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 2 cut(s) 156, 628
HpyCH4V TGCA 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 2 cut(s) 156, 628
Hsp92II CATG 4 cut(s) 301, 359, 576, 651
KpnI GGTACC 1 cut(s) 8
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Kzo9I GATC 1 cut(s) 639
LmnI GCTCC 4 cut(s) 20, 537, 697, 705
LpnPI CCDG 5 cut(s) 48, 203, 549, 608, 739
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 32, 507
MaeI CTAG 4 cut(s) 93, 519, 582, 732
MaeII ACGT 2 cut(s) 156, 628
MaeIII GTNAC 3 cut(s) 112, 577, 652
MalI GATC 1 cut(s) 641
MboI GATC 1 cut(s) 639
MboII GAAGA 5 cut(s) 130, 440, 610, 677, 680
MhlI GDGCHC 2 cut(s) 193, 702
MlsI TGGCCA 1 cut(s) 677
MluCI AATT 5 cut(s) 58, 141, 304, 416, 546
MluNI TGGCCA 1 cut(s) 677
MlyI GAGTC 2 cut(s) 38, 461
MnlI CCTC 5 cut(s) 90, 140, 369, 459, 688
Mox20I TGGCCA 1 cut(s) 677
MroNI GCCGGC 1 cut(s) 34
MscI TGGCCA 1 cut(s) 677
MseI TTAA 2 cut(s) 15, 86
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 1 cut(s) 677
MspI CCGG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 297
NdeII GATC 1 cut(s) 639
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 4 cut(s) 301, 359, 576, 651
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 112, 652
PcsI WCGNNNNNNNCGW 1 cut(s) 748
PdiI GCCGGC 1 cut(s) 36
PkrI GCNGC 2 cut(s) 199, 318
PleI GAGTC 2 cut(s) 38, 460
PpsI GAGTC 2 cut(s) 38, 460
Psp124BI GAGCTC 1 cut(s) 702
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 513
RsaI GTAC 4 cut(s) 6, 151, 159, 235
RsaNI GTAC 4 cut(s) 5, 150, 158, 234
RseI CAYNNNNRTG 1 cut(s) 608
SacI GAGCTC 1 cut(s) 702
SaqAI TTAA 2 cut(s) 15, 86
SatI GCNGC 2 cut(s) 198, 317
Sau3AI GATC 1 cut(s) 639
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 2 cut(s) 38, 461
SduI GDGCHC 2 cut(s) 193, 702
SetI ASST 7 cut(s) 101, 151, 159, 477, 534, 631, 702
SfaNI GCATC 2 cut(s) 32, 507
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 5 cut(s) 58, 141, 304, 416, 546
SsiI CCGC 2 cut(s) 317, 410
SspMI CTAG 4 cut(s) 93, 519, 582, 732
SstI GAGCTC 1 cut(s) 702
StyI CCWWGG 2 cut(s) 297, 489
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 2 cut(s) 159, 631
TaqI TCGA 2 cut(s) 642, 660
TasI AATT 5 cut(s) 58, 141, 304, 416, 546
TatI WGTACW 1 cut(s) 233
TauI GCSGC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 15, 86
Tru9I TTAA 2 cut(s) 15, 86
TscAI CASTG 3 cut(s) 246, 508, 733
TseFI GTSAC 2 cut(s) 112, 652
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 2 cut(s) 112, 652
TspDTI ATGAA 2 cut(s) 558, 678
TspGWI ACGGA 3 cut(s) 33, 254, 362
TspRI CASTG 3 cut(s) 246, 508, 733
XapI RAATTY 1 cut(s) 416
XspI CTAG 4 cut(s) 93, 519, 582, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.