RLG00000022966

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000722
Physical Location & Seq
Forward (+)
15956300 .. 15957631
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022966

Sequence Viewer

Length: 1332 bp
ATGGGTTCACCAGCAACATGCACCCATTCACTGGTAAATATCACCTCAAGAAAGATGATTAGACCCTCGTCTCCAACTCCTCATCACCAAAGAACTCTCAACCTCTCTCTTTTGGATCAACTCTTCCCTCCTACCTTATACCCTACTACCATATATTTCTACTCCAGTGATCATTTTCCTTCACATAATGTTTCGGACAGCTTACAAACATCGCTATCCAAGGCTTTGGTTTACTTTTATCCTCTCGCTGGCCGACTAAATGGCCCTGCTTCCATAGACTGCAGTGATGAAGGGGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTCTCGGACTTGCTTAAACTTCCTGAACACGGCTTACTCAACAACCTCATCCCGGAGTTTGATCCTCAAACTGCCCATTCCGCCTTAGGTTCTGCAGTTTTGCTTGTCCAAACGAGTCGTTTTAACTGCGGAGGAATGGCTCTTGCTGTGTCGCTATCGCACAAGATCGCAGATGCAACCTCATGTCAAATATTTGTACGAGCATGGGCAGGCATACATCGTGATCATGAATCTGATAGTCAACTAATGGTACCACAGTTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTCCTTCGTAAACAATTTAGGGCTACCAAAGTACCAAAGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATTGCCACTCTCAAGGCTAAAAGTGGAGGTACAAACGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCTAAACCGGAGACGAGTTCAAGTACAGCAGTGTTGTCGCAAATGGTAAATGTCCGTAGAACTATGGGTTCGTTGGTAGAAAATGCCATGGGAAATTGGTTTTGGCCGCTTCAAGTGATATTCAAACCAAACGAGACGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGAAATAGCAAACTTCTACAAAGAGAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGACGCATCAATGTTTATAGGGCCACTAGTTTGTGCAAGCTCCCTGTATATGAAATTGATTTTGGGTGGGGAAAACCAACATGGGTTACTAGCCAAAGCAACCACAAGAACATATTTGTGTTGATTGATACAAAATGTGGCGATGGGATCGAAGCATGGGTGACACTCGATGAAGAAGAAATGGCGATATTTGAGAGTGATGAGGAGCTCCTTTCGTTCGCTTCTCTAAATCCCAGTGCTAGTGTCAATCGTCATTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

444

Amino Acids

49.23

Weight (kDa)

