Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

21019166 .. 21020592

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAGATCGTCTCAAGAAAACTTGTTAAGCCATCCGCTCCTACTCCTCACCTCAAAACCTTCAAGCTCACTCTGTTAGACCAAAGAATGCCTTCCAATTTGTACGGAAAGATACTTCTATTCTATCCCGGCAACAACAACAATAATAGCGCTACCCTTGTCTCTGAAAGATCAAACAACCTACAGAAGTCACTATCCAAAACCTTGGTTAGTTTCTATCCTCTAGCTGGGCAGCTCAAAGACGATGTCTCCATTGATTGCAATGATGAAGGTGCTTATTTTATAGAAGCGAAAATCAATTGCAGCATCTCTGATGTTCTCTCCCAACCTGATCCCAACTTACTTGAACAGTTTGTCCCCTGCACTAATGATGCTGAAGCCTTGAATGTCATGATTACACTTATCCAACTCACTGTCTTTAAATGTGGTGGGATTGCGGTTGGAACCTGTATATCGCATAAGATTACAGATGCATCATCTATGTTCACTTTTCTTGGGAGTTGGACAGCAGATGCTCGTGGTGAAATTGGAGTTCTTCCCGTGTTCATCGAACCATCTCTGATGCCACCTTCGAGTACACCAATCAGACCAACTCCTGGCTTTCGTGGAGTTCAGAATTTCGTAACGAGGAGGTTTGTTTTCAGCCACTCAAAGATGGCAAGTCTCAAGGCAGAATCTAGTACACTACTTCAAAAGCTTGGCCATAATGCTCCCTCTACAGATGTTGAGCTAGTAACAGCAATTCTGTGGAAATGTGCTATTGCTTCTTCTCAATCTATATTAGGACGACCAAGGCCTTCGTTGATGTCCCAAGTGGTGAATCTACGCAATAGAATGGTCCCTCGGCTGCCCGAGAATACGATGGGGAATCTCATTTTTGATTTCCATGTGTTGATTGAGGAAAGTAACAAGGAATTACCTGAGATGGTTGCCAATATGAGAAAAGGGTTCAAAGACTTCTGCAGTCACAAGGCAAACAGATTCATAGGTGAAGACGCTGTATCAGTTCTTTTTGATTCTCTTGAAGAGGAGGATGAACTAATTACTAAAATGGGAGTGACCATCTTTAGGTTTGCAAGTATATGCGGATTTCCGCTTTATGATATGGATTTTGGTTGGGGGAAACCCATTTGGGCCACTAATCGGCCTGGATCACTCAACAACTTATTTACTTTGATTGATACCAAAGGGGGTGAAGATATTGAAGCATGGGTGAATCTGGAACAACAAGAGATGGCTATATTTGAGCGTAGTGAGTTGCTTCTTTCATTTTCATCCTTGAACCCTAGTGCAATAATTATGGGACGCTGCTGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

440

Amino Acids

48.69

Weight (kDa)

