RchiOBHm_Chr1g0325581

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000722
Physical Location & Seq
Reverse (-)
13575619 .. 13576965
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55529

Sequence Viewer

Length: 1347 bp
ATGGGTTCACCAGCAACATGCACCCAGTCACTGGTAAATATCACCTCAAGAAAGATCATTAGACCCTCGTCTCCAACTCCTCATCACCAAAGAACTCTCAACCTCTCTCTTTTGGACCAAATCTTCCCTCCTACCTTATACCCTGCCATCATATATTTCTACTCCAGTGATCATTTTCCTTCAAATGATGTTTCGGAGAGCTTACAAAGATCGCTGTCTAAGGCTTTGGTTCAATTTTATCCCCTGGCCGGCCGACTAAATGGCCCTGCTTCCGTCGACTGCAATGATGAAGGGGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTCTTGGACTTGCTTAAACTTCCTGAACACAGCTTACTCAACAACCTCATCCCGGAGTTTGATCCTCAAACTGCCCATTCCGCTTTAGGTTCTGCAGTTTTGCTTGTCCAAATGAGTCGTTTTAACTGCGGAGGAATCGCCCTTGCTGTGTCGCTGTCGCACAAGATCGCAGATGGAACCTCATATCAAATATTTGTACGAGCATGGGCAGACATACATCGTGACCATGAATATGAGAGTCAACTAATGGTACCACAGTTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTACTTTGTAAACAACTTAGGGTTACCAAAGTGGTTGCCAGAGTATCAAGGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATTGCCAATCTCAAGGCTAAAATTGGAGGTACAAATGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCCAAGCCAGAGACGAGTTCAACTACAACAGTGTTGTCGCAAGCGGTAAGTTTCCGTAGAAGTATGGGTTCGGTAGTAGGGGAAAATGCCATGGGAAATTGGTTTTGGCCAGTTCAAGTGGTATTCAAACCAAACGAGATGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGACATAACAGACTTCTACAACGAAAAGGCCGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTTGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGATGCATCAGTGTTTATAGGGCCACAAGTTTGTGCAAGCTCCCTGTATATGAAGTTGATTTTGGGTGGGGGAAACCAACATGGGTTACTGGCCAAAGCAACCAGAAGAACGTATTTGTGCTGTTTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTTGATGAAGAAGATATGGCCATATTTGAGACTGATAAGGAGCTTCTTTCATTCGCTTCTCTAAACCCTAGTGCTAGTGTCAATCATCACTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

448

Amino Acids

50.07

Weight (kDa)