7.21

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 425 8.1e-73 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 577
AccB7I CCANNNNNTGG 1 cut(s) 31
AciI CCGC 4 cut(s) 408, 456, 890, 983
AclWI GGATC 3 cut(s) 123, 383, 1220
AcoI YGGCCR 2 cut(s) 250, 887
AcsI RAATTY 1 cut(s) 989
AfaI GTAC 6 cut(s) 525, 579, 650, 724, 732, 808
AfiI CCNNNNNNNGG 5 cut(s) 31, 248, 331, 356, 379
AgsI TTSAA 5 cut(s) 757, 804, 896, 907, 994
AhlI ACTAGT 1 cut(s) 1091
AjuI GAANNNNNNNTTGG 4 cut(s) 868, 900, 1110, 1142
AloI GAACNNNNNNTCC 2 cut(s) 992, 1024
AluBI AGCT 5 cut(s) 201, 328, 1048, 1105, 1273
AluI AGCT 5 cut(s) 201, 328, 1048, 1105, 1273
Alw21I GWGCWC 2 cut(s) 766, 1275
Alw26I GTCTC 3 cut(s) 75, 788, 911
AlwI GGATC 3 cut(s) 123, 383, 1220
AoxI GGCC 5 cut(s) 250, 262, 309, 887, 1086
ApeKI GCWGC 1 cut(s) 770
ApoI RAATTY 1 cut(s) 989
Asp718I GGTACC 1 cut(s) 577
AspS9I GGNCC 3 cut(s) 263, 310, 1086
AsuC2I CCSGG 1 cut(s) 380
AsuHPI GGTGA 4 cut(s) 34, 77, 1027, 1237
AxyI CCTNAGG 1 cut(s) 412
BaeI ACNNNNGTAYC 6 cut(s) 569, 602, 632, 665, 714, 747
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 1275
BauI CACGAG 1 cut(s) 765
Bbv12I GWGCWC 2 cut(s) 766, 1275
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 998, 1202
BceAI ACGGC 1 cut(s) 373
BcgI CGANNNNNNTGC 2 cut(s) 801, 835
BclI TGATCA 2 cut(s) 169, 550
BcnI CCSGG 1 cut(s) 380
BcoDI GTCTC 3 cut(s) 75, 788, 911
BcuI ACTAGT 1 cut(s) 1091
BfaI CTAG 4 cut(s) 666, 1092, 1155, 1305
BfmI CTRYAG 2 cut(s) 280, 420
BisI GCNGC 2 cut(s) 771, 890
BlsI GCNGC 2 cut(s) 772, 891
Bme1390I CCNGG 1 cut(s) 380
BmgT120I GGNCC 3 cut(s) 263, 310, 1086
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 1 cut(s) 380
BmrI ACTGGG 1 cut(s) 1293
BmsI GCATC 3 cut(s) 490, 605, 1080
BmuI ACTGGG 1 cut(s) 1293
BoxI GACNNNNGTC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 148
BpuEI CTTGAG 3 cut(s) 31, 326, 689
BpuMI CCSGG 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 219, 870, 1062
BsaWI WCCGGW 1 cut(s) 790
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 248, 331, 356, 379
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 3 cut(s) 36, 165, 1299
Bse21I CCTNAGG 1 cut(s) 412
BseDI CCNNGG 3 cut(s) 219, 870, 1062
BseGI GGATG 1 cut(s) 375
BseLI CCNNNNNNNGG 5 cut(s) 31, 248, 331, 356, 379
BseMII CTCAG 1 cut(s) 1014
BseNI ACTGG 3 cut(s) 36, 165, 1299
BseRI GAGGAG 3 cut(s) 69, 964, 1283
BseXI GCAGC 1 cut(s) 757
BshFI GGCC 5 cut(s) 252, 264, 311, 889, 1088
BshNI GGYRCC 1 cut(s) 577
BsiHKAI GWGCWC 2 cut(s) 766, 1275
BsiSI CCGG 3 cut(s) 380, 608, 791
BslFI GGGAC 1 cut(s) 1080
BslI CCNNNNNNNGG 5 cut(s) 31, 248, 331, 356, 379
BsmAI GTCTC 3 cut(s) 75, 788, 911
BsmBI CGTCTC 3 cut(s) 75, 788, 911
BsmFI GGGAC 1 cut(s) 1080
BsnI GGCC 5 cut(s) 252, 264, 311, 889, 1088
Bsp1286I GDGCHC 2 cut(s) 766, 1275
Bsp143I GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 4 cut(s) 408, 456, 890, 983
BspANI GGCC 5 cut(s) 252, 264, 311, 889, 1088
BspCNI CTCAG 1 cut(s) 1015
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 1 cut(s) 579
BspMAI CTGCAG 2 cut(s) 284, 424
BspPI GGATC 3 cut(s) 123, 383, 1220
BspT107I GGYRCC 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 3 cut(s) 36, 165, 1299
