Rroxscaffold_6G00394430

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
14949536 .. 14955536
6001 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00394430.1

Sequence Viewer

Length: 273 bp
ATGGGTAATTGGTTTTGGTCGGTTCAAGTGGTATTCAAACAAAATGAGACAGAACTACAAGAGTTGATTGCTAAAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTCCGAGTCACTTAGAGAGAGGGGTGAGTTCTTTAAGAGCACGAGGGGTGCATCAATCTTTATAGGGAAAGGATCCGAGAGAGAAGGATTGAAGATCGGTGAAGGGAAAGGCCGAATAGATTGA

Protein Analysis

90

Amino Acids

10.35

Weight (kDa)

9.34

Isoelectric Point (pI)

13.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AclWI GGATC 2 cut(s) 216, 229
AgsI TTSAA 4 cut(s) 26, 37, 124, 241
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 216, 229
AoxI GGCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 185, 260
BamHI GGATCC 1 cut(s) 221
BauI CACGAG 1 cut(s) 190
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 41
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 143
BshFI GGCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 221, 243
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 223
BspPI GGATC 2 cut(s) 216, 229
BssMI GATC 2 cut(s) 221, 243
BssSI CACGAG 1 cut(s) 190
Bst2BI CACGAG 1 cut(s) 190
BstDEI CTNAG 1 cut(s) 161
BstKTI GATC 2 cut(s) 224, 246
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 221, 243
BstSCI CCNGG 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 1 cut(s) 261
CviJI RGCY 1 cut(s) 261
CviKI_1 RGCY 1 cut(s) 261
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 223, 245
DpnII GATC 2 cut(s) 221, 243
EciI GGCGGA 1 cut(s) 128
FaiI YATR 1 cut(s) 212
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 142
HinfI GANTC 3 cut(s) 120, 138, 155
HpaII CCGG 1 cut(s) 142
HphI GGTGA 2 cut(s) 185, 260
Hpy188I TCNGA 2 cut(s) 154, 226
HpyAV CCTTC 3 cut(s) 103, 227, 245
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 161
Kzo9I GATC 2 cut(s) 221, 243
LpnPI CCDG 1 cut(s) 155
LweI GCATC 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 88, 156
MalI GATC 2 cut(s) 223, 245
MboI GATC 2 cut(s) 221, 243
MboII GAAGA 2 cut(s) 143, 253
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 7
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 3 cut(s) 72, 162, 186
MseI TTAA 1 cut(s) 183
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 143
NciI CCSGG 1 cut(s) 143
NdeII GATC 2 cut(s) 221, 243
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 120, 138
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 2 cut(s) 221, 243
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 1 cut(s) 191
SfaNI GCATC 1 cut(s) 209
SgeI CNNG 9 cut(s) 38, 71, 115, 154, 155, 166, 202, 204, 238
Sse9I AATT 1 cut(s) 7
SsiI CCGC 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 141
TasI AATT 1 cut(s) 7
TfiI GAWTC 2 cut(s) 120, 138
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseFI GTSAC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.