6.43

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 430 2.2e-74 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 577
AccB7I CCANNNNNTGG 2 cut(s) 31, 331
AccI GTMKAC 1 cut(s) 276
AciI CCGC 3 cut(s) 408, 456, 839
AclWI GGATC 2 cut(s) 383, 1235
AcoI YGGCCR 5 cut(s) 246, 250, 902, 1171, 1263
AcsI RAATTY 1 cut(s) 1004
AfaI GTAC 4 cut(s) 525, 579, 736, 744
AfiI CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
AgsI TTSAA 7 cut(s) 183, 233, 769, 816, 911, 922, 1009
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 4 cut(s) 883, 915, 1125, 1157
AloI GAACNNNNNNTCC 2 cut(s) 1007, 1039
AluBI AGCT 6 cut(s) 201, 328, 360, 1063, 1120, 1288
AluI AGCT 6 cut(s) 201, 328, 360, 1063, 1120, 1288
Alw21I GWGCWC 1 cut(s) 778
Alw26I GTCTC 4 cut(s) 75, 800, 963, 1268
AlwI GGATC 2 cut(s) 383, 1235
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 9 cut(s) 246, 250, 262, 309, 902, 996, 1101, 1171, 1263
ApeKI GCWGC 1 cut(s) 782
ApoI RAATTY 1 cut(s) 1004
Asp718I GGTACC 1 cut(s) 577
AspS9I GGNCC 4 cut(s) 115, 263, 310, 1101
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 4 cut(s) 34, 77, 1042, 1252
AvaII GGWCC 1 cut(s) 115
BaeI ACNNNNGTAYC 4 cut(s) 569, 602, 726, 759
BalI TGGCCA 3 cut(s) 904, 1173, 1265
BanI GGYRCC 1 cut(s) 577
BauI CACGAG 1 cut(s) 777
Bbv12I GWGCWC 1 cut(s) 778
BbvI GCAGC 1 cut(s) 769
BccI CCATC 5 cut(s) 155, 494, 928, 1013, 1217
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 4 cut(s) 75, 800, 963, 1268
BfaI CTAG 3 cut(s) 678, 1314, 1320
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 1 cut(s) 783
BlsI GCNGC 1 cut(s) 784
Bme1390I CCNGG 2 cut(s) 245, 380
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 4 cut(s) 115, 263, 310, 1101
BmiI GGNNCC 2 cut(s) 505, 579
BmrFI CCNGG 2 cut(s) 245, 380
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 3 cut(s) 605, 1073, 1095
BmuI ACTGGG 1 cut(s) 19
BoxI GACNNNNGTC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 3 cut(s) 31, 326, 701
BpuMI CCSGG 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 243, 885, 1077
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
Bse118I RCCGGY 3 cut(s) 248, 607, 998
Bse1I ACTGG 5 cut(s) 25, 36, 165, 905, 1174
Bse3DI GCAATG 1 cut(s) 289
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 243, 885, 1077
BseGI GGATG 2 cut(s) 375, 1088
BseLI CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
BseMI GCAATG 1 cut(s) 289
BseMII CTCAG 1 cut(s) 1029
BseNI ACTGG 5 cut(s) 25, 36, 165, 905, 1174
BseRI GAGGAG 2 cut(s) 69, 979
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 769
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 9 cut(s) 248, 252, 264, 311, 904, 998, 1103, 1173, 1265
BshNI GGYRCC 1 cut(s) 577
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 778
BsiSI CCGG 4 cut(s) 249, 380, 608, 999
BslI CCNNNNNNNGG 4 cut(s) 31, 248, 331, 379
BsmAI GTCTC 4 cut(s) 75, 800, 963, 1268
BsmBI CGTCTC 2 cut(s) 75, 800
BsnI GGCC 9 cut(s) 248, 252, 264, 311, 904, 998, 1103, 1173, 1265
Bsp1286I GDGCHC 1 cut(s) 778
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
Bsp19I CCATGG 1 cut(s) 885
BspACI CCGC 3 cut(s) 408, 456, 839
BspANI GGCC 9 cut(s) 248, 252, 264, 311, 904, 998, 1103, 1173, 1265
BspCNI CTCAG 1 cut(s) 1030
BspLI GGNNCC 2 cut(s) 505, 579
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 2 cut(s) 383, 1235
BspT107I GGYRCC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 289
BsrFI RCCGGY 3 cut(s) 248, 607, 998
