Rw3G025280

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
33552356 .. 33553689
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025280.1

Sequence Viewer

Length: 1251 bp
ATGGCTGAAGCATGCACCCATCCACTGGTAAAAATCACCTCGAGGAAGTTGATTAAACCCTCATTTCCAACTCCTCATCACCAAAGAAATCTCCAGCTCTCTTTTCTGGACCAACTGCTCGATCCCGCTTCCACTGTTTCAGAGAGCTTGCAAGCATCTCTCTCCAAATCTTTGGTTCTCTTCTATCCACTCGCTGGCCGACTGAAAACCGCTGCCTCCGTTCACTGCAACGACGAAGGAGCTCATTTTCTTGAGGCCCGAGTTAACTGCCGGCTCTCGGATTTACTTAAAGTTCCTGAGCATAAGTTGCTTAACGACCTTATCCCCGAGTTTGAGCCTAAAACAGTTCAGTTAGCGTTGGGTTCAGTTGTTTTAATTGTTCAAGTGAGTCTTTTCAACTGTGAAGGAATAGCTGTTGCTGCGTCCCCAATACACAAGATCGGAGATGCCGGCGCATATTACAAATTTATACAAACATGGGCAGCCATACATCGTGGTGAATCCGATCAACTAGTGCTACCGGAGTTTAACGGAGCATCTGTGCTGCCTCCCAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAGTTGACAACAAGGAGGTTCGTGTTTGATGTCACAAAGATTGCAAGTCTCAAGGCCAAAATCGGAGGCACACATGTAGAACTTGTTTCGGCAATTATCCTCAGAAGTGCTCTTGCTGCTTCTCATAAATCGAAGCCGGAGACTACTTCAAGCACAAATGTGTTGTCCCAAATTGTAAGTTTCCGCAACAGAATAGTCCCCGCGGTAGCACCAAATGTCATGGGTAATTGGTTTTGGTCGGTTCGAGTGGTATTCAAACAAAACGAGACAGAACTACAAGAGTTGGTTGCTAAAATGAGGAAAGGAGTAACAGACTTCTACAAGGAGAAGGCGGACAGATTCAAAGGCGAAGATGGATTCCGGGTGGTGTCCGACACAAAGGGGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGCTCCCCGTATATGAAATTGATTTTGGTTGGGGGAAACCAACTTGGGTCACTAGCCAAAGCAACCACAAGAATCTATTTCTCCTGATCGATACAAAACATGGAGATGGCATCGAAGTGTGGGTGACACTGGATGAAGAAGAAATGGCTATATTTGAGAGTGAAGAGGAGCTCCTTTCATTTGCTTGTGCAAACCCTAGTGCAATTGTTAATCATCAATCTCACTCTCGTATGTGA

Protein Analysis

416

Amino Acids

46.18

Weight (kDa)

