Rmu_sc0004155.1_g000011

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004155.1
OG0000722
Physical Location & Seq
Reverse (-)
48863 .. 50224
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004155.1_g000011.1.cds

Sequence Viewer

Length: 1362 bp
atgcattcactggtagaaatcacctcaagaaaatccatcaaaccatcatctccaactcctcatcaaaatagatatctcaaactctctcttttggaccaacttcttcctcctactgtatatggaaccatcatgtatttctacacccctaccaccaaccactgtgatcatgatgttgcactttcgaaagtttctgagactagtacttcgaagcgcttacaagcttctctatccgaaaccttggttcactactatccactcgctggccgtctcaaaggcactgcgtccattgagtgcaacgatgaaggcgcacattttgttgaagcccgagttaggtgtcagctttcagattttcttaaacaacctgatcctgagttacttaaaaaatttatggcagaacatgattctaaaactgctcagatagccttgggtacttgtgtcttgcttgttcaaatcagtgttttcaactgcggaggaatagttgttgctgtatccccttcacacaagattgcagatggaatatccctccacacatttgtacgattatgggctgctataaatcgcggtgagtaccatcaactagttctaccgaagtttaatggagcgactttgttgccgactaaagacttgtccaccaccatgcacaacttcttaggaccaatcccaatcccaactcaaactttaaccacaagaaggttcgtgtttgatctgtcaaagttggcaattctcaaggctgaaattgggagtagaatccaaaagttcaccccgacgaacggacaacttgttctggcaatcatcttaaaatgtgctcttgctgcttctcatcaatccaagcctgatggagatactacttcaaggccaacagtattgtcccaaatggtaaacttgcgcagaagaattgtaccagaagtacccgaaaacgaaatggggaactggttttgggcgctttccctgttattcaaagaaaatgagacagaaatacacgagttggtgatcaatatgaataaaggattgacaaacttctgcaaggagaaagcaaacagatttaaaggtgacgacggattcttggtggtgtctgagtgtatgagagaaaaggctgatctttataatgcagaaaagggcatcaacatctacaagagtacaagtgtgtgcaagttccctctgtatgaaatcgatttcgggtggggaaaacctacctgggtttctagcccaagtgaacacaaaaacttgattttgctgctggacacaaaaagtggtgatggtatagaagcttgggtgacacttgatcaacaagaaatggccatttttgagtgtcacgaggagctccttgcattcagctccgttaatcccagcgtcgttaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

453

Amino Acids

50.63

Weight (kDa)