BsrGI TGTACA 1 cut(s) 742
BsrI ACTGG 5 cut(s) 25, 36, 165, 905, 1174
BssAI RCCGGY 3 cut(s) 248, 607, 998
BssECI CCNNGG 3 cut(s) 243, 885, 1077
BssMI GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 2 cut(s) 885, 1077
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 585, 826
BstAUI TGTACA 1 cut(s) 742
BstC8I GCNNGC 7 cut(s) 250, 326, 609, 837, 1000, 1061, 1118
BstDEI CTNAG 3 cut(s) 219, 634, 1038
BstDSI CCRYGG 1 cut(s) 885
BstEII GGTNACC 1 cut(s) 639
BstF5I GGATG 2 cut(s) 375, 1088
BstKTI GATC 6 cut(s) 57, 172, 212, 391, 495, 1230
BstMAI GTCTC 4 cut(s) 75, 800, 963, 1268
BstMBI GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 407, 782
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 67
BstPI GGTNACC 1 cut(s) 639
BstSCI CCNGG 2 cut(s) 243, 378
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 769
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 9 cut(s) 248, 252, 264, 311, 904, 998, 1103, 1173, 1265
BtgI CCRYGG 1 cut(s) 885
BtgZI GCGATG 1 cut(s) 1236
BtsCI GGATG 2 cut(s) 375, 1088
BtsIMutI CAGTG 4 cut(s) 29, 172, 831, 1096
Cac8I GCNNGC 7 cut(s) 250, 326, 609, 837, 1000, 1061, 1118
CaiI CAGNNNCTG 1 cut(s) 31
Cfr10I RCCGGY 3 cut(s) 248, 607, 998
Cfr13I GGNCC 4 cut(s) 115, 263, 310, 1101
Csp6I GTAC 4 cut(s) 524, 578, 735, 743
CviAII CATG 7 cut(s) 18, 531, 554, 886, 944, 1161, 1236
CviQI GTAC 4 cut(s) 524, 578, 735, 743
DdeI CTNAG 3 cut(s) 219, 634, 1038
DpnI GATC 6 cut(s) 56, 171, 211, 390, 494, 1229
DpnII GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
EaeI YGGCCR 5 cut(s) 246, 250, 902, 1171, 1263
EagI CGGCCG 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 2 cut(s) 885, 1077
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 250
Eco91I GGTNACC 1 cut(s) 639
EcoO65I GGTNACC 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 885, 1077
EcoT22I ATGCAT 1 cut(s) 1088
ErhI CCWWGG 2 cut(s) 885, 1077
Esp3I CGTCTC 2 cut(s) 75, 800
FaeI CATG 7 cut(s) 21, 534, 557, 889, 947, 1164, 1239
FatI CATG 7 cut(s) 17, 530, 553, 885, 943, 1160, 1235
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 783
FokI GGATG 2 cut(s) 362, 1095
FseI GGCCGGCC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 783
FspBI CTAG 3 cut(s) 678, 1314, 1320
GluI GCNGC 1 cut(s) 783
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 9 cut(s) 248, 252, 264, 311, 904, 998, 1103, 1173, 1265
HapII CCGG 4 cut(s) 249, 380, 608, 999
Hin1II CATG 7 cut(s) 21, 534, 557, 889, 947, 1164, 1239
HincII GTYRAC 3 cut(s) 277, 319, 569
HindII GTYRAC 3 cut(s) 277, 319, 569
HinfI GANTC 3 cut(s) 442, 462, 565
HpaII CCGG 4 cut(s) 249, 380, 608, 999
HphI GGTGA 4 cut(s) 34, 77, 1042, 1252
Hpy166II GTNNAC 5 cut(s) 8, 277, 319, 569, 628
Hpy188I TCNGA 2 cut(s) 196, 1039
Hpy188III TCNNGA 6 cut(s) 48, 305, 350, 548, 700, 766
Hpy8I GTNNAC 5 cut(s) 8, 277, 319, 569, 628
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 189, 284
HpyCH4III ACNGT 2 cut(s) 585, 826
HpyCH4IV ACGT 2 cut(s) 1191, 1216
HpyCH4V TGCA 5 cut(s) 21, 282, 422, 1086, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 782
HpyF3I CTNAG 3 cut(s) 219, 634, 1038
HpySE526I ACGT 2 cut(s) 1191, 1216
Hsp92II CATG 7 cut(s) 21, 534, 557, 889, 947, 1164, 1239
KpnI GGTACC 1 cut(s) 581
KroI GCCGGC 3 cut(s) 248, 607, 998
KroNI GCCGGC 3 cut(s) 250, 609, 1000
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
LmnI GCTCC 3 cut(s) 593, 1125, 1285
Lsp1109I GCAGC 1 cut(s) 769
LweI GCATC 3 cut(s) 605, 1073, 1095
