Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000722

Physical Location & Seq

Genomic Coordinates Forward (+)

15936733 .. 15937575

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCCGACGCATATTACAAATTTATACAAACAGGGGCAGCCATGCATACATCGTGGTGAATCCGATCAACTAGTTCTACCGGAGTTTAATGGAGCATCTGTACTGCCTCCTAGAGAATTGTCACTCCCAAACAACTTGGGATTAATCCCAAATCAAAAATTGACAACAAAGAGAAGTTCTCTTGTTGCTTCTAATAAATCGAAGCCAGAGACTACTTCAAGCACAGCTGTGTTGTCCCAAATAGTAAGTTTCCGCAACAGAATAGTCCCTGTGGTAGCACCAAATGTCATGGGTAATTGGTTTTGGTCGGTTCAAGTGGTGTTCAAACAAAACGAGACAGAACTACAAGAGTTGGTTGCTAAAATGAGGAAAGGAGTAATAGACTTCTACATGGAGAAGGAGGACAGATTCAAAGGCAAAGATGGATTTCGGGTGTTGTCCGAGTTACTTAGAGAGAGGGGTGAGTTCTTTAAGAGCACAAAGGGGTGCATCAATCTTTATAGGGGTACAAGTTTGTGCAAGCTCCCGGCATATGAAATTGATTTTGGTTGGGGGAAACCAACTTGGGTCACTAGCCAAAGCAACCACAAGAACCTATTTCTCCTGATCGACACAAAACATGGAGATGGCATCGAAGTGTGGGTGACACTGGATAAAGAAGAAATGGCTATATTTGAGAGTGAAGAAGAGCTCCTTTCATTTGCTTGTGCAAACCCTAGTGAAATTGTTAATCATCAATCTCACTCTCGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

252

Amino Acids

28.5

Weight (kDa)

