Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Reverse (-)

10481417 .. 10481872

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1096400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCAATTAGACATGGTACAGTACTCAGTAGTTGTGATATCAATTCACTGGTGGAAATAACCTCAAGAAAGACCATCAAACCATCATCTCCAACTCCTCCTCACAATAGAATTCTTAACCTCTCTCTTGTGGACCAACTTATGCCTTCTACTTTATATGGAACCATCCTATGGTTCTTCCCAAACCACAATGCTTCTGATTTTGCTTCCAAAACTTCAGAGAGTACTACAAGAAAATCTAAACGCTTGCAAGATTCTCTATCCAAAACTTTAGTTCATTTCTATCCAATGGCTGGCCAACTCAAAAGCCCGACGTTAGTTGAGTGCAATGATGAAGGGGCTCATTTTCTGGAAGCCCGAGTTAACTGCCAGCTTTTCAGACCTTCTCAGACAACCCAATCCCGAGTTACTCCACCACTTAATGGCCCAAAAATGATCCTGAAACTGCCAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

152

Amino Acids

16.82

Weight (kDa)

9.67

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	18 - 125	1.3e-22	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	171, 293, 422
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	19, 24, 226
AfiI	CCNNNNNNNGG	3 cut(s)	171, 293, 422
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	2 cut(s)	357, 402
AoxI	GGCC	2 cut(s)	295, 424
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	133, 425
AvaI	CYCGRG	2 cut(s)	357, 402
AvaII	GGWCC	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	343
BccI	CCATC	3 cut(s)	83, 91, 173
BcgI	CGANNNNNNTGC	2 cut(s)	348, 382
BmcAI	AGTACT	2 cut(s)	24, 226
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	2 cut(s)	357, 402
BmgT120I	GGNCC	2 cut(s)	133, 425
BmiI	GGNNCC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 293, 422
Bse1I	ACTGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	334
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	171, 293, 422
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	40, 401
BseNI	ACTGG	1 cut(s)	54
BseRI	GAGGAG	2 cut(s)	87, 90
BshFI	GGCC	2 cut(s)	297, 426
BsiHKCI	CYCGRG	2 cut(s)	357, 402
BslI	CCNNNNNNNGG	3 cut(s)	171, 293, 422
BsnI	GGCC	2 cut(s)	297, 426
BsoBI	CYCGRG	2 cut(s)	357, 402
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	435
BspANI	GGCC	2 cut(s)	297, 426
BspCNI	CTCAG	2 cut(s)	39, 400
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	248, 295, 371
BstDEI	CTNAG	2 cut(s)	26, 387
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	297, 426
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	248, 295, 371
Cfr13I	GGNCC	2 cut(s)	133, 425
Csp6I	GTAC	3 cut(s)	18, 23, 225
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	7 cut(s)	293, 297, 309, 341, 356, 373, 426
CviKI_1	RGCY	7 cut(s)	293, 297, 309, 341, 356, 373, 426
CviQI	GTAC	3 cut(s)	18, 23, 225
DdeI	CTNAG	2 cut(s)	26, 387
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	2 cut(s)	357, 402
EcoRI	GAATTC	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	343
FaeI	CATG	1 cut(s)	17
FaiI	YATR	5 cut(s)	15, 143, 157, 159, 172
FatI	CATG	1 cut(s)	13
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	343
HaeIII	GGCC	2 cut(s)	297, 426
Hin1II	CATG	1 cut(s)	17
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	254
HpaI	GTTAAC	1 cut(s)	364
Hpy166II	GTNNAC	2 cut(s)	133, 364
Hpy188I	TCNGA	4 cut(s)	199, 220, 380, 390
Hpy188III	TCNNGA	4 cut(s)	66, 350, 402, 439
Hpy8I	GTNNAC	2 cut(s)	133, 364
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	156, 329, 393
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	314, 452
HpyCH4V	TGCA	2 cut(s)	250, 327
HpyF3I	CTNAG	2 cut(s)	26, 387
HpySE526I	ACGT	2 cut(s)	314, 452
Hsp92II	CATG	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	435
LpnPI	CCDG	5 cut(s)	35, 279, 335, 383, 452
MaeII	ACGT	2 cut(s)	314, 452
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	1 cut(s)	169
MhlI	GDGCHC	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	3 cut(s)	6, 43, 111
MluNI	TGGCCA	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	73, 108, 111, 131
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	3 cut(s)	117, 363, 420
Msp20I	TGGCCA	1 cut(s)	297
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	254
PflMI	CCANNNNNTGG	3 cut(s)	171, 293, 422
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	133, 425
RsaI	GTAC	3 cut(s)	19, 24, 226
RsaNI	GTAC	3 cut(s)	18, 23, 225
SaqAI	TTAA	3 cut(s)	117, 363, 420
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	133, 425
ScaI	AGTACT	2 cut(s)	24, 226
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	6 cut(s)	65, 123, 317, 375, 385, 455
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	3 cut(s)	6, 43, 111
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	317, 455
TasI	AATT	3 cut(s)	6, 43, 111
TatI	WGTACW	2 cut(s)	22, 224
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	3 cut(s)	117, 363, 420
Tru9I	TTAA	3 cut(s)	117, 363, 420
TscAI	CASTG	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	266, 348
TspRI	CASTG	1 cut(s)	54
Van91I	CCANNNNNTGG	3 cut(s)	171, 293, 422
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	111
ZrmI	AGTACT	2 cut(s)	24, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.