8.1

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 396 5.5e-59 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 40
AccB7I CCANNNNNTGG 2 cut(s) 25, 194
AccII CGCG 1 cut(s) 800
AciI CCGC 6 cut(s) 126, 210, 781, 798, 800, 929
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 1003
AfiI CCNNNNNNNGG 3 cut(s) 25, 194, 277
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 5 cut(s) 383, 397, 747, 853, 940
AhlI ACTAGT 1 cut(s) 511
AjuI GAANNNNNNNTTGG 2 cut(s) 1023, 1055
AleI CACNNNNGTG 1 cut(s) 755
AluBI AGCT 6 cut(s) 97, 147, 242, 413, 1018, 1186
AluI AGCT 6 cut(s) 97, 147, 242, 413, 1018, 1186
Alw21I GWGCWC 3 cut(s) 244, 709, 1188
Alw26I GTCTC 3 cut(s) 650, 731, 857
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 3 cut(s) 40, 258, 326
AoxI GGCC 3 cut(s) 196, 255, 651
ApeKI GCWGC 5 cut(s) 212, 419, 482, 544, 713
ApoI RAATTY 1 cut(s) 464
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
AseI ATTAAT 1 cut(s) 584
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 2 cut(s) 109, 256
AsuC2I CCSGG 1 cut(s) 959
AsuHPI GGTGA 4 cut(s) 28, 71, 509, 1150
AvaI CYCGRG 3 cut(s) 40, 258, 326
AvaII GGWCC 1 cut(s) 109
BanII GRGCYC 2 cut(s) 244, 1188
Bbv12I GWGCWC 3 cut(s) 244, 709, 1188
BbvI GCAGC 5 cut(s) 199, 406, 494, 531, 700
BccI CCATC 3 cut(s) 27, 944, 1115
BcgI CGANNNNNNTGC 2 cut(s) 249, 283
BcnI CCSGG 1 cut(s) 959
BcoDI GTCTC 3 cut(s) 650, 731, 857
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 3 cut(s) 512, 1068, 1212
BisI GCNGC 5 cut(s) 213, 420, 483, 545, 714
BlsI GCNGC 5 cut(s) 214, 421, 484, 546, 715
Bme1390I CCNGG 1 cut(s) 959
Bme18I GGWCC 1 cut(s) 109
BmeT110I CYCGRG 3 cut(s) 40, 258, 326
BmgT120I GGNCC 2 cut(s) 109, 256
BmrFI CCNGG 1 cut(s) 959
BmsI GCATC 5 cut(s) 164, 436, 545, 993, 1134
BpmI CTGGAG 1 cut(s) 77
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 272, 632
BpuMI CCSGG 1 cut(s) 959
Bsa29I ATCGAT 1 cut(s) 1104
BsaJI CCNNGG 1 cut(s) 798
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 194, 277
Bse118I RCCGGY 2 cut(s) 270, 449
Bse1I ACTGG 2 cut(s) 30, 1149
BseCI ATCGAT 1 cut(s) 1104
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 2 cut(s) 19, 1153
BseLI CCNNNNNNNGG 3 cut(s) 25, 194, 277
BseMII CTCAG 2 cut(s) 288, 712
BseNI ACTGG 2 cut(s) 30, 1149
BseRI GAGGAG 2 cut(s) 63, 1196
BseXI GCAGC 5 cut(s) 199, 406, 494, 531, 700
Bsh1236I CGCG 1 cut(s) 800
BshFI GGCC 3 cut(s) 198, 257, 653
BshVI ATCGAT 1 cut(s) 1104
BsiHKAI GWGCWC 3 cut(s) 244, 709, 1188
BsiHKCI CYCGRG 3 cut(s) 40, 258, 326
BsiSI CCGG 5 cut(s) 271, 450, 521, 734, 958
BslFI GGGAC 3 cut(s) 409, 748, 779
BslI CCNNNNNNNGG 3 cut(s) 25, 194, 277
BsmAI GTCTC 3 cut(s) 650, 731, 857
BsmFI GGGAC 3 cut(s) 409, 748, 779
BsnI GGCC 3 cut(s) 198, 257, 653
BsoBI CYCGRG 3 cut(s) 40, 258, 326
Bsp1286I GDGCHC 3 cut(s) 244, 709, 1188
Bsp143I GATC 4 cut(s) 121, 438, 505, 1101
BspACI CCGC 6 cut(s) 126, 210, 781, 798, 800, 929
BspANI GGCC 3 cut(s) 198, 257, 653
BspCNI CTCAG 2 cut(s) 289, 711
BspDI ATCGAT 1 cut(s) 1104
BspFNI CGCG 1 cut(s) 800
BspPI GGATC 1 cut(s) 116
BsrFI RCCGGY 2 cut(s) 270, 449
BsrI ACTGG 2 cut(s) 30, 1149
BssAI RCCGGY 2 cut(s) 270, 449
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 4 cut(s) 121, 438, 505, 1101
Bst4CI ACNGT 3 cut(s) 136, 346, 401
Bst6I CTCTTC 2 cut(s) 185, 1173
BstAPI GCANNNNNTGC 1 cut(s) 307
BstC8I GCNNGC 7 cut(s) 13, 149, 153, 196, 272, 451, 1016
