Rmu_sc0004448.1_g000031

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004448.1
OG0000722
Physical Location & Seq
Reverse (-)
119225 .. 119692
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004448.1_g000031.1.cds

Sequence Viewer

Length: 378 bp
atgggtaattggttttggtcggttcaagtggtattcaaacaaaacgagacagaactacaagagttggttgccaaaatgaggaaaggagtaacagacttctacaaggagaaggcggacagattcaaaggcgaagatggattccgggtggtgtccgagtcacttagagagaggggtgagttctttaagagcacaaagggccaaagcaaccacaagaatctatttctcctgattgacacaaaacatggagatggcatcgaagtgtgggtgacactggatgaagaagaaatggctatatttgagagtgaagaggagctcctttcatttgcttgtgcaaaccctagtgcaattgttgatcatcaatctcactatcgtatgtga

Protein Analysis

125

Amino Acids

14.58

Weight (kDa)

5.11

Isoelectric Point (pI)

44.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 78
AgsI TTSAA 3 cut(s) 26, 37, 124
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw21I GWGCWC 2 cut(s) 191, 315
Alw26I GTCTC 1 cut(s) 41
AoxI GGCC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 185, 277
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 191, 315
BccI CCATC 2 cut(s) 128, 242
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 276
BseRI GAGGAG 1 cut(s) 323
BshFI GGCC 1 cut(s) 198
BsiHKAI GWGCWC 2 cut(s) 191, 315
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 191, 315
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 276
BssMI GATC 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 196
CviAII CATG 1 cut(s) 242
CviJI RGCY 3 cut(s) 198, 290, 313
CviKI_1 RGCY 3 cut(s) 198, 290, 313
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
EciI GGCGGA 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 243, 293, 374
FatI CATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 352
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 142
Hin1II CATG 1 cut(s) 245
HinfI GANTC 4 cut(s) 120, 138, 155, 214
HpaII CCGG 1 cut(s) 142
HphI GGTGA 2 cut(s) 185, 277
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 332, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 161
Hsp92II CATG 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 2 cut(s) 310, 318
LpnPI CCDG 3 cut(s) 155, 239, 257
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 3 cut(s) 88, 156, 265
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 4 cut(s) 143, 290, 293, 317
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 2 cut(s) 191, 315
MluCI AATT 2 cut(s) 7, 345
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 3 cut(s) 72, 162, 301
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 2 cut(s) 246, 257
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 195
NciI CCSGG 1 cut(s) 143
NdeII GATC 1 cut(s) 352
NlaIII CATG 1 cut(s) 245
NmuCI GTSAC 2 cut(s) 156, 265
PfeI GAWTC 3 cut(s) 120, 138, 214
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 315
PspPI GGNCC 1 cut(s) 196
RseI CAYNNNNRTG 2 cut(s) 246, 257
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 2 cut(s) 191, 315
SetI ASST 1 cut(s) 315
SfaNI GCATC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 246, 257
Sse9I AATT 2 cut(s) 7, 345
SsiI CCGC 1 cut(s) 113
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 141
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 7, 345
TfiI GAWTC 3 cut(s) 120, 138, 214
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 156, 265
Tsp45I GTSAC 2 cut(s) 156, 265
TspDTI ATGAA 2 cut(s) 291, 309
TspRI CASTG 1 cut(s) 276
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.