RLG00000002570

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000722
Physical Location & Seq
Forward (+)
36475919 .. 36478300
2382 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002570

Sequence Viewer

Length: 828 bp
ATGCACTTCTTCTTGGGACCACTCCCAACTCAAACTTTAACCACAAGAAGGTTCGTGTTTGATGTGTCAAAGATGGCAAGTCTCAAGGCTGAAATTGGGAGTAGAATCCAAAAGTTCACCCCGATGAACGGACAACTCGTTCTGGCAATCATCTTAAACTGTGCTCTTGCTGCTTCTCATCAATCCAAGCCTGATGGAGATACTACTTCAAGGCTAATAGTATTGTCCCAAATGGTAAACTTGCGAAGAAGAATGGTACCAGAATTACCCGAAAACGAAATGGGGAACTGGTTTTGGGCACTTTCCTTGTTATTCAAAGAAAATGAGACAGAAATACACGAGTTGGTGATCAATATGAATAAAGGATTGACAAACTTTTGCAAGGAGAAAGCAAACAGATTTAAAGGTGACGACGGATTCTTGGTGGTGTCTGAGTCTATGAGAGAAAAGGCTAATCTTTATAAAGCAGAAAAGGGCATCAACCTCTATAGGAGCACAAGTGTGTGCAAGTTCCCTCTGTATGAAATCGATTTCGGGTGGGGGAAACCTACCTGGGTTTCTAGCCCAAGCGAACACAAAAACTTTATTTTGCTGCTAGATACAAAAAATGGTGATGGTATTGAAGCTTGGGTGACACTTGATCAACAAGAAATGGCCATTTTTGAGTGTGACGAGGAGCTTCTTGCATTTAGCTCCGTTAATCCCAGCGTTGATCCTGGATCTATTATTGCTGATAAGGCTGCTATTGGAAATTTGTTGGGTGGCATTGGCTATTTCTTTGGCCAGTCAAAAATTGCCCTCCCTAGGGATGTGAATGCAAGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

276

Amino Acids

30.8

Weight (kDa)

