pycom17g05610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000722
Physical Location & Seq
Forward (+)
4000988 .. 4003322
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05610.3

Sequence Viewer

Length: 645 bp
ATGGATAAGTCGTTCTTCACCGTCTCTCGCCCCATCCACAAGAAATATAGATTTTTTAATGTATTCGAACATACTACATTCGCGGTCCGCCACGTTTATAATCCTGTATCCATTAAACGCACCGGCTTGTTCCACCAATATAGGAAGCTAACGAGCAAAAAGCCGCAAACTTTCGTTTCTTCAGAGCGTGTTCGAAGTGTCTCTCACACTCTCTCAATCTCTCTCGCCGTTTCTTCTGCTCTCGAGAAAGCTCAGAGGAGGCGCCATAACAACCGCCATGAGTGCAGCGGCCGGAGTTCCTTCTCGGGCGGAGGTGCTCACGATGTTCCGCTCTTTTCTCCGAGTGGCTCGCAAATTCACCGACTACAACATCAGGGAGTACACGAAACGCAGAGCCGTCGACGCGTTTCGTCAGAATCGGAACCTTTCGGACCCGTCTGCCATATCCGCCGCGTTCTCAGATGGCAAGGCTCAGCTGGAGGTCGCCAAGCGGCAGGCTGTTATTTACTCTCTCTACGCCCCCAAGCTCAAGAGCGTCATGGAGGTTCAGAACCCAATCAAGCACCGAAATTGATTAATTTCCGGGTTTGCGAAATTTTCACTTCTGTTGACGAGCGATTTCAGGGAACATTTGTAATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

24.39

Weight (kDa)

11.01

Isoelectric Point (pI)

