Rroxscaffold_6G00394440

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000722
Physical Location & Seq
Forward (+)
15000878 .. 15002224
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394440.1

Sequence Viewer

Length: 1347 bp
ATGAGTTATCATCCCATGGGTTCACCAGCAACATGCACGCATTCACTGGTAAATATCACTTCAAGAAAGATCATTAGACCCTCGTCTCCAACTCCTCATCACCAAAGAACTCTCAACCTCTCTCTTTTGGACCAACTCTTCCCTCCTACCTTATACCCTACTATCATATATTTCTACTCCAGTGATCATTTTCCTTCACATAATGTTTCGGAGAGCTTACAAGCATCGCTATCCAAGGCTTTGGTTTACTTTTATCCCCTCGCCGGCCGACTAAATGGCCCTGCTTCCATAGACTGCAGTGATGAAGGTGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTGTCGGACTTGCTTAAACTTCCTGAACACGGCTTACTCAACAACCTCAGCCCGGAGTTTGATCCTCAAACTGCCCATTCCGCCTTAGGTTCTGCAGTTTTGCTTGTCCAAATAAGTCGTTTTAACTGTGGAGGAATCGCTCTTGCTGTGTCGCTGTCGCACAAGATCGCAGATGCAACCTCATGTCAAATATTTGTACGAGCATGGGCAGGCATACATCGTGATCATGAATCTGATAGTCAACTAATGGTACCACAATTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTCCTTCGTAAACAATTTAGGGCTACCAAAGTACCAAAGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATTGCCACTCTCAAGGCTAAAATTGGAGGTACAAATATACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCTAAACCGGAGGCGAGTTCAAGTACAGCAGTGTTGTCGCAAATGGTAAATGTTCGTAGAAGTATGGGTTCGTTGGTAGAAAATGCCATGGGAAATTGGTTTTGGCCTCTTCAAGTGATATTCAAACCAAACGAGACGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGAAATAACAAACTTCTACAAAGAGAAGGCGGGAAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGTGAGCTTTATAGAAACACCAAGGGACGCATAAGTGTTTATAGGGCCACTAGTTTGTGCAAGCTCCCTATATATGAAATTGATTTTGGGTGGGGAAAACCAACATGGGTTACTGGCCAAAGCAACCAGAAGAACATATTTGTGTTGATTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTCGATGAAGAAGAAATGGCGATATTTGAGAGTGATGAGGCGCTCCTTTCGTTCGCTTCTCTAAATCCCAGTGCTAATGTCAATCGTCATTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

448

Amino Acids

49.79

Weight (kDa)