6.0

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 227 4e-25 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
Acc65I GGTACC 1 cut(s) 256
AccB1I GGYRCC 1 cut(s) 256
AclWI GGATC 2 cut(s) 707, 727
AcoI YGGCCR 2 cut(s) 654, 781
AcsI RAATTY 1 cut(s) 751
AfaI GTAC 1 cut(s) 258
AfiI CCNNNNNNNGG 4 cut(s) 48, 128, 804, 805
AgsI TTSAA 3 cut(s) 210, 316, 623
AjnI CCWGG 2 cut(s) 551, 715
AleI CACNNNNGTG 1 cut(s) 500
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 3 cut(s) 626, 679, 693
AluI AGCT 3 cut(s) 626, 679, 693
Alw21I GWGCWC 2 cut(s) 166, 497
Alw26I GTCTC 2 cut(s) 86, 320
AlwI GGATC 2 cut(s) 707, 727
AoxI GGCC 2 cut(s) 654, 781
ApeKI GCWGC 3 cut(s) 170, 592, 740
ApoI RAATTY 1 cut(s) 751
Asp718I GGTACC 1 cut(s) 256
AspA2I CCTAGG 1 cut(s) 803
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 5 cut(s) 109, 358, 419, 623, 643
AvaII GGWCC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 803
BaeGI GKGCMC 1 cut(s) 301
BalI TGGCCA 2 cut(s) 656, 783
BanI GGYRCC 1 cut(s) 256
BauI CACGAG 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 166, 497
BbvI GCAGC 3 cut(s) 157, 579, 727
BccI CCATC 3 cut(s) 67, 188, 608
BciT130I CCWGG 2 cut(s) 553, 717
BclI TGATCA 2 cut(s) 348, 640
BcoDI GTCTC 2 cut(s) 86, 320
BfaI CTAG 3 cut(s) 561, 596, 804
BfmI CTRYAG 1 cut(s) 487
BisI GCNGC 3 cut(s) 171, 593, 741
BlnI CCTAGG 1 cut(s) 803
BlsI GCNGC 3 cut(s) 172, 594, 742
Bme1390I CCNGG 2 cut(s) 553, 717
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 18, 258
BmrFI CCNGG 2 cut(s) 553, 717
BmsI GCATC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 528
BsaJI CCNNGG 2 cut(s) 552, 803
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 128, 804, 805
Bse1I ACTGG 2 cut(s) 293, 784
BseBI CCWGG 2 cut(s) 553, 717
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 552, 803
BseGI GGATG 1 cut(s) 814
BseLI CCNNNNNNNGG 4 cut(s) 48, 128, 804, 805
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 2 cut(s) 293, 784
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 3 cut(s) 157, 579, 727
BseYI CCCAGC 1 cut(s) 704
BshFI GGCC 2 cut(s) 656, 783
BshNI GGYRCC 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 166, 497
BslFI GGGAC 2 cut(s) 30, 211
BslI CCNNNNNNNGG 4 cut(s) 48, 128, 804, 805
BsmAI GTCTC 2 cut(s) 86, 320
BsmFI GGGAC 2 cut(s) 30, 211
BsmI GAATGC 1 cut(s) 820
BsnI GGCC 2 cut(s) 656, 783
Bsp1286I GDGCHC 3 cut(s) 166, 301, 497
Bsp143I GATC 4 cut(s) 348, 640, 712, 719
BspANI GGCC 2 cut(s) 656, 783
BspCNI CTCAG 1 cut(s) 424
BspDI ATCGAT 1 cut(s) 528
BspLI GGNNCC 2 cut(s) 18, 258
BspPI GGATC 2 cut(s) 707, 727
BspT107I GGYRCC 1 cut(s) 256
BsrI ACTGG 2 cut(s) 293, 784
BssECI CCNNGG 2 cut(s) 552, 803
BssMI GATC 4 cut(s) 348, 640, 712, 719
BssSI CACGAG 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 803
Bst2BI CACGAG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 553, 717
Bst4CI ACNGT 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 1 cut(s) 814
BstKTI GATC 4 cut(s) 351, 643, 715, 722
BstMAI GTCTC 2 cut(s) 86, 320
BstMBI GATC 4 cut(s) 348, 640, 712, 719
BstMWI GCNNNNNNNGC 2 cut(s) 170, 737
BstNI CCWGG 2 cut(s) 553, 717
BstSCI CCNGG 2 cut(s) 551, 715
BstSFI CTRYAG 1 cut(s) 487
BstSLI GKGCMC 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 157, 579, 727
BstX2I RGATCY 1 cut(s) 719
BstYI RGATCY 1 cut(s) 719
Bsu15I ATCGAT 1 cut(s) 528
BsuRI GGCC 2 cut(s) 656, 783
BsuTUI ATCGAT 1 cut(s) 528
BtsCI GGATG 1 cut(s) 814
Cfr13I GGNCC 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 528
Csp6I GTAC 1 cut(s) 257
CviQI GTAC 1 cut(s) 257
DdeI CTNAG 1 cut(s) 432
DpnI GATC 4 cut(s) 350, 642, 714, 721