5.8

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	2 - 417	3.7e-78	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccBSI	CCGCTC	1 cut(s)	38
AciI	CCGC	4 cut(s)	36, 437, 1086, 1094
AclWI	GGATC	2 cut(s)	326, 1159
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	3 cut(s)	104, 577, 682
AfeI	AGCGCT	1 cut(s)	151
AfiI	CCNNNNNNNGG	4 cut(s)	227, 596, 1068, 1143
AgsI	TTSAA	8 cut(s)	64, 347, 385, 692, 952, 1025, 1205, 1282
AjnI	CCWGG	2 cut(s)	595, 1147
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
AluBI	AGCT	5 cut(s)	67, 227, 235, 697, 730
AluI	AGCT	5 cut(s)	67, 227, 235, 697, 730
Alw26I	GTCTC	4 cut(s)	16, 166, 253, 668
AlwI	GGATC	2 cut(s)	326, 1159
Ama87I	CYCGRG	1 cut(s)	851
Aor51HI	AGCGCT	1 cut(s)	151
AoxI	GGCC	4 cut(s)	700, 794, 1134, 1145
ApeKI	GCWGC	5 cut(s)	232, 303, 847, 1308, 1311
ApoI	RAATTY	1 cut(s)	616
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
Asp700I	GAANNNNTTC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	838, 1134
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	6 cut(s)	41, 533, 829, 1001, 1205, 1225
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	1 cut(s)	838
BalI	TGGCCA	1 cut(s)	702
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	5 cut(s)	244, 315, 834, 1295, 1298
BccI	CCATC	7 cut(s)	40, 562, 649, 856, 919, 1070, 1228
BciT130I	CCWGG	2 cut(s)	597, 1149
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	4 cut(s)	16, 166, 253, 668
BfaI	CTAG	4 cut(s)	224, 678, 731, 1287
BfmI	CTRYAG	3 cut(s)	182, 717, 961
BfoI	RGCGCY	1 cut(s)	153
BisI	GCNGC	5 cut(s)	233, 304, 848, 1309, 1312
BlsI	GCNGC	5 cut(s)	234, 305, 849, 1310, 1313
Bme1390I	CCNGG	3 cut(s)	129, 597, 1149
Bme18I	GGWCC	1 cut(s)	838
BmeT110I	CYCGRG	1 cut(s)	851
BmgT120I	GGNCC	2 cut(s)	838, 1134
BmiI	GGNNCC	2 cut(s)	445, 840
BmrFI	CCNGG	3 cut(s)	129, 597, 1149
BmsI	GCATC	6 cut(s)	315, 361, 460, 482, 502, 552
BpiI	GAAGAC	1 cut(s)	999
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	204, 791, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 596, 1068, 1143
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	597, 1149
BseDI	CCNNGG	3 cut(s)	204, 791, 842
BseGI	GGATG	3 cut(s)	32, 1039, 1274
BseLI	CCNNNNNNNGG	4 cut(s)	227, 596, 1068, 1143
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	912
BseRI	GAGGAG	3 cut(s)	36, 643, 1043
BseXI	GCAGC	5 cut(s)	244, 315, 834, 1295, 1298
BseYI	CCCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	346
BshFI	GGCC	4 cut(s)	702, 796, 1136, 1147
BsiHKCI	CYCGRG	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	3 cut(s)	341, 793, 824
BslI	CCNNNNNNNGG	4 cut(s)	227, 596, 1068, 1143
BsmAI	GTCTC	4 cut(s)	16, 166, 253, 668
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	3 cut(s)	341, 793, 824
BsmI	GAATGC	1 cut(s)	93
BsnI	GGCC	4 cut(s)	702, 796, 1136, 1147
BsoBI	CYCGRG	1 cut(s)	851
Bsp143I	GATC	4 cut(s)	6, 170, 331, 1151
BspACI	CCGC	4 cut(s)	36, 437, 1086, 1094
BspANI	GGCC	4 cut(s)	702, 796, 1136, 1147
BspCNI	CTCAG	1 cut(s)	913
BspHI	TCATGA	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	445, 840
BspMAI	CTGCAG	1 cut(s)	965
BspPI	GGATC	2 cut(s)	326, 1159
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	204, 791, 842
BssMI	GATC	4 cut(s)	6, 170, 331, 1151
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	204, 791
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	2 cut(s)	597, 1149
Bst4CI	ACNGT	2 cut(s)	351, 415
Bst6I	CTCTTC	1 cut(s)	1020
BstDEI	CTNAG	1 cut(s)	921
BstF5I	GGATG	3 cut(s)	32, 1039, 1274
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	4 cut(s)	9, 173, 334, 1154
BstMAI	GTCTC	4 cut(s)	16, 166, 253, 668
BstMBI	GATC	4 cut(s)	6, 170, 331, 1151
BstNI	CCWGG	2 cut(s)	597, 1149
BstSCI	CCNGG	3 cut(s)	127, 595, 1147
BstSFI	CTRYAG	3 cut(s)	182, 717, 961
BstV1I	GCAGC	5 cut(s)	244, 315, 834, 1295, 1298
BstV2I	GAAGAC	1 cut(s)	999
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	702, 796, 1136, 1147
BtsCI	GGATG	3 cut(s)	32, 1039, 1274
BtsIMutI	CAGTG	1 cut(s)	411
CciI	TCATGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	838, 1134
CseI	GACGC	2 cut(s)	1004, 1314
Csp6I	GTAC	3 cut(s)	103, 576, 681
CviAII	CATG	3 cut(s)	391, 887, 1209
CviQI	GTAC	3 cut(s)	103, 576, 681
DdeI	CTNAG	1 cut(s)	921
DpnI	GATC	4 cut(s)	8, 172, 333, 1153
DpnII	GATC	4 cut(s)	6, 170, 331, 1151
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	1020
EarI	CTCTTC	1 cut(s)	1020
Eco130I	CCWWGG	2 cut(s)	204, 791
Eco147I	AGGCCT	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	838
