Rh3DG318900

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000722
Physical Location & Seq
Reverse (-)
34464110 .. 34472398
8289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG318900.1

Sequence Viewer

Length: 450 bp
ATGAGGAGAGAAATAGCAAACTTCTACAAAGAGAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTCGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACCAAGGGACGCATCAGGTTTTCGCTTAAGGAGTTTGTGTACAAATTCAGTTCTTCTCAGATTAGGTTCGATCAAAAAATCAACAAGGAGACCAGTGATTTTCCAATGAAAAGACCCACAGAGGAGGAAGAGACCGAGACTGGAAAAGAGCCTGATTGCTTTTATGCTGTAATTCCTGGATGGACTCCAAGATCGTCACAAAATCTCATCGCTAGTAAAATTCATATCTCTTTTTCTCTCCACAAGGCTAAAGCTATAGTTTTCAAATGTTTAGATTCTCAGATAACAATGAGGGCTTTGGACTTCAGAGTAGTTAAAAGTGTACATGGGTCATAA

Protein Analysis

149

Amino Acids

17.38

Weight (kDa)

9.57

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AcsI RAATTY 3 cut(s) 44, 158, 333
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 2 cut(s) 155, 438
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 49, 379
AjnI CCWGG 1 cut(s) 289
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 2 cut(s) 103, 368
AluI AGCT 2 cut(s) 103, 368
Alw26I GTCTC 3 cut(s) 197, 239, 245
ApoI RAATTY 3 cut(s) 44, 158, 333
AsuHPI GGTGA 1 cut(s) 82
BccI CCATC 2 cut(s) 53, 288
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 3 cut(s) 197, 239, 245
BfaI CTAG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 369
BfrI CTTAAG 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 197, 239
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bse1I ACTGG 2 cut(s) 207, 259
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 299
BseMII CTCAG 3 cut(s) 69, 185, 407
BseNI ACTGG 2 cut(s) 207, 259
BseRI GAGGAG 2 cut(s) 19, 251
BslFI GGGAC 1 cut(s) 135
BsmAI GTCTC 3 cut(s) 197, 239, 245
BsmFI GGGAC 1 cut(s) 135
Bso31I GGTCTC 2 cut(s) 197, 239
Bsp1407I TGTACA 2 cut(s) 153, 436
Bsp143I GATC 2 cut(s) 184, 305
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 70, 184, 406
BspTI CTTAAG 1 cut(s) 140
BspTNI GGTCTC 2 cut(s) 197, 239
BsrGI TGTACA 2 cut(s) 153, 436
BsrI ACTGG 2 cut(s) 207, 259
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 184, 305
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 140
BstAUI TGTACA 2 cut(s) 153, 436
BstC8I GCNNGC 2 cut(s) 40, 101
BstDEI CTNAG 3 cut(s) 78, 171, 393
BstF5I GGATG 1 cut(s) 299
BstKTI GATC 2 cut(s) 187, 308
BstMAI GTCTC 3 cut(s) 197, 239, 245
BstMBI GATC 2 cut(s) 184, 305
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 369
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 1 cut(s) 299
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 40, 101
CseI GACGC 1 cut(s) 132
Csp6I GTAC 2 cut(s) 154, 437
CviAII CATG 1 cut(s) 440
CviJI RGCY 5 cut(s) 103, 265, 362, 368, 410
CviKI_1 RGCY 5 cut(s) 103, 265, 362, 368, 410
CviQI GTAC 2 cut(s) 154, 437
DdeI CTNAG 3 cut(s) 78, 171, 393
DpnI GATC 2 cut(s) 186, 307
DpnII GATC 2 cut(s) 184, 305
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 2 cut(s) 197, 239
Eco57I CTGAAG 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 443
FaiI YATR 6 cut(s) 108, 279, 339, 371, 441, 448
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 439
FauI CCCGC 1 cut(s) 31
FokI GGATG 1 cut(s) 306
FspBI CTAG 1 cut(s) 327
HgaI GACGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 443
HinfI GANTC 3 cut(s) 80, 298, 389
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 154, 437
Hpy188I TCNGA 4 cut(s) 79, 174, 396, 422
Hpy8I GTNNAC 2 cut(s) 154, 437
HpyAV CCTTC 1 cut(s) 28
HpyF3I CTNAG 3 cut(s) 78, 171, 393
Hsp92II CATG 1 cut(s) 443
Kzo9I GATC 2 cut(s) 184, 305
LpnPI CCDG 6 cut(s) 115, 220, 240, 276, 279, 303
LweI GCATC 1 cut(s) 135
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 309
MalI GATC 2 cut(s) 186, 307
MboI GATC 2 cut(s) 184, 305
MboII GAAGA 3 cut(s) 68, 159, 254
MluCI AATT 4 cut(s) 44, 158, 285, 333
MlyI GAGTC 2 cut(s) 89, 292
MnlI CCTC 4 cut(s) 87, 229, 232, 399
MseI TTAA 2 cut(s) 141, 429
MspCI CTTAAG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
NdeII GATC 2 cut(s) 184, 305
NlaIII CATG 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 389
PfoI TCCNGGA 1 cut(s) 289
PleI GAGTC 2 cut(s) 88, 292
PpsI GAGTC 2 cut(s) 88, 292
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
RsaI GTAC 2 cut(s) 155, 438
RsaNI GTAC 2 cut(s) 154, 437
SaqAI TTAA 2 cut(s) 141, 429
Sau3AI GATC 2 cut(s) 184, 305
SchI GAGTC 2 cut(s) 89, 292
ScrFI CCNGG 1 cut(s) 291
SetI ASST 4 cut(s) 105, 134, 182, 370
SfaNI GCATC 1 cut(s) 135
SfcI CTRYAG 1 cut(s) 369
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 4 cut(s) 44, 158, 285, 333
SsiI CCGC 1 cut(s) 38
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 117
TaqI TCGA 1 cut(s) 183
TaqII GACCGA 1 cut(s) 263
TasI AATT 4 cut(s) 44, 158, 285, 333
TatI WGTACW 2 cut(s) 153, 436
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 2 cut(s) 141, 429
Tru9I TTAA 2 cut(s) 141, 429
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 2 cut(s) 236, 326
TspRI CASTG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 140
XapI RAATTY 3 cut(s) 44, 158, 333
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.