70.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 400
AccII CGCG 3 cut(s) 83, 405, 453
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 354, 594
AcuI CTGAAG 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 1 cut(s) 381
AflIII ACRYGT 1 cut(s) 403
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 4 cut(s) 148, 251, 476, 527
AluI AGCT 4 cut(s) 148, 251, 476, 527
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 2 cut(s) 28, 205
Ama87I CYCGRG 2 cut(s) 242, 304
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 2 cut(s) 354, 594
AseI ATTAAT 1 cut(s) 576
AspLEI GCGC 1 cut(s) 264
AspS9I GGNCC 2 cut(s) 85, 431
AsuC2I CCSGG 1 cut(s) 584
AsuHPI GGTGA 2 cut(s) 10, 350
AsuII TTCGAA 2 cut(s) 66, 193
AvaI CYCGRG 2 cut(s) 242, 304
AvaII GGWCC 2 cut(s) 85, 431
BanI GGYRCC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 41, 456
BceAI ACGGC 2 cut(s) 212, 381
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciVI GTATCC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 28, 205
BfmI CTRYAG 1 cut(s) 641
BfoI RGCGCY 1 cut(s) 265
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 5 cut(s) 164, 286, 289, 451, 492
BlpI GCTNAGC 1 cut(s) 472
BlsI GCNGC 5 cut(s) 165, 287, 290, 452, 493
Bme1390I CCNGG 1 cut(s) 584
Bme18I GGWCC 2 cut(s) 85, 431
BmeT110I CYCGRG 2 cut(s) 242, 304
BmgT120I GGNCC 2 cut(s) 85, 431
BmiI GGNNCC 3 cut(s) 263, 423, 433
BmrFI CCNGG 1 cut(s) 584
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 472
Bpu14I TTCGAA 2 cut(s) 66, 193
BpuEI CTTGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 584
BsaHI GRCGYC 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 122
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 266, 472, 486
BseRI GAGGAG 1 cut(s) 271
BseX3I CGGCCG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 297
BsgI GTGCAG 1 cut(s) 304
Bsh1236I CGCG 3 cut(s) 83, 405, 453
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 319
BsiHKCI CYCGRG 2 cut(s) 242, 304
BsiSI CCGG 3 cut(s) 123, 292, 583
BsmAI GTCTC 2 cut(s) 28, 205
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 2 cut(s) 242, 304
Bsp119I TTCGAA 2 cut(s) 66, 193
Bsp1286I GDGCHC 1 cut(s) 319
Bsp1720I GCTNAGC 1 cut(s) 472
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 3 cut(s) 265, 471, 485
BspFNI CGCG 3 cut(s) 83, 405, 453
BspLI GGNNCC 3 cut(s) 263, 423, 433
BspT104I TTCGAA 2 cut(s) 66, 193
BspT107I GGYRCC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 331
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssNI GRCGYC 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 22
BstACI GRCGYC 1 cut(s) 262
BstBI TTCGAA 2 cut(s) 66, 193
BstC8I GCNNGC 2 cut(s) 350, 496
BstDEI CTNAG 3 cut(s) 252, 458, 472
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 3 cut(s) 83, 405, 453
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 28, 205
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 282, 402, 447
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 641
BstUI CGCG 3 cut(s) 83, 405, 453
BstV1I GCAGC 1 cut(s) 297
BstZI CGGCCG 1 cut(s) 289
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 350, 496
CfoI GCGC 1 cut(s) 264
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 85, 431
CpoI CGGWCCG 1 cut(s) 85
CseI GACGC 2 cut(s) 411, 524
Csp6I GTAC 1 cut(s) 380
CspI CGGWCCG 1 cut(s) 85
CviAII CATG 2 cut(s) 278, 539
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 3 cut(s) 252, 458, 472
DinI GGCGCC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
EciI GGCGGA 3 cut(s) 77, 324, 437
EclXI CGGCCG 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 85, 431
Eco52I CGGCCG 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 2 cut(s) 242, 304
EgeI GGCGCC 1 cut(s) 263
EheI GGCGCC 1 cut(s) 263
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 2 cut(s) 281, 542
FaiI YATR 8 cut(s) 48, 72, 99, 141, 267, 279, 444, 540
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 2 cut(s) 277, 538
FblI GTMKAC 1 cut(s) 400
Fnu4HI GCNGC 5 cut(s) 164, 286, 289, 451, 492
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 5 cut(s) 164, 286, 289, 451, 492
GlaI GCGC 1 cut(s) 263
GluI GCNGC 5 cut(s) 164, 286, 289, 451, 492
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 1 cut(s) 291
HapII CCGG 3 cut(s) 123, 292, 583
HgaI GACGC 2 cut(s) 411, 524
HhaI GCGC 1 cut(s) 264
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 2 cut(s) 281, 542
Hin6I GCGC 1 cut(s) 262
HinP1I GCGC 1 cut(s) 262
HincII GTYRAC 2 cut(s) 401, 610
HindII GTYRAC 2 cut(s) 401, 610
HinfI GANTC 1 cut(s) 416
HpaII CCGG 3 cut(s) 123, 292, 583
HphI GGTGA 2 cut(s) 10, 350
Hpy166II GTNNAC 3 cut(s) 382, 401, 610
Hpy188I TCNGA 8 cut(s) 184, 255, 342, 415, 421, 431, 461, 550
Hpy188III TCNNGA 4 cut(s) 242, 244, 320, 530
Hpy8I GTNNAC 3 cut(s) 382, 401, 610
Hpy99I CGWCG 2 cut(s) 402, 405
HpyAV CCTTC 1 cut(s) 310
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 402, 447
HpyF3I CTNAG 3 cut(s) 252, 458, 472
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 2 cut(s) 281, 542
HspAI GCGC 1 cut(s) 262
KasI GGCGCC 1 cut(s) 261
LpnPI CCDG 8 cut(s) 117, 136, 305, 359, 462, 480, 596, 608
Lsp1109I GCAGC 1 cut(s) 297
MaeII ACGT 1 cut(s) 93
MbiI CCGCTC 1 cut(s) 331
MboII GAAGA 3 cut(s) 7, 171, 225
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 4 cut(s) 354, 569, 577, 594
MluI ACGCGT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 262
MnlI CCTC 5 cut(s) 249, 252, 305, 473, 536
MseI TTAA 3 cut(s) 57, 114, 576
MspA1I CMGCKG 2 cut(s) 288, 476
MspI CCGG 3 cut(s) 123, 292, 583
MspR9I CCNGG 1 cut(s) 584
MvnI CGCG 3 cut(s) 83, 405, 453
MwoI GCNNNNNNNGC 3 cut(s) 282, 402, 447
NarI GGCGCC 1 cut(s) 262
NciI CCSGG 1 cut(s) 584
NlaIII CATG 2 cut(s) 281, 542
NlaIV GGNNCC 3 cut(s) 263, 423, 433
NspV TTCGAA 2 cut(s) 66, 193
PaeR7I CTCGAG 1 cut(s) 242
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 5 cut(s) 165, 287, 290, 452, 493
PluTI GGCGCC 1 cut(s) 265
PshBI ATTAAT 1 cut(s) 576
PsiI TTATAA 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 263, 423, 433
PspPI GGNCC 2 cut(s) 85, 431
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
Rsr2I CGGWCCG 1 cut(s) 85
RsrII CGGWCCG 1 cut(s) 85
SalI GTCGAC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 57, 114, 576
SatI GCNGC 5 cut(s) 164, 286, 289, 451, 492
Sau96I GGNCC 2 cut(s) 85, 431
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 1 cut(s) 319
SetI ASST 9 cut(s) 96, 150, 253, 316, 427, 478, 484, 529, 547
SfcI CTRYAG 1 cut(s) 641
SfoI GGCGCC 1 cut(s) 263
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 2 cut(s) 66, 193
SgrDI CGTCGACG 1 cut(s) 399
SinI GGWCC 2 cut(s) 85, 431
SlaI CTCGAG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 242, 528
SmoI CTYRAG 2 cut(s) 242, 528
Sse9I AATT 4 cut(s) 354, 569, 577, 594
SspDI GGCGCC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 96
TaqI TCGA 4 cut(s) 66, 193, 243, 400
TasI AATT 4 cut(s) 354, 569, 577, 594
TatI WGTACW 1 cut(s) 379
TauI GCSGC 4 cut(s) 166, 291, 453, 494
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 57, 114, 576
Tru9I TTAA 3 cut(s) 57, 114, 576
TseI GCWGC 1 cut(s) 285
VpaK11BI GGWCC 2 cut(s) 85, 431
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 2 cut(s) 354, 594
XhoI CTCGAG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.