8.13

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 17 - 428 3.9e-71 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 592
AccB1I GGYRCC 1 cut(s) 592
AciI CCGC 2 cut(s) 423, 998
AclWI GGATC 2 cut(s) 398, 1235
AcoI YGGCCR 2 cut(s) 265, 1171
AcsI RAATTY 1 cut(s) 1004
AfaI GTAC 5 cut(s) 540, 594, 665, 739, 823
AfiI CCNNNNNNNGG 4 cut(s) 263, 346, 371, 394
AgsI TTSAA 6 cut(s) 63, 772, 819, 911, 922, 1009
AhlI ACTAGT 1 cut(s) 1106
AjuI GAANNNNNNNTTGG 4 cut(s) 883, 915, 1125, 1157
AloI GAACNNNNNNTCC 2 cut(s) 1007, 1039
AluBI AGCT 4 cut(s) 216, 343, 1063, 1120
AluI AGCT 4 cut(s) 216, 343, 1063, 1120
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 2 cut(s) 90, 926
AlwI GGATC 2 cut(s) 398, 1235
AoxI GGCC 6 cut(s) 265, 277, 324, 902, 1101, 1171
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 1 cut(s) 1004
Asp718I GGTACC 1 cut(s) 592
AspLEI GCGC 1 cut(s) 1288
AspS9I GGNCC 4 cut(s) 130, 278, 325, 1101
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 5 cut(s) 15, 92, 1042, 1070, 1252
AvaII GGWCC 1 cut(s) 130
AxyI CCTNAGG 1 cut(s) 427
BaeI ACNNNNGTAYC 2 cut(s) 647, 680
BalI TGGCCA 1 cut(s) 1173
BanI GGYRCC 1 cut(s) 592
BauI CACGAG 1 cut(s) 780
Bbv12I GWGCWC 1 cut(s) 781
BbvCI CCTCAGC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 772
BccI CCATC 2 cut(s) 1013, 1217
BceAI ACGGC 1 cut(s) 388
BcgI CGANNNNNNTGC 2 cut(s) 816, 850
BclI TGATCA 2 cut(s) 184, 565
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 2 cut(s) 90, 926
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 2 cut(s) 681, 1107
BfmI CTRYAG 2 cut(s) 295, 435
BfoI RGCGCY 1 cut(s) 1289
BisI GCNGC 1 cut(s) 786
BlsI GCNGC 1 cut(s) 787
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 4 cut(s) 130, 278, 325, 1101
BmiI GGNNCC 1 cut(s) 594
BmrFI CCNGG 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 1308
BmsI GCATC 3 cut(s) 233, 505, 620
BmuI ACTGGG 1 cut(s) 1308
BoxI GACNNNNGTC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 163
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 2 cut(s) 341, 704
BpuMI CCSGG 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 15, 234, 885, 1077
BsaWI WCCGGW 1 cut(s) 805
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 346, 371, 394
Bse118I RCCGGY 2 cut(s) 263, 622
Bse1I ACTGG 4 cut(s) 51, 180, 1174, 1314
Bse21I CCTNAGG 1 cut(s) 427
BseDI CCNNGG 4 cut(s) 15, 234, 885, 1077
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 263, 346, 371, 394
BseMII CTCAG 2 cut(s) 403, 1029
BseNI ACTGG 4 cut(s) 51, 180, 1174, 1314
BseRI GAGGAG 2 cut(s) 84, 979
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 6 cut(s) 267, 279, 326, 904, 1103, 1173
BshNI GGYRCC 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 781
BsiSI CCGG 4 cut(s) 264, 395, 623, 806
BslFI GGGAC 1 cut(s) 1095
BslI CCNNNNNNNGG 4 cut(s) 263, 346, 371, 394
BsmAI GTCTC 2 cut(s) 90, 926
BsmBI CGTCTC 2 cut(s) 90, 926
BsmFI GGGAC 1 cut(s) 1095
BsmI GAATGC 1 cut(s) 40
BsnI GGCC 6 cut(s) 267, 279, 326, 904, 1103, 1173
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
Bsp19I CCATGG 2 cut(s) 15, 885
BspACI CCGC 2 cut(s) 423, 998
BspANI GGCC 6 cut(s) 267, 279, 326, 904, 1103, 1173
BspCNI CTCAG 2 cut(s) 402, 1030
BspHI TCATGA 1 cut(s) 568
BspLI GGNNCC 1 cut(s) 594
BspMAI CTGCAG 2 cut(s) 299, 439
BspPI GGATC 2 cut(s) 398, 1235
BspT107I GGYRCC 1 cut(s) 592
BsrFI RCCGGY 2 cut(s) 263, 622
BsrI ACTGG 4 cut(s) 51, 180, 1174, 1314
