Rroxscaffold_4G00324640

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000722
Physical Location & Seq
Forward (+)
56178334 .. 56179599
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324640.1

Sequence Viewer

Length: 1266 bp
ATGACCAAAGAACTCTCAACCCTCTCTCTTTTGGACCAAATCTTCCCTCCTACCTTATACCCTGCTATCATATATTTCTACTCCAGTGATCGTTTTCCTTTAAATGATGTTTCGGAGAGCTTACAAACATCGCTATCCAAGGCTTTGGTTCAATTTTATCCCCTGGCCGGCCGACTAAATGGCCCTGCTTCCGTCGACTGCAATGATGAAGGGGCTTATTTTCTTGAGGCCCAAGTCAACTGCCAGCTCTTGGACTTGCTTAGACTTCCTGAACACAGCTTACTCAACAACCTCATCCCGGAGTTTGATCCTCAAACTGCCCATTCCGCCTTAGGTTCTGCAGTTTTGCTTGTCCAAATGAGTCGTTTTAACTGCGGAGGAATTGCCCTTGCTGTGTCGCTGTCGCACAAGATCGCAGATGGAACCTCATATCACATATTTGTACGAGCATGGGCAGACATACATCGTGACCATGAATATGAGAGTCAACTAATGGTACCACAGTTTAACGGAGCATCTCTGTTGCCGGCTAAAGACTCCTTTGTAAACAACTTAGGGTTACCAAAGTGGTTGCCAGAGTATCAAGGTTTAACTACTAGGAGGTTCGTGTTTGATGTCACGAAGATCGCCAATCTCAAGGCTAAAATTGGAGGTACAAATGTACAACTTGTTTCAGCAATCATCTTGAAAAGTGCTCGTGCTGCTTCTTATCAATCCAAGCCAGAGACGAGTTCAACTACAACAGTGTTGTCGCAAGCGGTAAGTTTCCGTAGAAGTATGGGTTCGGTAGTAGGGGAAAATGCCATGGGAAATTGGTTTTGGCCAGTTCAAGTGGTATTCAAACCAAACGAGATGGAACTACATGAGTTGGTGGCAAATATGAGGAGAGACATAACAGACTTCTACAACGAAAAGGCGGGCAAATTCAAAGGGGAAGATGGGTTCTTGGTGATGTCTGAGTTGTTTAGAGAGAGGGGCGAGCTTTATAGAAACACTAAGGGATGCATCAGTGTTTATAGGGCCACAAGTTTGTGCAAGCTCCCTGTATATGAAGTTGACTTTGGGTGGGGGAAACCAACATGGGTTACTGGCCAAAGCAACCAGAAGAACGTATTTGTGCTGTTTGATACAAAACGTGGCGATGGGATCGAAGCATGGGTGACACTTGATGAAGAAGAGATGGCCATATTTGAGACTGATAAGGAGCTTCTTTCATTTGCTTCTCTAAACCCTAGTGCTAGTGTCAATCATCACTCTCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

421

Amino Acids

47.11

Weight (kDa)

