RchiOBHm_Chr7g0216431

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000722
Physical Location & Seq
Reverse (-)
34000898 .. 34001497
600 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19366

Sequence Viewer

Length: 600 bp
ATGATGTTACACTTTCGAAAGTTTTTGAGACTACTTCAAAGCGCTTGCAAGCTTCTCTATCCTAAAAACTTGGTTCACTTCTATCCACTTGCTAGCTGTCTCAAAGGTACTACATCCATCGAGTGCAACAATGAAGGGGTATATTTTGTTGAAGCCCGGGTTAAGTGTCAGCTATTAGGTTTTCTTAAACAACCTAATCCTAAGTTATTTAACCAATTCATGGCAAAACATAATTCTAAAACTGCTCAGTTAGCCTTGGGTACTTGTGTCTTGCTTGTTCAAATTAGTGTTTTCAACTGCGGAGGAATAGTTGTTGCTATATCCCCTTTACATAAGATTGCAGATGGAACATCCCTCCACACATTTGTATGCTTCTGGGCGGCTATAAATCACGGTGAGTACCATCAACTAGTGCTACCAACGTTTAATGGAGCAACTTTGTTGCTGACTAAAGACTTGTCTGCCATGCACAACTTCATGGGACCGATCCCAACTCAAACTTTAACCACAAGAATGTTCATGTTTAATGTGTCAAAGATGGCAAGTCTCAAGGCTGAAATTGGTAGTAGAAGCCAAAAGTTCACCCCAACAAACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

199

Amino Acids

22.17

Weight (kDa)