BssAI RCCGGY 2 cut(s) 263, 622
BssECI CCNNGG 4 cut(s) 15, 234, 885, 1077
BssMI GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 4 cut(s) 15, 234, 885, 1077
Bst2BI CACGAG 1 cut(s) 780
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 2 cut(s) 143, 912
BstC8I GCNNGC 6 cut(s) 38, 265, 341, 553, 624, 1118
BstDEI CTNAG 3 cut(s) 389, 427, 1038
BstDSI CCRYGG 2 cut(s) 15, 885
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 1289
BstHHI GCGC 1 cut(s) 1288
BstKTI GATC 6 cut(s) 72, 187, 406, 510, 568, 1230
BstMAI GTCTC 2 cut(s) 90, 926
BstMBI GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 422, 785
BstNSI RCATGY 1 cut(s) 36
BstPAI GACNNNNGTC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 2 cut(s) 295, 435
BstV1I GCAGC 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 241
BstZI CGGCCG 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 427
BsuRI GGCC 6 cut(s) 267, 279, 326, 904, 1103, 1173
BtgI CCRYGG 2 cut(s) 15, 885
BtgZI GCGATG 2 cut(s) 210, 1236
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 304, 834
BtsIMutI CAGTG 5 cut(s) 44, 187, 304, 834, 1321
Cac8I GCNNGC 6 cut(s) 38, 265, 341, 553, 624, 1118
CciI TCATGA 1 cut(s) 568
CfoI GCGC 1 cut(s) 1288
Cfr10I RCCGGY 2 cut(s) 263, 622
Cfr13I GGNCC 4 cut(s) 130, 278, 325, 1101
CseI GACGC 1 cut(s) 1092
Csp6I GTAC 5 cut(s) 539, 593, 664, 738, 822
CviAII CATG 9 cut(s) 16, 33, 525, 546, 569, 886, 944, 1161, 1236
CviQI GTAC 5 cut(s) 539, 593, 664, 738, 822
DdeI CTNAG 3 cut(s) 389, 427, 1038
DpnI GATC 6 cut(s) 71, 186, 405, 509, 567, 1229
DpnII GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
EaeI YGGCCR 2 cut(s) 265, 1171
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 2 cut(s) 143, 912
EarI CTCTTC 2 cut(s) 143, 912
EciI GGCGGA 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 4 cut(s) 15, 234, 885, 1077
Eco47I GGWCC 1 cut(s) 130
Eco52I CGGCCG 1 cut(s) 265
Eco81I CCTNAGG 1 cut(s) 427
EcoT14I CCWWGG 4 cut(s) 15, 234, 885, 1077
ErhI CCWWGG 4 cut(s) 15, 234, 885, 1077
Esp3I CGTCTC 2 cut(s) 90, 926
FaeI CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
FaqI GGGAC 1 cut(s) 1095
FatI CATG 9 cut(s) 15, 32, 524, 545, 568, 885, 943, 1160, 1235
FauI CCCGC 1 cut(s) 991
FbaI TGATCA 2 cut(s) 184, 565
Fnu4HI GCNGC 1 cut(s) 786
Fsp4HI GCNGC 1 cut(s) 786
FspBI CTAG 2 cut(s) 681, 1107
GlaI GCGC 1 cut(s) 1287
GluI GCNGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 1289
HaeIII GGCC 6 cut(s) 267, 279, 326, 904, 1103, 1173
HapII CCGG 4 cut(s) 264, 395, 623, 806
HgaI GACGC 1 cut(s) 1092
HhaI GCGC 1 cut(s) 1288
Hin1II CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
Hin6I GCGC 1 cut(s) 1286
HinP1I GCGC 1 cut(s) 1286
HincII GTYRAC 2 cut(s) 334, 584
HindII GTYRAC 2 cut(s) 334, 584
HinfI GANTC 4 cut(s) 477, 572, 632, 1040
HpaII CCGG 4 cut(s) 264, 395, 623, 806
HphI GGTGA 5 cut(s) 15, 92, 1042, 1070, 1252
Hpy166II GTNNAC 5 cut(s) 23, 247, 334, 584, 643
Hpy188I TCNGA 4 cut(s) 211, 349, 577, 1039
Hpy188III TCNNGA 7 cut(s) 63, 320, 365, 563, 569, 703, 769
Hpy8I GTNNAC 5 cut(s) 23, 247, 334, 584, 643
HpyAV CCTTC 4 cut(s) 204, 299, 646, 988
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 1216
HpyCH4V TGCA 5 cut(s) 36, 297, 437, 518, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 785
HpyF3I CTNAG 3 cut(s) 389, 427, 1038
HpySE526I ACGT 1 cut(s) 1216
Hsp92II CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
HspAI GCGC 1 cut(s) 1286