7.23

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
Acc16I TGCGCA 1 cut(s) 887
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 1 cut(s) 561
AciI CCGC 2 cut(s) 468, 561
AclWI GGATC 1 cut(s) 359
AcoI YGGCCR 2 cut(s) 262, 1296
AcsI RAATTY 1 cut(s) 383
AfaI GTAC 7 cut(s) 202, 430, 537, 569, 900, 909, 1138
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 4 cut(s) 260, 330, 690, 770
AgsI TTSAA 5 cut(s) 320, 449, 463, 852, 958
AhlI ACTAGT 2 cut(s) 197, 577
AjnI CCWGG 1 cut(s) 1193
AloI GAACNNNNNNTCC 2 cut(s) 765, 797
AluBI AGCT 5 cut(s) 221, 340, 1268, 1321, 1335
AluI AGCT 5 cut(s) 221, 340, 1268, 1321, 1335
Alw21I GWGCWC 2 cut(s) 808, 1323
Alw26I GTCTC 3 cut(s) 188, 272, 962
AlwI GGATC 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 324
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 3 cut(s) 262, 854, 1296
ApeKI GCWGC 3 cut(s) 548, 812, 1234
ApoI RAATTY 1 cut(s) 383
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AspLEI GCGC 4 cut(s) 213, 308, 888, 943
AspS9I GGNCC 2 cut(s) 94, 653
AsuHPI GGTGA 7 cut(s) 13, 575, 751, 1000, 1061, 1265, 1285
AsuII TTCGAA 2 cut(s) 182, 206
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 2 cut(s) 94, 653
BaeI ACNNNNGTAYC 2 cut(s) 420, 453
BalI TGGCCA 1 cut(s) 1298
BanII GRGCYC 1 cut(s) 1323
BauI CACGAG 2 cut(s) 980, 1313
Bbv12I GWGCWC 2 cut(s) 808, 1323
BbvI GCAGC 3 cut(s) 535, 799, 1221
BccI CCATC 7 cut(s) 44, 52, 134, 506, 579, 830, 1250
BceAI ACGGC 1 cut(s) 249
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BciT130I CCWGG 1 cut(s) 1195
BciVI GTATCC 1 cut(s) 499
BclI TGATCA 3 cut(s) 163, 990, 1282
BcoDI GTCTC 3 cut(s) 188, 272, 962
BcuI ACTAGT 2 cut(s) 197, 577
BfaI CTAG 3 cut(s) 198, 578, 1203
BfoI RGCGCY 2 cut(s) 214, 944
BfuI GTATCC 1 cut(s) 499
BisI GCNGC 3 cut(s) 549, 813, 1235
BlsI GCNGC 3 cut(s) 550, 814, 1236
BmcAI AGTACT 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 1195
Bme18I GGWCC 2 cut(s) 94, 653
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 2 cut(s) 94, 653
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 1195
BmsI GCATC 1 cut(s) 1128
Bpu14I TTCGAA 2 cut(s) 182, 206
BpuEI CTTGAG 2 cut(s) 10, 710
Bsa29I ATCGAT 1 cut(s) 1170
BsaJI CCNNGG 3 cut(s) 237, 423, 1194
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 330, 690, 770
Bse1I ACTGG 2 cut(s) 15, 935
BseBI CCWGG 1 cut(s) 1195
BseCI ATCGAT 1 cut(s) 1170
BseDI CCNNGG 3 cut(s) 237, 423, 1194
BseLI CCNNNNNNNGG 4 cut(s) 260, 330, 690, 770
BseMII CTCAG 4 cut(s) 183, 360, 428, 1065
BseNI ACTGG 2 cut(s) 15, 935
BseRI GAGGAG 2 cut(s) 48, 1331
BseXI GCAGC 3 cut(s) 535, 799, 1221
BseYI CCCAGC 1 cut(s) 1346
Bsh1236I CGCG 1 cut(s) 561
BshFI GGCC 3 cut(s) 264, 856, 1298
BshVI ATCGAT 1 cut(s) 1170
BsiHKAI GWGCWC 2 cut(s) 808, 1323
BsiHKCI CYCGRG 1 cut(s) 324
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 4 cut(s) 260, 330, 690, 770
BsmAI GTCTC 3 cut(s) 188, 272, 962
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 2 cut(s) 4, 1328
BsnI GGCC 3 cut(s) 264, 856, 1298
BsoBI CYCGRG 1 cut(s) 324
Bsp119I TTCGAA 2 cut(s) 182, 206
Bsp1286I GDGCHC 2 cut(s) 808, 1323
Bsp143I GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
BspACI CCGC 2 cut(s) 468, 561
BspANI GGCC 3 cut(s) 264, 856, 1298
BspCNI CTCAG 4 cut(s) 184, 361, 427, 1066
BspDI ATCGAT 1 cut(s) 1170
BspFNI CGCG 1 cut(s) 561
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 359