BstDEI CTNAG 2 cut(s) 297, 698
BstDSI CCRYGG 1 cut(s) 798
BstF5I GGATG 2 cut(s) 19, 1153
BstFNI CGCG 1 cut(s) 800
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 4 cut(s) 124, 441, 508, 1104
BstMAI GTCTC 3 cut(s) 650, 731, 857
BstMBI GATC 4 cut(s) 121, 438, 505, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 307, 419, 713
BstNSI RCATGY 2 cut(s) 15, 674
BstSCI CCNGG 1 cut(s) 957
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 5 cut(s) 199, 406, 494, 531, 700
BstXI CCANNNNNNTGG 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 1104
BsuRI GGCC 3 cut(s) 198, 257, 653
BsuTUI ATCGAT 1 cut(s) 1104
BtgI CCRYGG 1 cut(s) 798
BtsCI GGATG 2 cut(s) 19, 1153
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 4 cut(s) 23, 132, 223, 1142
Cac8I GCNNGC 7 cut(s) 13, 149, 153, 196, 272, 451, 1016
CfoI GCGC 1 cut(s) 455
Cfr10I RCCGGY 2 cut(s) 270, 449
Cfr13I GGNCC 2 cut(s) 109, 256
Cfr42I CCGCGG 1 cut(s) 801
ClaI ATCGAT 1 cut(s) 1104
CseI GACGC 1 cut(s) 411
Csp6I GTAC 1 cut(s) 1002
CviAII CATG 5 cut(s) 12, 477, 671, 817, 1115
CviQI GTAC 1 cut(s) 1002
DdeI CTNAG 2 cut(s) 297, 698
DpnI GATC 4 cut(s) 123, 440, 507, 1103
DpnII GATC 4 cut(s) 121, 438, 505, 1101
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 185, 1173
EarI CTCTTC 2 cut(s) 185, 1173
EciI GGCGGA 1 cut(s) 944
Ecl136II GAGCTC 2 cut(s) 242, 1186
Eco24I GRGCYC 2 cut(s) 244, 1188
Eco47I GGWCC 1 cut(s) 109
Eco53kI GAGCTC 2 cut(s) 242, 1186
Eco57I CTGAAG 1 cut(s) 27
Eco88I CYCGRG 3 cut(s) 40, 258, 326
EcoICRI GAGCTC 2 cut(s) 242, 1186
EcoT38I GRGCYC 2 cut(s) 244, 1188
FaeI CATG 5 cut(s) 15, 480, 674, 820, 1118
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 3 cut(s) 409, 748, 779
FatI CATG 5 cut(s) 11, 476, 670, 816, 1114
FauI CCCGC 2 cut(s) 133, 805
Fnu4HI GCNGC 5 cut(s) 213, 420, 483, 545, 714
FokI GGATG 2 cut(s) 6, 1160
FriOI GRGCYC 2 cut(s) 244, 1188
Fsp4HI GCNGC 5 cut(s) 213, 420, 483, 545, 714
FspBI CTAG 3 cut(s) 512, 1068, 1212
GlaI GCGC 1 cut(s) 454
GluI GCNGC 5 cut(s) 213, 420, 483, 545, 714
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 3 cut(s) 198, 257, 653
HapII CCGG 5 cut(s) 271, 450, 521, 734, 958
HgaI GACGC 1 cut(s) 411
HhaI GCGC 1 cut(s) 455
Hin1II CATG 5 cut(s) 15, 480, 674, 820, 1118
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HincII GTYRAC 2 cut(s) 265, 603
HindII GTYRAC 2 cut(s) 265, 603
HinfI GANTC 5 cut(s) 388, 500, 936, 954, 1087
HpaI GTTAAC 1 cut(s) 265
HpaII CCGG 5 cut(s) 271, 450, 521, 734, 958
HphI GGTGA 4 cut(s) 28, 71, 509, 1150
Hpy166II GTNNAC 3 cut(s) 223, 265, 603
Hpy188I TCNGA 7 cut(s) 142, 280, 443, 505, 662, 701, 970
Hpy188III TCNNGA 4 cut(s) 107, 251, 296, 1099
Hpy8I GTNNAC 3 cut(s) 223, 265, 603
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 230, 398, 919
HpyCH4III ACNGT 3 cut(s) 136, 346, 401
HpyCH4V TGCA 8 cut(s) 15, 151, 228, 641, 984, 1014, 1205, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 419, 713
HpyF3I CTNAG 2 cut(s) 297, 698
Hsp92II CATG 5 cut(s) 15, 480, 674, 820, 1118
HspAI GCGC 1 cut(s) 453
KroI GCCGGC 2 cut(s) 270, 449
KroNI GCCGGC 2 cut(s) 272, 451
KspAI GTTAAC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 801
Kzo9I GATC 4 cut(s) 121, 438, 505, 1101
LmnI GCTCC 5 cut(s) 239, 533, 1023, 1183, 1191
Lsp1109I GCAGC 5 cut(s) 199, 406, 494, 531, 700
LweI GCATC 5 cut(s) 164, 436, 545, 993, 1134