KpnI GGTACC 1 cut(s) 596
KroI GCCGGC 2 cut(s) 263, 622
KroNI GCCGGC 2 cut(s) 265, 624
Ksp22I TGATCA 2 cut(s) 184, 565
Kzo9I GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
LmnI GCTCC 3 cut(s) 608, 1125, 1293
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 3 cut(s) 233, 505, 620
MaeI CTAG 2 cut(s) 681, 1107
MaeII ACGT 1 cut(s) 1216
MaeIII GTNAC 3 cut(s) 700, 1165, 1240
MalI GATC 6 cut(s) 71, 186, 405, 509, 567, 1229
MboI GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
MboII GAAGA 7 cut(s) 130, 718, 899, 1028, 1198, 1265, 1268
MhlI GDGCHC 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 1173
MluCI AATT 6 cut(s) 599, 646, 729, 892, 1004, 1134
MluNI TGGCCA 1 cut(s) 1173
MlyI GAGTC 2 cut(s) 626, 1049
MmeI TCCRAC 2 cut(s) 113, 327
Mox20I TGGCCA 1 cut(s) 1173
MroNI GCCGGC 2 cut(s) 263, 622
MscI TGGCCA 1 cut(s) 1173
MseI TTAA 4 cut(s) 357, 465, 603, 674
MslI CAYNNNNRTG 1 cut(s) 1196
Msp20I TGGCCA 1 cut(s) 1173
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 4 cut(s) 264, 395, 623, 806
MspR9I CCNGG 1 cut(s) 395
Mva1269I GAATGC 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 422, 785
NaeI GCCGGC 2 cut(s) 265, 624
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 2 cut(s) 15, 885
NdeII GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
NgoMIV GCCGGC 2 cut(s) 263, 622
NlaIII CATG 9 cut(s) 19, 36, 528, 549, 572, 889, 947, 1164, 1239
NlaIV GGNNCC 1 cut(s) 594
NmuCI GTSAC 2 cut(s) 700, 1240
NspI RCATGY 1 cut(s) 36
PagI TCATGA 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 1336
PctI GAATGC 1 cut(s) 40
PdiI GCCGGC 2 cut(s) 265, 624
PfeI GAWTC 2 cut(s) 477, 572
PkrI GCNGC 1 cut(s) 787
PleI GAGTC 2 cut(s) 626, 1048
PpsI GAGTC 2 cut(s) 626, 1048
PshAI GACNNNNGTC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 594
PspPI GGNCC 4 cut(s) 130, 278, 325, 1101
PsrI GAACNNNNNNTAC 2 cut(s) 360, 392
PstI CTGCAG 2 cut(s) 299, 439
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 5 cut(s) 540, 594, 665, 739, 823
RsaNI GTAC 5 cut(s) 539, 593, 664, 738, 822
RseI CAYNNNNRTG 1 cut(s) 1196
SaqAI TTAA 4 cut(s) 357, 465, 603, 674
SatI GCNGC 1 cut(s) 786
Sau3AI GATC 6 cut(s) 69, 184, 403, 507, 565, 1227
Sau96I GGNCC 4 cut(s) 130, 278, 325, 1101
SchI GAGTC 2 cut(s) 626, 1049
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 3 cut(s) 233, 505, 620
SfcI CTRYAG 2 cut(s) 295, 435
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 2 cut(s) 320, 719
SmoI CTYRAG 2 cut(s) 320, 719
SpeI ACTAGT 1 cut(s) 1106
Sse9I AATT 6 cut(s) 599, 646, 729, 892, 1004, 1134
SsiI CCGC 2 cut(s) 423, 998
SspI AATATT 1 cut(s) 534
SspMI CTAG 2 cut(s) 681, 1107
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 4 cut(s) 15, 234, 885, 1077
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 1219
TaqI TCGA 2 cut(s) 1230, 1248
TasI AATT 6 cut(s) 599, 646, 729, 892, 1004, 1134
TatI WGTACW 1 cut(s) 821
TfiI GAWTC 2 cut(s) 477, 572
Tru1I TTAA 4 cut(s) 357, 465, 603, 674
Tru9I TTAA 4 cut(s) 357, 465, 603, 674
TscAI CASTG 5 cut(s) 51, 187, 304, 834, 1321
TseFI GTSAC 2 cut(s) 700, 1240
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 2 cut(s) 700, 1240
TspDTI ATGAA 4 cut(s) 318, 585, 1146, 1266
TspGWI ACGGA 2 cut(s) 621, 950
TspRI CASTG 5 cut(s) 51, 187, 304, 834, 1321
VpaK11BI GGWCC 1 cut(s) 130
XapI RAATTY 1 cut(s) 1004
XceI RCATGY 1 cut(s) 36
XspI CTAG 2 cut(s) 681, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.