BspT104I TTCGAA 2 cut(s) 182, 206
BsrI ACTGG 2 cut(s) 15, 935
BssECI CCNNGG 3 cut(s) 237, 423, 1194
BssMI GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
BssSI CACGAG 2 cut(s) 980, 1313
BssT1I CCWWGG 2 cut(s) 237, 423
Bst2BI CACGAG 2 cut(s) 980, 1313
Bst2UI CCWGG 1 cut(s) 1195
Bst4CI ACNGT 3 cut(s) 115, 161, 862
BstBI TTCGAA 2 cut(s) 182, 206
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 5 cut(s) 192, 369, 414, 649, 1074
BstFNI CGCG 1 cut(s) 561
BstH2I RGCGCY 2 cut(s) 214, 944
BstHHI GCGC 4 cut(s) 213, 308, 888, 943
BstKTI GATC 6 cut(s) 166, 367, 706, 993, 1099, 1285
BstMAI GTCTC 3 cut(s) 188, 272, 962
BstMBI GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
BstMWI GCNNNNNNNGC 2 cut(s) 419, 812
BstNI CCWGG 1 cut(s) 1195
BstSCI CCNGG 1 cut(s) 1193
BstUI CGCG 1 cut(s) 561
BstV1I GCAGC 3 cut(s) 535, 799, 1221
Bsu15I ATCGAT 1 cut(s) 1170
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 3 cut(s) 264, 856, 1298
BsuTUI ATCGAT 1 cut(s) 1170
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 4 cut(s) 8, 157, 276, 460
Cac8I GCNNGC 1 cut(s) 262
CciI TCATGA 1 cut(s) 166
CfoI GCGC 4 cut(s) 213, 308, 888, 943
Cfr13I GGNCC 2 cut(s) 94, 653
ClaI ATCGAT 1 cut(s) 1170
CseI GACGC 2 cut(s) 270, 1339
Csp6I GTAC 7 cut(s) 201, 429, 536, 568, 899, 908, 1137
CviAII CATG 4 cut(s) 130, 167, 398, 637
CviQI GTAC 7 cut(s) 201, 429, 536, 568, 899, 908, 1137
DdeI CTNAG 5 cut(s) 192, 369, 414, 649, 1074
DpnI GATC 6 cut(s) 165, 366, 705, 992, 1098, 1284
DpnII GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
DraI TTTAAA 1 cut(s) 1045
EaeI YGGCCR 2 cut(s) 262, 1296
Ecl136II GAGCTC 1 cut(s) 1321
Eco130I CCWWGG 2 cut(s) 237, 423
Eco24I GRGCYC 1 cut(s) 1323
Eco32I GATATC 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 94, 653
Eco47III AGCGCT 1 cut(s) 212
Eco53kI GAGCTC 1 cut(s) 1321
Eco88I CYCGRG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 1321
EcoRII CCWGG 1 cut(s) 1193
EcoRV GATATC 1 cut(s) 74
EcoT14I CCWWGG 2 cut(s) 237, 423
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 1323
ErhI CCWWGG 2 cut(s) 237, 423
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 4 cut(s) 133, 170, 401, 640
FaqI GGGAC 1 cut(s) 853
FatI CATG 4 cut(s) 129, 166, 397, 636
FbaI TGATCA 3 cut(s) 163, 990, 1282
Fnu4HI GCNGC 3 cut(s) 549, 813, 1235
FriOI GRGCYC 1 cut(s) 1323
Fsp4HI GCNGC 3 cut(s) 549, 813, 1235
FspBI CTAG 3 cut(s) 198, 578, 1203
FspI TGCGCA 1 cut(s) 887
GlaI GCGC 4 cut(s) 212, 307, 887, 942
GluI GCNGC 3 cut(s) 549, 813, 1235
GsaI CCCAGC 1 cut(s) 1350
HaeII RGCGCY 2 cut(s) 214, 944
HaeIII GGCC 3 cut(s) 264, 856, 1298
HgaI GACGC 2 cut(s) 270, 1339
HhaI GCGC 4 cut(s) 213, 308, 888, 943
Hin1II CATG 4 cut(s) 133, 170, 401, 640
Hin6I GCGC 4 cut(s) 211, 306, 886, 941
HinP1I GCGC 4 cut(s) 211, 306, 886, 941
HindIII AAGCTT 2 cut(s) 219, 1266
HinfI GANTC 3 cut(s) 401, 747, 1059
HphI GGTGA 7 cut(s) 13, 575, 751, 1000, 1061, 1265, 1285
Hpy166II GTNNAC 5 cut(s) 244, 630, 759, 880, 1214
Hpy188I TCNGA 5 cut(s) 193, 232, 346, 417, 1075
Hpy188III TCNNGA 4 cut(s) 27, 167, 368, 1313
Hpy8I GTNNAC 5 cut(s) 244, 630, 759, 880, 1214
Hpy99I CGWCG 3 cut(s) 769, 1058, 1355
HpyAV CCTTC 3 cut(s) 296, 504, 684
HpyCH4III ACNGT 3 cut(s) 115, 161, 862
HpyCH4V TGCA 9 cut(s) 4, 176, 294, 509, 640, 1023, 1109, 1149, 1328
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 812