9.62

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 23 - 150 1.7e-30 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 220
AciI CCGC 2 cut(s) 300, 380
AclI AACGTT 1 cut(s) 422
AclWI GGATC 1 cut(s) 481
AfaI GTAC 3 cut(s) 109, 262, 401
AfeI AGCGCT 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 220, 593
AgsI TTSAA 4 cut(s) 38, 152, 281, 295
AhlI ACTAGT 1 cut(s) 409
AluBI AGCT 3 cut(s) 52, 96, 172
AluI AGCT 3 cut(s) 52, 96, 172
Alw26I GTCTC 3 cut(s) 22, 104, 551
AlwI GGATC 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 43
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 482
AsuC2I CCSGG 2 cut(s) 157, 158
AsuHPI GGTGA 2 cut(s) 407, 574
AsuII TTCGAA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 1 cut(s) 482
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BccI CCATC 4 cut(s) 125, 338, 411, 532
BcnI CCSGG 2 cut(s) 157, 158
BcoDI GTCTC 3 cut(s) 22, 104, 551
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 2 cut(s) 93, 410
BfoI RGCGCY 1 cut(s) 45
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 157, 158
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 483
BmrFI CCNGG 2 cut(s) 157, 158
BmtI GCTAGC 1 cut(s) 96
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 2 cut(s) 157, 158
BsaJI CCNNGG 2 cut(s) 156, 255
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 593
BseDI CCNNGG 2 cut(s) 156, 255
BseGI GGATG 2 cut(s) 113, 350
BseLI CCNNNNNNNGG 2 cut(s) 220, 593
BseMII CTCAG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 157
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 220, 593
BsmAI GTCTC 3 cut(s) 22, 104, 551
BsmFI GGGAC 1 cut(s) 495
BsoBI CYCGRG 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 486
BspACI CCGC 2 cut(s) 300, 380
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 483
BspOI GCTAGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 481
BspT104I TTCGAA 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 156, 255
BssMI GATC 1 cut(s) 486
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 395
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 46, 50, 94
BstDEI CTNAG 2 cut(s) 201, 246
BstF5I GGATG 2 cut(s) 113, 350
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 489
BstMAI GTCTC 3 cut(s) 22, 104, 551
BstMBI GATC 1 cut(s) 486
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 155, 156
BtsCI GGATG 2 cut(s) 113, 350
Cac8I GCNNGC 3 cut(s) 46, 50, 94
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 482
Cfr9I CCCGGG 1 cut(s) 156
Csp6I GTAC 3 cut(s) 108, 261, 400
CviAII CATG 4 cut(s) 220, 466, 478, 520
CviJI RGCY 8 cut(s) 52, 96, 155, 172, 254, 383, 554, 573
CviKI_1 RGCY 8 cut(s) 52, 96, 155, 172, 254, 383, 554, 573
CviQI GTAC 3 cut(s) 108, 261, 400
DdeI CTNAG 2 cut(s) 201, 246
DpnI GATC 1 cut(s) 488
DpnII GATC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 482
Eco47III AGCGCT 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 4 cut(s) 223, 469, 481, 523
FaqI GGGAC 1 cut(s) 495
FatI CATG 4 cut(s) 219, 465, 477, 519
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 100, 337
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 2 cut(s) 93, 410
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 45
HapII CCGG 1 cut(s) 157
HhaI GCGC 1 cut(s) 44
Hin1II CATG 4 cut(s) 223, 469, 481, 523
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 50
HpaII CCGG 1 cut(s) 157
HphI GGTGA 2 cut(s) 407, 574
Hpy166II GTNNAC 2 cut(s) 76, 582
Hpy8I GTNNAC 2 cut(s) 76, 582
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 4 cut(s) 48, 126, 341, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 2 cut(s) 201, 246
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 4 cut(s) 223, 469, 481, 523
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 431
LpnPI CCDG 2 cut(s) 170, 361
MaeI CTAG 2 cut(s) 93, 410
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 6
MalI GATC 1 cut(s) 488
MboI GATC 1 cut(s) 486
MluCI AATT 4 cut(s) 215, 232, 282, 558
MnlI CCTC 2 cut(s) 296, 365
MseI TTAA 6 cut(s) 162, 186, 210, 426, 503, 525
MslI CAYNNNNRTG 2 cut(s) 367, 512
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 2 cut(s) 157, 158
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 2 cut(s) 157, 158
NdeII GATC 1 cut(s) 486
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 4 cut(s) 223, 469, 481, 523
NlaIV GGNNCC 1 cut(s) 483
NspV TTCGAA 1 cut(s) 16
PflMI CCANNNNNTGG 1 cut(s) 220
PkrI GCNGC 1 cut(s) 382
Psp1406I AACGTT 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 483
PspPI GGNCC 1 cut(s) 482
RsaI GTAC 3 cut(s) 109, 262, 401
RsaNI GTAC 3 cut(s) 108, 261, 400
RseI CAYNNNNRTG 2 cut(s) 367, 512
SaqAI TTAA 6 cut(s) 162, 186, 210, 426, 503, 525
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 486
Sau96I GGNCC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 157, 158
SetI ASST 7 cut(s) 54, 98, 109, 174, 181, 196, 425
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 1 cut(s) 482
SmaI CCCGGG 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 367, 512
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 4 cut(s) 215, 232, 282, 558
SsiI CCGC 2 cut(s) 300, 380
SspMI CTAG 2 cut(s) 93, 410
StyD4I CCNGG 2 cut(s) 155, 156
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 425
TaqI TCGA 2 cut(s) 16, 120
TaqII GACCGA 1 cut(s) 499
TasI AATT 4 cut(s) 215, 232, 282, 558
TauI GCSGC 1 cut(s) 383
Tru1I TTAA 6 cut(s) 162, 186, 210, 426, 503, 525
Tru9I TTAA 6 cut(s) 162, 186, 210, 426, 503, 525
TspDTI ATGAA 4 cut(s) 147, 208, 466, 508
TspMI CCCGGG 1 cut(s) 156
Van91I CCANNNNNTGG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 482
XmaI CCCGGG 1 cut(s) 156
XspI CTAG 2 cut(s) 93, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.