5.78

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 403 4.1e-67 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 496
AccB1I GGYRCC 1 cut(s) 496
AccB7I CCANNNNNTGG 1 cut(s) 250
AccI GTMKAC 1 cut(s) 195
AciI CCGC 4 cut(s) 327, 375, 758, 917
AclWI GGATC 2 cut(s) 302, 1154
AcoI YGGCCR 5 cut(s) 165, 169, 821, 1090, 1182
AcsI RAATTY 1 cut(s) 923
AfaI GTAC 4 cut(s) 444, 498, 655, 663
AfiI CCNNNNNNNGG 3 cut(s) 167, 250, 298
AgsI TTSAA 6 cut(s) 152, 688, 735, 830, 841, 928
AjnI CCWGG 1 cut(s) 162
AjuI GAANNNNNNNTTGG 4 cut(s) 802, 834, 1044, 1076
AloI GAACNNNNNNTCC 2 cut(s) 926, 958
AluBI AGCT 6 cut(s) 120, 247, 279, 982, 1039, 1207
AluI AGCT 6 cut(s) 120, 247, 279, 982, 1039, 1207
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 3 cut(s) 719, 882, 1187
AlwI GGATC 2 cut(s) 302, 1154
AoxI GGCC 8 cut(s) 165, 169, 181, 228, 821, 1020, 1090, 1182
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 1 cut(s) 923
Asp718I GGTACC 1 cut(s) 496
AspS9I GGNCC 4 cut(s) 34, 182, 229, 1020
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 2 cut(s) 961, 1171
AvaII GGWCC 1 cut(s) 34
AxyI CCTNAGG 1 cut(s) 331
BaeI ACNNNNGTAYC 4 cut(s) 488, 521, 645, 678
BalI TGGCCA 3 cut(s) 823, 1092, 1184
BanI GGYRCC 1 cut(s) 496
BauI CACGAG 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 1 cut(s) 688
BccI CCATC 5 cut(s) 413, 847, 932, 1136, 1174
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 299
BcoDI GTCTC 3 cut(s) 719, 882, 1187
BfaI CTAG 3 cut(s) 597, 1233, 1239
BfmI CTRYAG 1 cut(s) 339
BisI GCNGC 1 cut(s) 702
BlsI GCNGC 1 cut(s) 703
Bme1390I CCNGG 2 cut(s) 164, 299
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 4 cut(s) 34, 182, 229, 1020
BmiI GGNNCC 2 cut(s) 424, 498
BmrFI CCNGG 2 cut(s) 164, 299
BmsI GCATC 3 cut(s) 524, 992, 1014
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 245, 620
BpuMI CCSGG 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 138, 162, 804
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 250, 298
Bse118I RCCGGY 2 cut(s) 167, 526
Bse1I ACTGG 3 cut(s) 84, 824, 1093
Bse21I CCTNAGG 1 cut(s) 331
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 3 cut(s) 138, 162, 804
BseGI GGATG 2 cut(s) 294, 1007
BseLI CCNNNNNNNGG 3 cut(s) 167, 250, 298
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 948
BseNI ACTGG 3 cut(s) 84, 824, 1093
BseRI GAGGAG 1 cut(s) 898
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 688
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 8 cut(s) 167, 171, 183, 230, 823, 1022, 1092, 1184
BshNI GGYRCC 1 cut(s) 496
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 3 cut(s) 168, 299, 527
BslI CCNNNNNNNGG 3 cut(s) 167, 250, 298
BsmAI GTCTC 3 cut(s) 719, 882, 1187
BsmBI CGTCTC 1 cut(s) 719
BsnI GGCC 8 cut(s) 167, 171, 183, 230, 823, 1022, 1092, 1184
Bsp1286I GDGCHC 1 cut(s) 697
Bsp1407I TGTACA 1 cut(s) 661
Bsp143I GATC 5 cut(s) 88, 307, 411, 624, 1146
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 4 cut(s) 327, 375, 758, 917
BspANI GGCC 8 cut(s) 167, 171, 183, 230, 823, 1022, 1092, 1184
BspCNI CTCAG 1 cut(s) 949
BspLI GGNNCC 2 cut(s) 424, 498
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 2 cut(s) 302, 1154
BspT107I GGYRCC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 2 cut(s) 167, 526
BsrGI TGTACA 1 cut(s) 661
BsrI ACTGG 3 cut(s) 84, 824, 1093
