Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

33601161 .. 33605965

Gene Structure 4805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGGAGAGAAATAGCAAACTTCTACAAAGAGAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGACGCATCAGTGTTTATAGGGCCACTAGTTTGTGCAAGCTCCCTGTATATGAAATTGATTTTGGGTGGGGAAAACCAACATGGGTTACTAGCCAAAGCAACCAGAAGAACATATTTGTGTTGATTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTCGATGAAGAAGAAATGGCCATATTTGAGAGTGATGAGGAGCTCCTTTCGTTCACTTCTCTAAATCCCAGTGCTAGTGTCAATCGTCATTCTCAAATCAACAAGGGGTCCAGTGATTTTCCAGTGAAGAGACCTACAGAGGAGGAAGAGACCGAGACTGGCAAAGAGCCGGATTGCTTTTATGCTGTAATTCCTGGATGGACTCCAAGGTTGACGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

168

Amino Acids

19.32

Weight (kDa)

5.26

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	44 - 110	4e-15	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	275
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	49
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	478
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	103, 160, 328
AluI	AGCT	3 cut(s)	103, 160, 328
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	3 cut(s)	409, 428, 434
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	2 cut(s)	141, 303
ApoI	RAATTY	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	141, 393
AsuHPI	GGTGA	2 cut(s)	82, 292
AvaII	GGWCC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BccI	CCATC	3 cut(s)	53, 257, 477
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	409, 428, 434
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	3 cut(s)	147, 210, 360
BfmI	CTRYAG	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	141, 393
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	480
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	348
BsaI	GGTCTC	2 cut(s)	409, 428
BsaJI	CCNNGG	2 cut(s)	117, 491
Bse1I	ACTGG	4 cut(s)	354, 396, 407, 448
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	117, 491
BseGI	GGATG	1 cut(s)	488
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	4 cut(s)	354, 396, 407, 448
BseRI	GAGGAG	3 cut(s)	19, 338, 440
BshFI	GGCC	2 cut(s)	143, 305
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	135
BsmAI	GTCTC	3 cut(s)	409, 428, 434
BsmFI	GGGAC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	143, 305
Bso31I	GGTCTC	2 cut(s)	409, 428
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	143, 305
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	275
BspTNI	GGTCTC	2 cut(s)	409, 428
BsrI	ACTGG	4 cut(s)	354, 396, 407, 448
BssECI	CCNNGG	2 cut(s)	117, 491
BssMI	GATC	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	117, 491
Bst2UI	CCWGG	1 cut(s)	480
Bst6I	CTCTTC	2 cut(s)	407, 426
BstC8I	GCNNGC	3 cut(s)	40, 101, 158
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	488
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	3 cut(s)	409, 428, 434
BstMBI	GATC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstSFI	CTRYAG	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	143, 305
BtgZI	GCGATG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	488
BtsIMutI	CAGTG	4 cut(s)	136, 361, 403, 414
Cac8I	GCNNGC	3 cut(s)	40, 101, 158
Cfr13I	GGNCC	2 cut(s)	141, 393
CseI	GACGC	1 cut(s)	132
CviAII	CATG	2 cut(s)	201, 276
CviJI	RGCY	7 cut(s)	103, 143, 160, 213, 305, 328, 454
CviKI_1	RGCY	7 cut(s)	103, 143, 160, 213, 305, 328, 454
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	2 cut(s)	407, 426
EarI	CTCTTC	2 cut(s)	407, 426
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	117, 491
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	409, 428
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	117, 491
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	117, 491
FaeI	CATG	2 cut(s)	204, 279
FaiI	YATR	9 cut(s)	108, 138, 169, 171, 202, 233, 277, 308, 468
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	2 cut(s)	200, 275
FauI	CCCGC	1 cut(s)	31
FokI	GGATG	1 cut(s)	495
FriOI	GRGCYC	1 cut(s)	330
FspBI	CTAG	3 cut(s)	147, 210, 360
HaeIII	GGCC	2 cut(s)	143, 305
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	204, 279
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	2 cut(s)	80, 487
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	82, 292
Hpy166II	GTNNAC	2 cut(s)	339, 498
Hpy188I	TCNGA	1 cut(s)	79
Hpy8I	GTNNAC	2 cut(s)	339, 498
HpyAV	CCTTC	1 cut(s)	28
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	1 cut(s)	156
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	204, 279
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	3 cut(s)	165, 325, 333
LpnPI	CCDG	9 cut(s)	177, 236, 367, 409, 420, 429, 465, 468, 492
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	3 cut(s)	147, 210, 360
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	2 cut(s)	205, 280
MalI	GATC	1 cut(s)	269
MboI	GATC	1 cut(s)	267
MboII	GAAGA	6 cut(s)	68, 238, 305, 308, 424, 443
MhlI	GDGCHC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	3 cut(s)	44, 174, 474
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	2 cut(s)	89, 481
MnlI	CCTC	4 cut(s)	87, 316, 418, 421
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
NdeII	GATC	1 cut(s)	267
NlaIII	CATG	2 cut(s)	204, 279
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	478
PleI	GAGTC	2 cut(s)	88, 481
PpsI	GAGTC	2 cut(s)	88, 481
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	141, 393
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	267
Sau96I	GGNCC	2 cut(s)	141, 393
SchI	GAGTC	2 cut(s)	89, 481
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	6 cut(s)	105, 162, 259, 330, 421, 497
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	3 cut(s)	44, 174, 474
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	3 cut(s)	147, 210, 360
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	478
StyI	CCWWGG	2 cut(s)	117, 491
TaiI	ACGT	1 cut(s)	259
TaqI	TCGA	2 cut(s)	270, 288
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	3 cut(s)	44, 174, 474
TscAI	CASTG	4 cut(s)	136, 361, 403, 414
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	186, 306
TspRI	CASTG	4 cut(s)	136, 361, 403, 414
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	1 cut(s)	44
XspI	CTAG	3 cut(s)	147, 210, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.