HpyF3I CTNAG 5 cut(s) 192, 369, 414, 649, 1074
Hsp92II CATG 4 cut(s) 133, 170, 401, 640
HspAI GCGC 4 cut(s) 211, 306, 886, 941
Ksp22I TGATCA 3 cut(s) 163, 990, 1282
Kzo9I GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
LmnI GCTCC 4 cut(s) 599, 1318, 1326, 1340
Lsp1109I GCAGC 3 cut(s) 535, 799, 1221
LweI GCATC 1 cut(s) 1128
MaeI CTAG 3 cut(s) 198, 578, 1203
MaeIII GTNAC 4 cut(s) 372, 1049, 1273, 1310
MalI GATC 6 cut(s) 165, 366, 705, 992, 1098, 1284
MboI GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
MboII GAAGA 2 cut(s) 95, 903
MhlI GDGCHC 2 cut(s) 808, 1323
MlsI TGGCCA 1 cut(s) 1298
MluCI AATT 5 cut(s) 383, 720, 735, 894, 1357
MluNI TGGCCA 1 cut(s) 1298
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 7 cut(s) 34, 69, 117, 464, 533, 1167, 1309
Mox20I TGGCCA 1 cut(s) 1298
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 8 cut(s) 354, 378, 594, 680, 797, 1044, 1341, 1356
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 1298
MspR9I CCNGG 1 cut(s) 1195
Mva1269I GAATGC 2 cut(s) 4, 1328
MvaI CCWGG 1 cut(s) 1195
MvnI CGCG 1 cut(s) 561
MwoI GCNNNNNNNGC 2 cut(s) 419, 812
NdeII GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
NlaIII CATG 4 cut(s) 133, 170, 401, 640
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 3 cut(s) 1049, 1273, 1310
NsbI TGCGCA 1 cut(s) 887
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 2 cut(s) 182, 206
PagI TCATGA 1 cut(s) 166
PctI GAATGC 2 cut(s) 4, 1328
PfeI GAWTC 3 cut(s) 401, 747, 1059
PflMI CCANNNNNTGG 1 cut(s) 260
PkrI GCNGC 3 cut(s) 550, 814, 1236
PsiI TTATAA 1 cut(s) 1104
Psp124BI GAGCTC 1 cut(s) 1323
Psp6I CCWGG 1 cut(s) 1193
PspFI CCCAGC 1 cut(s) 1346
PspGI CCWGG 1 cut(s) 1193
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 94, 653
RsaI GTAC 7 cut(s) 202, 430, 537, 569, 900, 909, 1138
RsaNI GTAC 7 cut(s) 201, 429, 536, 568, 899, 908, 1137
RseI CAYNNNNRTG 1 cut(s) 635
SacI GAGCTC 1 cut(s) 1323
SaqAI TTAA 8 cut(s) 354, 378, 594, 680, 797, 1044, 1341, 1356
SatI GCNGC 3 cut(s) 549, 813, 1235
Sau3AI GATC 6 cut(s) 163, 364, 703, 990, 1096, 1282
Sau96I GGNCC 2 cut(s) 94, 653
ScaI AGTACT 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 1195
SduI GDGCHC 2 cut(s) 808, 1323
SfaNI GCATC 1 cut(s) 1128
SfuI TTCGAA 2 cut(s) 182, 206
SinI GGWCC 2 cut(s) 94, 653
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 25, 725
SmoI CTYRAG 2 cut(s) 25, 725
SpeI ACTAGT 2 cut(s) 197, 577
Sse9I AATT 5 cut(s) 383, 720, 735, 894, 1357
SsiI CCGC 2 cut(s) 468, 561
SspMI CTAG 3 cut(s) 198, 578, 1203
SstI GAGCTC 1 cut(s) 1323
StyD4I CCNGG 1 cut(s) 1193
StyI CCWWGG 2 cut(s) 237, 423
TaaI ACNGT 3 cut(s) 115, 161, 862
TaqI TCGA 3 cut(s) 182, 206, 1170
TasI AATT 5 cut(s) 383, 720, 735, 894, 1357
TatI WGTACW 2 cut(s) 200, 1136
TfiI GAWTC 3 cut(s) 401, 747, 1059
Tru1I TTAA 8 cut(s) 354, 378, 594, 680, 797, 1044, 1341, 1356
Tru9I TTAA 8 cut(s) 354, 378, 594, 680, 797, 1044, 1341, 1356
TscAI CASTG 4 cut(s) 15, 164, 283, 460
TseFI GTSAC 3 cut(s) 1049, 1273, 1310
TseI GCWGC 3 cut(s) 548, 812, 1234
Tsp45I GTSAC 3 cut(s) 1049, 1273, 1310
TspDTI ATGAA 3 cut(s) 315, 1013, 1179
TspGWI ACGGA 3 cut(s) 786, 1071, 1327
TspRI CASTG 4 cut(s) 15, 164, 283, 460
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 94, 653
XapI RAATTY 1 cut(s) 383
XspI CTAG 3 cut(s) 198, 578, 1203
ZrmI AGTACT 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.