Rroxscaffold_3G00243240

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000722
Physical Location & Seq
Forward (+)
35780616 .. 35786237
5622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243240.1

Sequence Viewer

Length: 378 bp
ATGAAGGGGTATATTTTGTTGAAGCCCGGAGTTAAGTGTCAGCTGTTAGGTTTTCTTAAACAACCTGATCCTAAGTTATTTAACCAATTCATGGCAAAACATAATTCTAAAACTGCTCGGTTAGCCTTGGGTACTTGTGTCTTGCTTGTTCAAATCAAAGTTTTCAACTGCGGAGGAATAGTTGTTGCTGTATCCCCTTTACATAAGATTGCAGATGGAACATCCCTCCACACATTTAATGGAGCAGCTATAAATCGCGGTGAGTACCATCAACTAAAAGGGTTGATAGACTTACGCAAGGAGAAAGCAAACAGATTTAAAGGTGACGGCGGATTCTTGGTAGTGTACGAGTCTATAAGAGAAAATGCTGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

125

Amino Acids

13.77

Weight (kDa)

9.71

Isoelectric Point (pI)

8.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 88 2.7e-10 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 91
AccII CGCG 1 cut(s) 258
AciI CCGC 3 cut(s) 171, 258, 330
AclWI GGATC 1 cut(s) 62
AfaI GTAC 3 cut(s) 133, 266, 347
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 22, 152, 166
AluBI AGCT 2 cut(s) 43, 248
AluI AGCT 2 cut(s) 43, 248
AlwI GGATC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 245
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 272, 335
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 209, 276
BceAI ACGGC 1 cut(s) 343
BciVI GTATCC 1 cut(s) 202
BcnI CCSGG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 258
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 91
Bsp143I GATC 2 cut(s) 67, 370
BspACI CCGC 3 cut(s) 171, 258, 330
BspFNI CGCG 1 cut(s) 258
BspPI GGATC 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 67, 370
BssT1I CCWWGG 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 2 cut(s) 70, 373
BstMBI GATC 2 cut(s) 67, 370
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 25
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 257
BsuI GTATCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 221
Csp6I GTAC 3 cut(s) 132, 265, 346
CviAII CATG 1 cut(s) 91
CviJI RGCY 4 cut(s) 25, 43, 125, 248
CviKI_1 RGCY 4 cut(s) 25, 43, 125, 248
CviQI GTAC 3 cut(s) 132, 265, 346
DdeI CTNAG 1 cut(s) 72
DpnI GATC 2 cut(s) 69, 372
DpnII GATC 2 cut(s) 67, 370
DraI TTTAAA 1 cut(s) 319
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 1 cut(s) 94
FaiI YATR 6 cut(s) 12, 92, 102, 204, 251, 356
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 246
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 94
HinfI GANTC 2 cut(s) 333, 350
HpaII CCGG 1 cut(s) 27
HphI GGTGA 2 cut(s) 272, 335
Hpy166II GTNNAC 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 67, 370
LmnI GCTCC 1 cut(s) 242
LpnPI CCDG 2 cut(s) 40, 78
Lsp1109I GCAGC 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 69, 372
MboI GATC 2 cut(s) 67, 370
MluCI AATT 2 cut(s) 86, 103
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 2 cut(s) 167, 236
MseI TTAA 5 cut(s) 33, 57, 81, 237, 318
MspA1I CMGCKG 1 cut(s) 43
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 122
NciI CCSGG 1 cut(s) 27
NdeII GATC 2 cut(s) 67, 370
NlaIII CATG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 333
PflMI CCANNNNNTGG 1 cut(s) 91
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 43
RsaI GTAC 3 cut(s) 133, 266, 347
RsaNI GTAC 3 cut(s) 132, 265, 346
SaqAI TTAA 5 cut(s) 33, 57, 81, 237, 318
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 67, 370
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 27
SetI ASST 5 cut(s) 45, 52, 67, 250, 325
Sse9I AATT 2 cut(s) 86, 103
SsiI CCGC 3 cut(s) 171, 258, 330
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 126
TasI AATT 2 cut(s) 86, 103
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 5 cut(s) 33, 57, 81, 237, 318
Tru9I TTAA 5 cut(s) 33, 57, 81, 237, 318
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 17, 79
Van91I CCANNNNNTGG 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.