BssAI RCCGGY 2 cut(s) 167, 526
BssECI CCNNGG 3 cut(s) 138, 162, 804
BssMI GATC 5 cut(s) 88, 307, 411, 624, 1146
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 2 cut(s) 138, 804
Bst2BI CACGAG 1 cut(s) 696
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 2 cut(s) 504, 745
Bst6I CTCTTC 1 cut(s) 1170
BstAUI TGTACA 1 cut(s) 661
BstC8I GCNNGC 7 cut(s) 169, 245, 528, 756, 919, 980, 1037
BstDEI CTNAG 5 cut(s) 260, 331, 553, 957, 996
BstDSI CCRYGG 1 cut(s) 804
BstEII GGTNACC 1 cut(s) 558
BstF5I GGATG 2 cut(s) 294, 1007
BstKTI GATC 5 cut(s) 91, 310, 414, 627, 1149
BstMAI GTCTC 3 cut(s) 719, 882, 1187
BstMBI GATC 5 cut(s) 88, 307, 411, 624, 1146
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 326, 701
BstNI CCWGG 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 558
BstSCI CCNGG 2 cut(s) 162, 297
BstSFI CTRYAG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 145
BstZI CGGCCG 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 331
BsuRI GGCC 8 cut(s) 167, 171, 183, 230, 823, 1022, 1092, 1184
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 2 cut(s) 114, 1155
BtsCI GGATG 2 cut(s) 294, 1007
BtsIMutI CAGTG 3 cut(s) 91, 750, 1015
Cac8I GCNNGC 7 cut(s) 169, 245, 528, 756, 919, 980, 1037
Cfr10I RCCGGY 2 cut(s) 167, 526
Cfr13I GGNCC 4 cut(s) 34, 182, 229, 1020
Csp6I GTAC 4 cut(s) 443, 497, 654, 662
CviAII CATG 6 cut(s) 450, 473, 805, 863, 1080, 1155
CviQI GTAC 4 cut(s) 443, 497, 654, 662
DdeI CTNAG 5 cut(s) 260, 331, 553, 957, 996
DpnI GATC 5 cut(s) 90, 309, 413, 626, 1148
DpnII GATC 5 cut(s) 88, 307, 411, 624, 1146
DraI TTTAAA 1 cut(s) 102
EaeI YGGCCR 5 cut(s) 165, 169, 821, 1090, 1182
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 1170
EarI CTCTTC 1 cut(s) 1170
EciI GGCGGA 1 cut(s) 316
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 138, 804
Eco47I GGWCC 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 558
EcoO65I GGTNACC 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 2 cut(s) 138, 804
EcoT22I ATGCAT 1 cut(s) 1007
ErhI CCWWGG 2 cut(s) 138, 804
Esp3I CGTCTC 1 cut(s) 719
FaeI CATG 6 cut(s) 453, 476, 808, 866, 1083, 1158
FatI CATG 6 cut(s) 449, 472, 804, 862, 1079, 1154
FauI CCCGC 1 cut(s) 910
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 2 cut(s) 281, 1014
FseI GGCCGGCC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 3 cut(s) 597, 1233, 1239
GluI GCNGC 1 cut(s) 702
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 8 cut(s) 167, 171, 183, 230, 823, 1022, 1092, 1184
HapII CCGG 3 cut(s) 168, 299, 527
Hin1II CATG 6 cut(s) 453, 476, 808, 866, 1083, 1158
HincII GTYRAC 4 cut(s) 196, 238, 488, 1057
HindII GTYRAC 4 cut(s) 196, 238, 488, 1057
HinfI GANTC 3 cut(s) 361, 484, 536
HpaII CCGG 3 cut(s) 168, 299, 527
HphI GGTGA 2 cut(s) 961, 1171
Hpy166II GTNNAC 5 cut(s) 196, 238, 488, 547, 1057
Hpy188I TCNGA 2 cut(s) 115, 958
Hpy188III TCNNGA 5 cut(s) 224, 269, 467, 619, 685
Hpy8I GTNNAC 5 cut(s) 196, 238, 488, 547, 1057
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 504, 745
HpyCH4IV ACGT 2 cut(s) 1110, 1135
HpyCH4V TGCA 4 cut(s) 201, 341, 1005, 1035
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 701
HpyF3I CTNAG 5 cut(s) 260, 331, 553, 957, 996
HpySE526I ACGT 2 cut(s) 1110, 1135
Hsp92II CATG 6 cut(s) 453, 476, 808, 866, 1083, 1158
KpnI GGTACC 1 cut(s) 500