DpnII GATC 4 cut(s) 348, 640, 712, 719
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 654, 781
Eco130I CCWWGG 1 cut(s) 803
Eco47I GGWCC 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 551, 715
EcoT14I CCWWGG 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 803
FaiI YATR 5 cut(s) 356, 440, 462, 489, 522
FaqI GGGAC 2 cut(s) 30, 211
FbaI TGATCA 2 cut(s) 348, 640
Fnu4HI GCNGC 3 cut(s) 171, 593, 741
FokI GGATG 1 cut(s) 821
Fsp4HI GCNGC 3 cut(s) 171, 593, 741
FspBI CTAG 3 cut(s) 561, 596, 804
GluI GCNGC 3 cut(s) 171, 593, 741
GsaI CCCAGC 1 cut(s) 708
HaeIII GGCC 2 cut(s) 656, 783
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 3 cut(s) 105, 417, 434
HphI GGTGA 5 cut(s) 109, 358, 419, 623, 643
Hpy166II GTNNAC 2 cut(s) 117, 238
Hpy188I TCNGA 1 cut(s) 433
Hpy8I GTNNAC 2 cut(s) 117, 238
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 5 cut(s) 4, 381, 507, 686, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 737
HpyF3I CTNAG 1 cut(s) 432
KpnI GGTACC 1 cut(s) 260
Ksp22I TGATCA 2 cut(s) 348, 640
Kzo9I GATC 4 cut(s) 348, 640, 712, 719
LmnI GCTCC 3 cut(s) 492, 676, 698
Lsp1109I GCAGC 3 cut(s) 157, 579, 727
LweI GCATC 1 cut(s) 486
MaeI CTAG 3 cut(s) 561, 596, 804
MaeIII GTNAC 3 cut(s) 407, 631, 668
MalI GATC 4 cut(s) 350, 642, 714, 721
MboI GATC 4 cut(s) 348, 640, 712, 719
MboII GAAGA 2 cut(s) 258, 261
MflI RGATCY 1 cut(s) 719
MhlI GDGCHC 3 cut(s) 166, 301, 497
MlsI TGGCCA 2 cut(s) 656, 783
MluCI AATT 4 cut(s) 93, 263, 751, 792
MluNI TGGCCA 2 cut(s) 656, 783
MlyI GAGTC 1 cut(s) 443
MnlI CCTC 4 cut(s) 494, 525, 667, 809
Mox20I TGGCCA 2 cut(s) 656, 783
MscI TGGCCA 2 cut(s) 656, 783
MseI TTAA 4 cut(s) 38, 155, 402, 699
MslI CAYNNNNRTG 2 cut(s) 122, 500
Msp20I TGGCCA 2 cut(s) 656, 783
MspR9I CCNGG 2 cut(s) 553, 717
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 2 cut(s) 553, 717
MwoI GCNNNNNNNGC 2 cut(s) 170, 737
NdeII GATC 4 cut(s) 348, 640, 712, 719
NlaIV GGNNCC 2 cut(s) 18, 258
NmuCI GTSAC 3 cut(s) 407, 631, 668
OliI CACNNNNGTG 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 1 cut(s) 820
PfeI GAWTC 2 cut(s) 105, 417
PfoI TCCNGGA 1 cut(s) 715
PkrI GCNGC 3 cut(s) 172, 594, 742
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PsiI TTATAA 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 551, 715
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 2 cut(s) 551, 715
PspN4I GGNNCC 2 cut(s) 18, 258
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 719
RsaI GTAC 1 cut(s) 258
RsaNI GTAC 1 cut(s) 257
RseI CAYNNNNRTG 2 cut(s) 122, 500
SaqAI TTAA 4 cut(s) 38, 155, 402, 699
SatI GCNGC 3 cut(s) 171, 593, 741
Sau3AI GATC 4 cut(s) 348, 640, 712, 719
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 2 cut(s) 553, 717
SduI GDGCHC 3 cut(s) 166, 301, 497
SetI ASST 8 cut(s) 53, 409, 486, 550, 554, 628, 681, 695
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 487
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 2 cut(s) 122, 500
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 4 cut(s) 93, 263, 751, 792
SspMI CTAG 3 cut(s) 561, 596, 804
StyD4I CCNGG 2 cut(s) 551, 715
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 528
TasI AATT 4 cut(s) 93, 263, 751, 792
TfiI GAWTC 2 cut(s) 105, 417
Tru1I TTAA 4 cut(s) 38, 155, 402, 699
Tru9I TTAA 4 cut(s) 38, 155, 402, 699
TseFI GTSAC 3 cut(s) 407, 631, 668
TseI GCWGC 3 cut(s) 170, 592, 740
Tsp45I GTSAC 3 cut(s) 407, 631, 668
TspDTI ATGAA 3 cut(s) 140, 371, 537
TspGWI ACGGA 3 cut(s) 144, 429, 685
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 751
XmaJI CCTAGG 1 cut(s) 803
XspI CTAG 3 cut(s) 561, 596, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.