MaeI CTAG 3 cut(s) 512, 1068, 1212
MaeIII GTNAC 5 cut(s) 561, 628, 904, 1063, 1138
MalI GATC 4 cut(s) 123, 440, 507, 1103
MboI GATC 4 cut(s) 121, 438, 505, 1101
MboII GAAGA 5 cut(s) 172, 959, 1163, 1166, 1190
MfeI CAATTG 1 cut(s) 1218
MhlI GDGCHC 3 cut(s) 244, 709, 1188
MluCI AATT 8 cut(s) 375, 464, 557, 690, 768, 823, 1032, 1218
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 92, 993
MroNI GCCGGC 2 cut(s) 270, 449
MseI TTAA 8 cut(s) 54, 264, 288, 312, 374, 528, 584, 1224
MslI CAYNNNNRTG 4 cut(s) 495, 755, 1119, 1130
MspA1I CMGCKG 2 cut(s) 212, 800
MspI CCGG 5 cut(s) 271, 450, 521, 734, 958
MspR9I CCNGG 1 cut(s) 959
MunI CAATTG 1 cut(s) 1218
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 3 cut(s) 307, 419, 713
NaeI GCCGGC 2 cut(s) 272, 451
NciI CCSGG 1 cut(s) 959
NdeII GATC 4 cut(s) 121, 438, 505, 1101
NgoMIV GCCGGC 2 cut(s) 270, 449
NlaIII CATG 5 cut(s) 15, 480, 674, 820, 1118
NmuCI GTSAC 4 cut(s) 561, 628, 1063, 1138
NspI RCATGY 2 cut(s) 15, 674
OliI CACNNNNGTG 1 cut(s) 755
PaeI GCATGC 1 cut(s) 15
PaeR7I CTCGAG 1 cut(s) 40
PciI ACATGT 1 cut(s) 670
PdiI GCCGGC 2 cut(s) 272, 451
PfeI GAWTC 4 cut(s) 500, 936, 954, 1087
PflMI CCANNNNNTGG 2 cut(s) 25, 194
PkrI GCNGC 5 cut(s) 214, 421, 484, 546, 715
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PscI ACATGT 1 cut(s) 670
PshBI ATTAAT 1 cut(s) 584
Psp124BI GAGCTC 2 cut(s) 244, 1188
PspPI GGNCC 2 cut(s) 109, 256
PspXI VCTCGAGB 1 cut(s) 40
RsaI GTAC 1 cut(s) 1003
RsaNI GTAC 1 cut(s) 1002
RseI CAYNNNNRTG 4 cut(s) 495, 755, 1119, 1130
SacI GAGCTC 2 cut(s) 244, 1188
SacII CCGCGG 1 cut(s) 801
SaqAI TTAA 8 cut(s) 54, 264, 288, 312, 374, 528, 584, 1224
SatI GCNGC 5 cut(s) 213, 420, 483, 545, 714
Sau3AI GATC 4 cut(s) 121, 438, 505, 1101
Sau96I GGNCC 2 cut(s) 109, 256
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 959
SduI GDGCHC 3 cut(s) 244, 709, 1188
SetI ASST 9 cut(s) 41, 99, 149, 244, 321, 415, 617, 1020, 1188
SfaNI GCATC 5 cut(s) 164, 436, 545, 993, 1134
Sfr274I CTCGAG 1 cut(s) 40
Sfr303I CCGCGG 1 cut(s) 801
SgrBI CCGCGG 1 cut(s) 801
SinI GGWCC 1 cut(s) 109
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 4 cut(s) 495, 755, 1119, 1130
SmlI CTYRAG 3 cut(s) 40, 251, 647
SmoI CTYRAG 3 cut(s) 40, 251, 647
SpeI ACTAGT 1 cut(s) 511
SphI GCATGC 1 cut(s) 15
Sse9I AATT 8 cut(s) 375, 464, 557, 690, 768, 823, 1032, 1218
SsiI CCGC 6 cut(s) 126, 210, 781, 798, 800, 929
SspMI CTAG 3 cut(s) 512, 1068, 1212
SstI GAGCTC 2 cut(s) 244, 1188
StyD4I CCNGG 1 cut(s) 957
TaaI ACNGT 3 cut(s) 136, 346, 401
TaqI TCGA 6 cut(s) 41, 120, 728, 841, 1104, 1128
TasI AATT 8 cut(s) 375, 464, 557, 690, 768, 823, 1032, 1218
TfiI GAWTC 4 cut(s) 500, 936, 954, 1087
Tru1I TTAA 8 cut(s) 54, 264, 288, 312, 374, 528, 584, 1224
Tru9I TTAA 8 cut(s) 54, 264, 288, 312, 374, 528, 584, 1224
TscAI CASTG 4 cut(s) 30, 139, 230, 1149
TseFI GTSAC 4 cut(s) 561, 628, 1063, 1138
TseI GCWGC 5 cut(s) 212, 419, 482, 544, 713
Tsp45I GTSAC 4 cut(s) 561, 628, 1063, 1138
TspDTI ATGAA 3 cut(s) 1044, 1164, 1182
TspGWI ACGGA 2 cut(s) 208, 546
TspRI CASTG 4 cut(s) 30, 139, 230, 1149
Van91I CCANNNNNTGG 2 cut(s) 25, 194
VpaK11BI GGWCC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 584
XapI RAATTY 1 cut(s) 464
XceI RCATGY 2 cut(s) 15, 674
XhoI CTCGAG 1 cut(s) 40
XspI CTAG 3 cut(s) 512, 1068, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.