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 3 cut(s) 219, 870, 1062
BssMI GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 3 cut(s) 219, 870, 1062
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 7 cut(s) 250, 326, 538, 609, 985, 1046, 1103
BstDEI CTNAG 2 cut(s) 412, 1023
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 6 cut(s) 118, 172, 391, 495, 553, 1215
BstMAI GTCTC 3 cut(s) 75, 788, 911
BstMBI GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
BstMWI GCNNNNNNNGC 2 cut(s) 407, 770
BstNSI RCATGY 1 cut(s) 21
BstPAI GACNNNNGTC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 378
BstSFI CTRYAG 2 cut(s) 280, 420
BstV1I GCAGC 1 cut(s) 757
BstXI CCANNNNNNTGG 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 412
BsuRI GGCC 5 cut(s) 252, 264, 311, 889, 1088
BtgI CCRYGG 1 cut(s) 870
BtgZI GCGATG 2 cut(s) 195, 1221
BtsCI GGATG 1 cut(s) 375
BtsI GCAGTG 2 cut(s) 289, 819
BtsIMutI CAGTG 5 cut(s) 29, 172, 289, 819, 1306
Cac8I GCNNGC 7 cut(s) 250, 326, 538, 609, 985, 1046, 1103
CciI TCATGA 1 cut(s) 553
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 3 cut(s) 263, 310, 1086
CseI GACGC 1 cut(s) 1077
Csp6I GTAC 6 cut(s) 524, 578, 649, 723, 731, 807
CviAII CATG 8 cut(s) 18, 510, 531, 554, 871, 929, 1146, 1221
CviQI GTAC 6 cut(s) 524, 578, 649, 723, 731, 807
DdeI CTNAG 2 cut(s) 412, 1023
DpnI GATC 6 cut(s) 117, 171, 390, 494, 552, 1214
DpnII GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
EaeI YGGCCR 2 cut(s) 250, 887
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 397
Ecl136II GAGCTC 1 cut(s) 1273
Eco130I CCWWGG 3 cut(s) 219, 870, 1062
Eco24I GRGCYC 1 cut(s) 1275
Eco53kI GAGCTC 1 cut(s) 1273
Eco81I CCTNAGG 1 cut(s) 412
EcoICRI GAGCTC 1 cut(s) 1273
EcoT14I CCWWGG 3 cut(s) 219, 870, 1062
EcoT38I GRGCYC 1 cut(s) 1275
ErhI CCWWGG 3 cut(s) 219, 870, 1062
Esp3I CGTCTC 3 cut(s) 75, 788, 911
FaeI CATG 8 cut(s) 21, 513, 534, 557, 874, 932, 1149, 1224
FaqI GGGAC 1 cut(s) 1080
FatI CATG 8 cut(s) 17, 509, 530, 553, 870, 928, 1145, 1220
FauI CCCGC 1 cut(s) 976
FbaI TGATCA 2 cut(s) 169, 550
Fnu4HI GCNGC 2 cut(s) 771, 890
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 1275
Fsp4HI GCNGC 2 cut(s) 771, 890
FspBI CTAG 4 cut(s) 666, 1092, 1155, 1305
GluI GCNGC 2 cut(s) 771, 890
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 5 cut(s) 252, 264, 311, 889, 1088
HapII CCGG 3 cut(s) 380, 608, 791
HgaI GACGC 1 cut(s) 1077
Hin1II CATG 8 cut(s) 21, 513, 534, 557, 874, 932, 1149, 1224
HincII GTYRAC 2 cut(s) 319, 569
HindII GTYRAC 2 cut(s) 319, 569
HinfI GANTC 4 cut(s) 442, 557, 617, 1025
HpaII CCGG 3 cut(s) 380, 608, 791
HphI GGTGA 4 cut(s) 34, 77, 1027, 1237
Hpy166II GTNNAC 5 cut(s) 8, 232, 319, 569, 628
Hpy188I TCNGA 4 cut(s) 196, 334, 562, 1024
Hpy188III TCNNGA 7 cut(s) 48, 305, 350, 548, 554, 688, 754
Hpy8I GTNNAC 5 cut(s) 8, 232, 319, 569, 628
HpyAV CCTTC 4 cut(s) 189, 284, 631, 973
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 5 cut(s) 21, 282, 422, 503, 1101
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 770
HpyF3I CTNAG 2 cut(s) 412, 1023
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 8 cut(s) 21, 513, 534, 557, 874, 932, 1149, 1224
KpnI GGTACC 1 cut(s) 581
KroI GCCGGC 1 cut(s) 607
KroNI GCCGGC 1 cut(s) 609