MaeI CTAG 3 cut(s) 678, 1314, 1320
MaeII ACGT 2 cut(s) 1191, 1216
MaeIII GTNAC 6 cut(s) 27, 548, 639, 697, 1165, 1240
MalI GATC 6 cut(s) 56, 171, 211, 390, 494, 1229
MboI GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
MboII GAAGA 6 cut(s) 115, 715, 1028, 1198, 1265, 1268
MhlI GDGCHC 1 cut(s) 778
MlsI TGGCCA 3 cut(s) 904, 1173, 1265
MluCI AATT 4 cut(s) 233, 726, 892, 1004
MluNI TGGCCA 3 cut(s) 904, 1173, 1265
MlyI GAGTC 2 cut(s) 451, 574
MmeI TCCRAC 1 cut(s) 98
Mox20I TGGCCA 3 cut(s) 904, 1173, 1265
Mph1103I ATGCAT 1 cut(s) 1088
MroNI GCCGGC 3 cut(s) 248, 607, 998
MscI TGGCCA 3 cut(s) 904, 1173, 1265
MseI TTAA 4 cut(s) 342, 450, 588, 671
MslI CAYNNNNRTG 1 cut(s) 558
Msp20I TGGCCA 3 cut(s) 904, 1173, 1265
MspI CCGG 4 cut(s) 249, 380, 608, 999
MspR9I CCNGG 2 cut(s) 245, 380
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 2 cut(s) 407, 782
NaeI GCCGGC 3 cut(s) 250, 609, 1000
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 1 cut(s) 885
NdeII GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
NgoMIV GCCGGC 3 cut(s) 248, 607, 998
NlaIII CATG 7 cut(s) 21, 534, 557, 889, 947, 1164, 1239
NlaIV GGNNCC 2 cut(s) 505, 579
NmuCI GTSAC 4 cut(s) 27, 548, 697, 1240
NsiI ATGCAT 1 cut(s) 1088
NspI RCATGY 1 cut(s) 21
PdiI GCCGGC 3 cut(s) 250, 609, 1000
PfeI GAWTC 1 cut(s) 462
PflMI CCANNNNNTGG 2 cut(s) 31, 331
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 1 cut(s) 784
PleI GAGTC 2 cut(s) 450, 573
PpsI GAGTC 2 cut(s) 450, 573
PshAI GACNNNNGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 243
PspEI GGTNACC 1 cut(s) 639
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 505, 579
PspPI GGNCC 4 cut(s) 115, 263, 310, 1101
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
PstI CTGCAG 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 31
RigI GGCCGGCC 1 cut(s) 252
RsaI GTAC 4 cut(s) 525, 579, 736, 744
RsaNI GTAC 4 cut(s) 524, 578, 735, 743
RseI CAYNNNNRTG 1 cut(s) 558
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 4 cut(s) 342, 450, 588, 671
SatI GCNGC 1 cut(s) 783
Sau3AI GATC 6 cut(s) 54, 169, 209, 388, 492, 1227
Sau96I GGNCC 4 cut(s) 115, 263, 310, 1101
SchI GAGTC 2 cut(s) 451, 574
ScrFI CCNGG 2 cut(s) 245, 380
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 3 cut(s) 605, 1073, 1095
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 558
SmlI CTYRAG 3 cut(s) 46, 305, 716
SmoI CTYRAG 3 cut(s) 46, 305, 716
Sse9I AATT 4 cut(s) 233, 726, 892, 1004
SsiI CCGC 3 cut(s) 408, 456, 839
SspI AATATT 1 cut(s) 519
SspMI CTAG 3 cut(s) 678, 1314, 1320
StyD4I CCNGG 2 cut(s) 243, 378
StyI CCWWGG 2 cut(s) 885, 1077
TaaI ACNGT 2 cut(s) 585, 826
TaiI ACGT 2 cut(s) 1194, 1219
TaqI TCGA 2 cut(s) 276, 1230
TasI AATT 4 cut(s) 233, 726, 892, 1004
TatI WGTACW 1 cut(s) 742
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 4 cut(s) 342, 450, 588, 671
Tru9I TTAA 4 cut(s) 342, 450, 588, 671
TscAI CASTG 4 cut(s) 36, 172, 831, 1096
TseFI GTSAC 4 cut(s) 27, 548, 697, 1240
TseI GCWGC 1 cut(s) 782
Tsp45I GTSAC 4 cut(s) 27, 548, 697, 1240
TspDTI ATGAA 5 cut(s) 303, 570, 1146, 1266, 1284
TspGWI ACGGA 3 cut(s) 262, 606, 839
TspRI CASTG 4 cut(s) 36, 172, 831, 1096
Van91I CCANNNNNTGG 2 cut(s) 31, 331
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 1004
XceI RCATGY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 3 cut(s) 678, 1314, 1320
Zsp2I ATGCAT 1 cut(s) 1088
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.