Eco47III	AGCGCT	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	851
EcoRII	CCWGG	2 cut(s)	595, 1147
EcoT14I	CCWWGG	2 cut(s)	204, 791
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	2 cut(s)	204, 791
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	3 cut(s)	394, 890, 1212
FalI	AAGNNNNNCTT	2 cut(s)	76, 108
FaqI	GGGAC	3 cut(s)	341, 793, 824
FatI	CATG	3 cut(s)	390, 886, 1208
Fnu4HI	GCNGC	5 cut(s)	233, 304, 848, 1309, 1312
FokI	GGATG	3 cut(s)	19, 1046, 1261
Fsp4HI	GCNGC	5 cut(s)	233, 304, 848, 1309, 1312
FspBI	CTAG	4 cut(s)	224, 678, 731, 1287
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	233, 304, 848, 1309, 1312
GsaI	CCCAGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	4 cut(s)	702, 796, 1136, 1147
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	1004, 1314
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	3 cut(s)	394, 890, 1212
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	6 cut(s)	674, 820, 868, 981, 1016, 1216
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	6 cut(s)	41, 533, 829, 1001, 1205, 1225
Hpy166II	GTNNAC	3 cut(s)	486, 578, 683
Hpy188I	TCNGA	5 cut(s)	166, 313, 561, 587, 615
Hpy188III	TCNNGA	4 cut(s)	15, 391, 1022, 1220
Hpy8I	GTNNAC	3 cut(s)	486, 578, 683
HpyAV	CCTTC	5 cut(s)	70, 102, 263, 579, 807
HpyCH4III	ACNGT	2 cut(s)	351, 415
HpyCH4V	TGCA	7 cut(s)	261, 303, 363, 473, 963, 1076, 1292
HpyF3I	CTNAG	1 cut(s)	921
Hsp92II	CATG	3 cut(s)	394, 890, 1212
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	4 cut(s)	6, 170, 331, 1151
LmnI	GCTCC	2 cut(s)	43, 715
Lsp1109I	GCAGC	5 cut(s)	244, 315, 834, 1295, 1298
LweI	GCATC	6 cut(s)	315, 361, 460, 482, 502, 552
MaeI	CTAG	4 cut(s)	224, 678, 731, 1287
MaeIII	GTNAC	6 cut(s)	189, 622, 733, 905, 965, 1057
MalI	GATC	4 cut(s)	8, 172, 333, 1153
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	4 cut(s)	6, 170, 331, 1151
MboII	GAAGA	5 cut(s)	527, 759, 1004, 1037, 1208
MfeI	CAATTG	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	8 cut(s)	97, 298, 525, 616, 741, 914, 1041, 1296
MluNI	TGGCCA	1 cut(s)	702
MmeI	TCCRAC	3 cut(s)	421, 430, 482
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	91
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	2 cut(s)	27, 420
Msp20I	TGGCCA	1 cut(s)	702
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	3 cut(s)	129, 597, 1149
MunI	CAATTG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	93
MvaI	CCWGG	2 cut(s)	597, 1149
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	6, 170, 331, 1151
NlaIII	CATG	3 cut(s)	394, 890, 1212
NlaIV	GGNNCC	2 cut(s)	445, 840
NmeAIII	GCCGAG	1 cut(s)	823
NmuCI	GTSAC	3 cut(s)	189, 965, 1057
NsiI	ATGCAT	1 cut(s)	475
PagI	TCATGA	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	91
PfeI	GAWTC	6 cut(s)	674, 820, 868, 981, 1016, 1216
PflFI	GACNNNGTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	5 cut(s)	234, 305, 849, 1310, 1313
Psp6I	CCWGG	2 cut(s)	595, 1147
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	595, 1147
PspN4I	GGNNCC	2 cut(s)	445, 840
PspPI	GGNCC	2 cut(s)	838, 1134
PstI	CTGCAG	1 cut(s)	965
PsyI	GACNNNGTC	1 cut(s)	245
RsaI	GTAC	3 cut(s)	104, 577, 682
RsaNI	GTAC	3 cut(s)	103, 576, 681
SaqAI	TTAA	2 cut(s)	27, 420
SatI	GCNGC	5 cut(s)	233, 304, 848, 1309, 1312
Sau3AI	GATC	4 cut(s)	6, 170, 331, 1151
Sau96I	GGNCC	2 cut(s)	838, 1134
ScrFI	CCNGG	3 cut(s)	129, 597, 1149
SfaNI	GCATC	6 cut(s)	315, 361, 460, 482, 502, 552
SfcI	CTRYAG	3 cut(s)	182, 717, 961
SinI	GGWCC	1 cut(s)	838
SmlI	CTYRAG	2 cut(s)	13, 665
SmoI	CTYRAG	2 cut(s)	13, 665
Sse9I	AATT	8 cut(s)	97, 298, 525, 616, 741, 914, 1041, 1296
SseBI	AGGCCT	1 cut(s)	796
SsiI	CCGC	4 cut(s)	36, 437, 1086, 1094
SspMI	CTAG	4 cut(s)	224, 678, 731, 1287
StuI	AGGCCT	1 cut(s)	796
StyD4I	CCNGG	3 cut(s)	127, 595, 1147
StyI	CCWWGG	2 cut(s)	204, 791
TaaI	ACNGT	2 cut(s)	351, 415
TaqI	TCGA	2 cut(s)	549, 572
TasI	AATT	8 cut(s)	97, 298, 525, 616, 741, 914, 1041, 1296
TatI	WGTACW	2 cut(s)	575, 680
TfiI	GAWTC	6 cut(s)	674, 820, 868, 981, 1016, 1216
Tru1I	TTAA	2 cut(s)	27, 420
Tru9I	TTAA	2 cut(s)	27, 420
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	3 cut(s)	189, 965, 1057
TseI	GCWGC	5 cut(s)	232, 303, 847, 1308, 1311
Tsp45I	GTSAC	3 cut(s)	189, 965, 1057
TspDTI	ATGAA	6 cut(s)	282, 535, 973, 1050, 1257, 1263
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	1 cut(s)	838
XapI	RAATTY	1 cut(s)	616
XmnI	GAANNNNTTC	1 cut(s)	91
XspI	CTAG	4 cut(s)	224, 678, 731, 1287
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.