Ksp22I TGATCA 2 cut(s) 169, 550
Kzo9I GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
LmnI GCTCC 4 cut(s) 593, 1110, 1270, 1278
Lsp1109I GCAGC 1 cut(s) 757
LweI GCATC 3 cut(s) 490, 605, 1080
MaeI CTAG 4 cut(s) 666, 1092, 1155, 1305
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 3 cut(s) 685, 1150, 1225
MalI GATC 6 cut(s) 117, 171, 390, 494, 552, 1214
MboI GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
MboII GAAGA 5 cut(s) 115, 703, 1013, 1250, 1253
MhlI GDGCHC 2 cut(s) 766, 1275
MluCI AATT 4 cut(s) 631, 877, 989, 1119
MlyI GAGTC 3 cut(s) 451, 611, 1034
MmeI TCCRAC 1 cut(s) 98
MroNI GCCGGC 1 cut(s) 607
MseI TTAA 4 cut(s) 342, 450, 588, 659
MslI CAYNNNNRTG 1 cut(s) 1181
MspI CCGG 3 cut(s) 380, 608, 791
MspR9I CCNGG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 407, 770
NaeI GCCGGC 1 cut(s) 609
NciI CCSGG 1 cut(s) 380
NcoI CCATGG 1 cut(s) 870
NdeII GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
NgoMIV GCCGGC 1 cut(s) 607
NlaIII CATG 8 cut(s) 21, 513, 534, 557, 874, 932, 1149, 1224
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 2 cut(s) 685, 1225
NspI RCATGY 1 cut(s) 21
PagI TCATGA 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 1321
PdiI GCCGGC 1 cut(s) 609
PfeI GAWTC 1 cut(s) 557
PflMI CCANNNNNTGG 1 cut(s) 31
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 2 cut(s) 772, 891
PleI GAGTC 3 cut(s) 450, 611, 1033
PpsI GAGTC 3 cut(s) 450, 611, 1033
PshAI GACNNNNGTC 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 1275
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 3 cut(s) 263, 310, 1086
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
PstI CTGCAG 2 cut(s) 284, 424
RsaI GTAC 6 cut(s) 525, 579, 650, 724, 732, 808
RsaNI GTAC 6 cut(s) 524, 578, 649, 723, 731, 807
RseI CAYNNNNRTG 1 cut(s) 1181
SacI GAGCTC 1 cut(s) 1275
SaqAI TTAA 4 cut(s) 342, 450, 588, 659
SatI GCNGC 2 cut(s) 771, 890
Sau3AI GATC 6 cut(s) 115, 169, 388, 492, 550, 1212
Sau96I GGNCC 3 cut(s) 263, 310, 1086
SchI GAGTC 3 cut(s) 451, 611, 1034
ScrFI CCNGG 1 cut(s) 380
SduI GDGCHC 2 cut(s) 766, 1275
SfaNI GCATC 3 cut(s) 490, 605, 1080
SfcI CTRYAG 2 cut(s) 280, 420
SmiMI CAYNNNNRTG 1 cut(s) 1181
SmlI CTYRAG 3 cut(s) 46, 305, 704
SmoI CTYRAG 3 cut(s) 46, 305, 704
SpeI ACTAGT 1 cut(s) 1091
Sse9I AATT 4 cut(s) 631, 877, 989, 1119
SsiI CCGC 4 cut(s) 408, 456, 890, 983
SspI AATATT 1 cut(s) 519
SspMI CTAG 4 cut(s) 666, 1092, 1155, 1305
SstI GAGCTC 1 cut(s) 1275
StyD4I CCNGG 1 cut(s) 378
StyI CCWWGG 3 cut(s) 219, 870, 1062
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 1 cut(s) 732
TaqI TCGA 2 cut(s) 1215, 1233
TasI AATT 4 cut(s) 631, 877, 989, 1119
TatI WGTACW 1 cut(s) 806
TauI GCSGC 1 cut(s) 892
TfiI GAWTC 1 cut(s) 557
Tru1I TTAA 4 cut(s) 342, 450, 588, 659
Tru9I TTAA 4 cut(s) 342, 450, 588, 659
TscAI CASTG 5 cut(s) 36, 172, 289, 819, 1306
TseFI GTSAC 2 cut(s) 685, 1225
TseI GCWGC 1 cut(s) 770
Tsp45I GTSAC 2 cut(s) 685, 1225
TspDTI ATGAA 4 cut(s) 303, 570, 1131, 1251
TspGWI ACGGA 3 cut(s) 606, 827, 935
TspRI CASTG 5 cut(s) 36, 172, 289, 819, 1306
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 1 cut(s) 989
XceI RCATGY 1 cut(s) 21
XspI CTAG 4 cut(s) 666, 1092, 1155, 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.