KroI GCCGGC 2 cut(s) 167, 526
KroNI GCCGGC 2 cut(s) 169, 528
Kzo9I GATC 5 cut(s) 88, 307, 411, 624, 1146
LmnI GCTCC 3 cut(s) 512, 1044, 1204
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 3 cut(s) 524, 992, 1014
MaeI CTAG 3 cut(s) 597, 1233, 1239
MaeII ACGT 2 cut(s) 1110, 1135
MaeIII GTNAC 5 cut(s) 467, 558, 616, 1084, 1159
MalI GATC 5 cut(s) 90, 309, 413, 626, 1148
MboI GATC 5 cut(s) 88, 307, 411, 624, 1146
MboII GAAGA 6 cut(s) 34, 634, 947, 1117, 1184, 1187
MhlI GDGCHC 1 cut(s) 697
MlsI TGGCCA 3 cut(s) 823, 1092, 1184
MluCI AATT 5 cut(s) 152, 381, 645, 811, 923
MluNI TGGCCA 3 cut(s) 823, 1092, 1184
MlyI GAGTC 3 cut(s) 370, 493, 530
Mox20I TGGCCA 3 cut(s) 823, 1092, 1184
Mph1103I ATGCAT 1 cut(s) 1007
MroNI GCCGGC 2 cut(s) 167, 526
MscI TGGCCA 3 cut(s) 823, 1092, 1184
MseI TTAA 4 cut(s) 101, 369, 507, 590
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 3 cut(s) 823, 1092, 1184
MspI CCGG 3 cut(s) 168, 299, 527
MspR9I CCNGG 2 cut(s) 164, 299
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 326, 701
NaeI GCCGGC 2 cut(s) 169, 528
NciI CCSGG 1 cut(s) 299
NcoI CCATGG 1 cut(s) 804
NdeII GATC 5 cut(s) 88, 307, 411, 624, 1146
NgoMIV GCCGGC 2 cut(s) 167, 526
NlaIII CATG 6 cut(s) 453, 476, 808, 866, 1083, 1158
NlaIV GGNNCC 2 cut(s) 424, 498
NmuCI GTSAC 3 cut(s) 467, 616, 1159
NsiI ATGCAT 1 cut(s) 1007
PdiI GCCGGC 2 cut(s) 169, 528
PflMI CCANNNNNTGG 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 297
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 3 cut(s) 369, 492, 530
PpsI GAGTC 3 cut(s) 369, 492, 530
Psp6I CCWGG 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 558
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 424, 498
PspPI GGNCC 4 cut(s) 34, 182, 229, 1020
PsrI GAACNNNNNNTAC 2 cut(s) 264, 296
PstI CTGCAG 1 cut(s) 343
RigI GGCCGGCC 1 cut(s) 171
RsaI GTAC 4 cut(s) 444, 498, 655, 663
RsaNI GTAC 4 cut(s) 443, 497, 654, 662
RseI CAYNNNNRTG 1 cut(s) 477
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 4 cut(s) 101, 369, 507, 590
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 5 cut(s) 88, 307, 411, 624, 1146
Sau96I GGNCC 4 cut(s) 34, 182, 229, 1020
SchI GAGTC 3 cut(s) 370, 493, 530
ScrFI CCNGG 2 cut(s) 164, 299
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 3 cut(s) 524, 992, 1014
SfcI CTRYAG 1 cut(s) 339
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 2 cut(s) 224, 635
SmoI CTYRAG 2 cut(s) 224, 635
Sse9I AATT 5 cut(s) 152, 381, 645, 811, 923
SsiI CCGC 4 cut(s) 327, 375, 758, 917
SspMI CTAG 3 cut(s) 597, 1233, 1239
StyD4I CCNGG 2 cut(s) 162, 297
StyI CCWWGG 2 cut(s) 138, 804
TaaI ACNGT 2 cut(s) 504, 745
TaiI ACGT 2 cut(s) 1113, 1138
TaqI TCGA 2 cut(s) 195, 1149
TasI AATT 5 cut(s) 152, 381, 645, 811, 923
TatI WGTACW 1 cut(s) 661
Tru1I TTAA 4 cut(s) 101, 369, 507, 590
Tru9I TTAA 4 cut(s) 101, 369, 507, 590
TscAI CASTG 3 cut(s) 91, 750, 1015
TseFI GTSAC 3 cut(s) 467, 616, 1159
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 3 cut(s) 467, 616, 1159
TspDTI ATGAA 5 cut(s) 222, 489, 1065, 1185, 1203
TspGWI ACGGA 3 cut(s) 181, 525, 758
TspRI CASTG 3 cut(s) 91, 750, 1015
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 923
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 3 cut(s) 597, 1233, 1239
Zsp2I ATGCAT 1 cut(s) 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.