7.69

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	66 - 231	3.4e-21	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000722)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27601 FvH4_4g17130
malus_domestica	MD07G1048300.v1.1 MD07G1095200.v1.1 MD07G1095500.v1.1 MD07G1095700.v1.1 MD07G1096300.v1.1 MD07G1096400.v1.1 MD09G1062300.v1.1 MD14G1082000.v1.1
prunus_persica	Prupe.7G029300_v2.0.a1 Prupe.7G030000_v2.0.a1
pyrus_communis	pycom07g07870 pycom07g07910 pycom07g07950 pycom111g05260 pycom14g07130 pycom17g05610
rosa_chinensis	RchiOBHm_Chr1g0325581 RchiOBHm_Chr3g0487911 RchiOBHm_Chr3g0487931 RchiOBHm_Chr3g0487961 RchiOBHm_Chr3g0487971 RchiOBHm_Chr7g0216431 RchiOBHm_Chr7g0216441
rosa_laevigata	RLG00000002570 RLG00000003149 RLG00000022955 RLG00000022960 RLG00000022961 RLG00000022964 RLG00000022965 RLG00000022966 RLG00000030119 RLG00000030129
rosa_multiflora	Rmu_sc0004155.1_g000011 Rmu_sc0004448.1_g000015 Rmu_sc0004448.1_g000025 Rmu_sc0004448.1_g000031 Rmu_sc0006722.1_g000006
rosa_roxburghii	Rroxscaffold_3G00243230 Rroxscaffold_3G00243240 Rroxscaffold_3G00250720 Rroxscaffold_3G00252280 Rroxscaffold_4G00324640 Rroxscaffold_6G00394390 Rroxscaffold_6G00394400 Rroxscaffold_6G00394430 Rroxscaffold_6G00394440
rosa_rugosa	Rorug01G0053000 Rorug03G0237300 Rorug03G0237400 Rorug07G0160300 Rorug07G0160300 Rorug07G0160300
rosa_samantha	Rh1BG056200 Rh1DG073800 Rh3AG285000 Rh3AG285200 Rh3AG285400 Rh3CG320500 Rh3CG320800 Rh3DG318900 Rh3DG319000 Rh7AG299400 Rh7AG299500 Rh7BG290900 Rh7DG300800
rosa_wichuraiana	Rw0G004660 Rw0G004670 Rw1G005690 Rw3G025280 Rw7G025450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	19
AfaI	GTAC	2 cut(s)	102, 508
AgsI	TTSAA	4 cut(s)	219, 314, 325, 412
AhlI	ACTAGT	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	3 cut(s)	227, 523, 691
AluI	AGCT	3 cut(s)	227, 523, 691
Alw21I	GWGCWC	2 cut(s)	479, 693
Alw26I	GTCTC	2 cut(s)	203, 329
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	19
AseI	ATTAAT	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	527
AsuHPI	GGTGA	3 cut(s)	68, 473, 655
BanII	GRGCYC	1 cut(s)	693
Bbv12I	GWGCWC	2 cut(s)	479, 693
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	2 cut(s)	416, 620
BcnI	CCSGG	1 cut(s)	527
BcoDI	GTCTC	2 cut(s)	203, 329
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	4 cut(s)	71, 111, 573, 717
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	527
BmrFI	CCNGG	1 cut(s)	527
BmsI	GCATC	3 cut(s)	104, 498, 639
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpuMI	CCSGG	1 cut(s)	527
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse1I	ACTGG	1 cut(s)	654
BseNI	ACTGG	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	49
BsiHKAI	GWGCWC	2 cut(s)	479, 693
BsiSI	CCGG	2 cut(s)	80, 527
BslFI	GGGAC	2 cut(s)	220, 251
BsmAI	GTCTC	2 cut(s)	203, 329
BsmFI	GGGAC	2 cut(s)	220, 251
Bsp1286I	GDGCHC	2 cut(s)	479, 693
Bsp143I	GATC	2 cut(s)	64, 606
BspACI	CCGC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	681
BsrI	ACTGG	1 cut(s)	654
BssMI	GATC	2 cut(s)	64, 606
Bst6I	CTCTTC	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	449
BstKTI	GATC	2 cut(s)	67, 609
BstMAI	GTCTC	2 cut(s)	203, 329
BstMBI	GATC	2 cut(s)	64, 606
BstSCI	CCNGG	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	521
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	101, 507
CviAII	CATG	4 cut(s)	42, 289, 391, 620
CviJI	RGCY	7 cut(s)	40, 205, 227, 523, 576, 668, 691
CviKI_1	RGCY	7 cut(s)	40, 205, 227, 523, 576, 668, 691
CviQI	GTAC	2 cut(s)	101, 507
DdeI	CTNAG	1 cut(s)	449
DpnI	GATC	2 cut(s)	66, 608
DpnII	GATC	2 cut(s)	64, 606
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Ecl136II	GAGCTC	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	693
Eco53kI	GAGCTC	1 cut(s)	691
EcoICRI	GAGCTC	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	693
FaeI	CATG	4 cut(s)	45, 292, 394, 623
FalI	AAGNNNNNCTT	2 cut(s)	678, 710
FaqI	GGGAC	2 cut(s)	220, 251
FatI	CATG	4 cut(s)	41, 288, 390, 619
FauNDI	CATATG	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	4 cut(s)	71, 111, 573, 717
GluI	GCNGC	1 cut(s)	38
HapII	CCGG	2 cut(s)	80, 527
HgaI	GACGC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	45, 292, 394, 623
HinfI	GANTC	2 cut(s)	59, 408
HpaII	CCGG	2 cut(s)	80, 527
HphI	GGTGA	3 cut(s)	68, 473, 655
Hpy188I	TCNGA	2 cut(s)	64, 442
Hpy188III	TCNNGA	2 cut(s)	604, 747
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	45, 489, 519, 710
HpyF3I	CTNAG	1 cut(s)	449
Hsp92II	CATG	4 cut(s)	45, 292, 394, 623
Kzo9I	GATC	2 cut(s)	64, 606
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	3 cut(s)	92, 528, 696
LpnPI	CCDG	7 cut(s)	17, 93, 219, 282, 540, 617, 635
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	3 cut(s)	104, 498, 639
MaeI	CTAG	4 cut(s)	71, 111, 573, 717
MaeIII	GTNAC	4 cut(s)	120, 444, 568, 643
MalI	GATC	2 cut(s)	66, 608
MboI	GATC	2 cut(s)	64, 606
MboII	GAAGA	3 cut(s)	671, 695, 698
MhlI	GDGCHC	2 cut(s)	479, 693
MluCI	AATT	6 cut(s)	19, 116, 158, 295, 537, 723
MnlI	CCTC	4 cut(s)	117, 360, 394, 450
Mph1103I	ATGCAT	1 cut(s)	47
MseI	TTAA	4 cut(s)	87, 143, 471, 729
MslI	CAYNNNNRTG	4 cut(s)	54, 227, 624, 635
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	80, 527
MspR9I	CCNGG	1 cut(s)	527
NciI	CCSGG	1 cut(s)	527
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	2 cut(s)	64, 606
NlaIII	CATG	4 cut(s)	45, 292, 394, 623
NmuCI	GTSAC	3 cut(s)	120, 568, 643
NsiI	ATGCAT	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	227
PciSI	GCTCTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	59, 408
PkrI	GCNGC	1 cut(s)	39
PshBI	ATTAAT	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	102, 508
RsaNI	GTAC	2 cut(s)	101, 507
RseI	CAYNNNNRTG	4 cut(s)	54, 227, 624, 635
SacI	GAGCTC	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	681
SaqAI	TTAA	4 cut(s)	87, 143, 471, 729
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	64, 606
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	2 cut(s)	479, 693
SetI	ASST	4 cut(s)	229, 525, 597, 693
SfaNI	GCATC	3 cut(s)	104, 498, 639
SmiMI	CAYNNNNRTG	4 cut(s)	54, 227, 624, 635
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	6 cut(s)	19, 116, 158, 295, 537, 723
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	4 cut(s)	71, 111, 573, 717
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	525
TaqI	TCGA	4 cut(s)	200, 609, 633, 748
TasI	AATT	6 cut(s)	19, 116, 158, 295, 537, 723
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	2 cut(s)	59, 408
Tru1I	TTAA	4 cut(s)	87, 143, 471, 729
Tru9I	TTAA	4 cut(s)	87, 143, 471, 729
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	3 cut(s)	120, 568, 643
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	3 cut(s)	120, 568, 643
TspDTI	ATGAA	2 cut(s)	549, 687
TspRI	CASTG	1 cut(s)	654
VspI	ATTAAT	1 cut(s)	143
XapI	RAATTY	1 cut(s)	19
XspI	CTAG	4 cut(s)	71, 111, 573, 717
Zsp2I	ATGCAT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.